G31244


Basic Information

Item Value
gene id G31244
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 66892429 ~ 66917769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41951
ACCTTAATAGATTTACACTGGTGTACTGCCAGTGAATGAACATCCAGTGGACGTGTTTGAAAAGTGGTCAGGAGCGATGtagaataatgtgtttttacacttgCAATGAGTGCAAGaacaatgtaggtgtttctattaccGCAATCATTAAGTGGAGGGGCAAGTAAATGTCTAAAACTTGATTACTGAatgtctaataaagtggctaatGAAGGAATGTataagataggtgtttctaataaagtggccacggTGTGAAAGTGCAAAGTAGGGGGTAAGTGTCATTTTTACCCACCCCCTGCTTTTTGATTGCCTGTCTTTTAAAAGGTGAAACCTGTTGAGGAGAGCTTATCATCTGCTAAAGGCGCACATTTCTAACTCAACAGCCCAGCTGTcacatttaatgtaaaaaattcaTAATGTAAACGTCTGTTATGTTCTTTAAATCATGCCTGCAGCTATCTAATCTAGAGAGCTGCTAAGAATGGCAAAATCCAACACTGTTAGCGTGATGCTAACTTAACAGGAAAACCCCATTACTGGGCTAGAGCAAACTAGCATTATTTTAGTTTAGCTgacatgtaaacaaaagctatTTTGAAGCCAATTAGGTTGGTGTGTAATGACATGCTTGGCTGGCTCATACTTTGGAAAATTGGACACGTATGGCGTGTTTATATTGTGCTTTGCGGCAGCCATTGTTGAGCTCTCTGTGATCGGACTCCCTCAGGGTTACACACATCATACAATGATACAAAGAAATAAGGACATAGGAAATAAGGTGTGGTGTTCTATCCTCTACATAGTTGTAAGTCGTTCAATTAGaacataaagcacatttaatCAATTGGATAAAAAGTATAGAAATATGTACTCTACATATTTCTAGTGCTAATTGTGCGTGAGAGACTGTGGCTGCATTGAGAAACGTTTTGAGAGAAGGTCACCCCAGCCTGCAGACTTTTTGGAAAGGCTCTAAAAAACAATGCAGCTCTCATTTCTTTAAAcagttttgtaattttgtaatataaaaaaaaaaagtcaagcaCTCCTGCATCAATACAGGCAATGGCATGCCTTCAGATGCATCACCCTCTAATCCTGTTCTTTTATTTATGAAGAGATAGCATTAGTCAGGCAGCGCGGTGCTGtgaatatgtgtatgtgtgcgtgtgtgtgtgagaacgtGCTACACCTCCATAGTCACGCAGTGTTAGGGGCTCAGGAGGGCTGCTGCTATGAAAGTGTAATCCTTCATTAGCAATGACACAGCACATTAGGCAAGCAGGCAAAATTACAACCGAAGACCACGCACTCCAGCTTTCAGAGCTGTGAAAAATGGACGATGTTCCTATTTGGGgggtgtatatactgtaaatgtgtttCACATCTAAATGTGGTTGGCCAGACTGAGTATGGGTGGGTTGCGAAGACAATTGCAGAGATAAAAGATAATCTGAGGGTgtgtattagggctgcacgatattggaaacattttttattgcaaatgttatttttttggcaATATATATCACGAtccccagccccgcccccacaccTGCATGCTATCTCGCGTCCGGACCAATCAAAAGCTGAGTCAGCGCATGAGCAAGAAAAACATCAAAATAACAGtgatcggccctttaatcaggtaTTTAAATGGCCTtgtaaaaggtaaataagagcgtttttctgggatttaaagcgtgaattcagctgtaactggaaatatctgtgcaaaactgtgctggacagaggtgcacagctttccacacctgcgtttacaagcatgtgcgcaaccatgtggatggaggccattcagttacctcgtgtttacttcAACCCCATTCATCCCCCCTCGCACTTCTCAGGGAGCTggagcctgtcactcacacagacacagagacagcgctgtgtatctacttcttgtgtcaagaattaaTATATTGCAACATgaagtgtttgatttaattgcctgcAGTGTGGACTATTGTGCATGCGCACATCGCCGTGACGATGCTTAAGTGTGTATTGCAGGATGATGCTGATCCATGTTATAGAAGAATGCACAAATGTGTACATACATCTTACCTTGTCATTAGTACAGTTACGTTTCTTAGTTATAGTTAGTTTGCATGACAGTTAGTTGGATGTCGCTTGCAGTGGTTGCAAAGTTAAGGGGTGTGAGGGGGGATATAGAGTGGTGGGAGGGGATACTCTATTACCACACAATACAAGACACATACAGTGCATTCAGCATTTAGACACGTACACATTGATGAGCCACAACTTTAAGCACCTACTCGTTGATGACGTTAATTATTAAGTGCATGTCAAAGTCACCAAACTATTGATGTGTTGGACCCAGGGGAGAACAGTCAGCCATTAAGACTTAAGCAACTCTGACAAGGTGTCTGGGTCTAAGCATCTCTGAGTCTAACAAATACGGTACCGTTGTTCTGTCACATTGTTCTGCTAACAAGCACTCACACTGACCAGTGATGGAGAGGAGGGACGGTCATGCAACCTATCTAGAGATATTAAGGTCACCGCAAAGTTCCACAAAGAATCGAATGATAATGATTTTGCATCATTTCAGACAATGCTAACCTCTGTGCAACTTAGAAAGCACTTACATTGGGCAAGCAAGAATTGGAACTGTGGATGGTGCTGTTTACAAGAGGAAGTGATGGCGCCATTATATCACTTCCTGACGTTTTTAGGCATAGAGGTGCTGCCCTGGCCTCTAAATACTGCAGACATTAAACCAAATGAGCGTCTTATCGATGCGCTGGAGAAGGCCTCATCACGTGCCGTACAGAACTTTAAGTTTAGTTATTGAAGAAGCTTAATACCACAGACTACCACCTTCTGAGGTCTGGCAGAGTCCATGCTTTTGCAGGTCAGAGCTGCTCTAGTGGCAGTGGTGTTATTGTTTTGGCTCATCAATGTATCATGTGTTTGACTCACGTTGTTACAAGGTAGTGCACACTATTAAAAAAGAACACACTACTGGCCAGTGCTACTACTGCTGCAGTGTCCCAACACCACATACTGTTGTGTCACTATATGATATAGTCTTTCATAACAGTGATGTGCATTAAACTTTTACACAAGTGATATAGTAATGAGAGCGTAACCTACATGGTCAAGCTCTTGAGCTTCTGTGGTGCAGCAACACTGTGAAAATAGAGGAGAACAAGGTTAAACGAAGCTCTGCTAGACTATGAGCCTTAAGAAAAGGTGATTCCTTCTCCACGGCCTCCTTGATTTTGGTTAAATTAGGTCTTTGCCATTAATGCAAAGTCTGGAATTTGAAAATACAATGTGCTGATCCATGTAATTCTTAGTGTAATTAAGAATTCTAAATATTCTCACTTCCGCTTGCACTGATGTCTAATAGGTACATATGGATAATAATGTTAACAGCTATATGTTAGCTATATTAGTGTGAAGCAGATTTGATTGGTGATTTGCTACTGCATGCTTGGAGGTTACAGTCTGTAGGGTGTCAGGAGAGTCAGGATAAGCTAGGTTCAGGGGTCAAAACATCGAGTAGGGCTTTAAATATCTTACATAACTCTCTCGGGGGATGACGGGACGCTGCCATTactgagagaaaagaaaatagacCTGCGGAGTGCATCTCCCGGCAGTTCCTCCGGGATAAGCTCCGCCTCACTCTGAGCGATTCGCAGAGCCAGCTCTCGATCTCGCCTTTCCTGCTCAAGCACCGCCTGCCGCGCTGCCTCCTCTTCTCGCTCCGCCTCCAACTGCCGCTCCATCTCCTCCTGCaatctcctctcctcctcttctctcttcttcctctcctcttcctcctgcttTCTCTTCAGCTCCATCTCTGCTTTCAGGcgtctctcctcctcctcctgtttGCGGCGCTTCTCgtcctcttctctcctcttcctctctttctccatctcctcCTGGATGCGGCACAGTCTCTCTCgctcctcctcctgctgtttCTGCTTCTGCATGGTGGTCAGCAGCTGCTCCGAGCGGGTCACCAGCGCCTGGTGCTCGTGATCGATTTCGATACGGGTCATGATGGTGCTcTTGATCTTGAACATGAGCGCATCGATGGAGGCGTCCAGATCCTGGATCTGTTTGCTCATTTCTTGTTTGGCTTCCTTGAGGCCGGACACAACCTCGTTAAACTTCCCCATCCGCTTTTTCAGACTGCGCACCTTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41951 True 4218 lncRNA 0.34 5 66892429 66917769

Neighbor

gene id symbol gene type direction distance location
LOC103023947 impg1,LOC107660503 coding upstream 32534 66801591 ~ 66859895 (+)
htr1b LOC108427470 coding upstream 208107 66681122 ~ 66684322 (+)
LOC103022286 snx14,LOC108427503,LOC108279824 coding upstream 504215 66349351 ~ 66388214 (+)
cnr1 cnr1,LOC104936193 coding upstream 550472 66336429 ~ 66341957 (+)
LOC103021656 rngtt,LOC107554925,LOC107731501,LOC107660510 coding upstream 618712 66096715 ~ 66273717 (+)
LOC111191093 LOC103025937 coding downstream 178129 67095898 ~ 67096914 (+)
LOC111194387 NA coding downstream 180194 67097963 ~ 67100303 (+)
LOC103025937 LOC103025937 coding downstream 195427 67113196 ~ 67116181 (+)
LOC111194388 NA coding downstream 275459 67193228 ~ 67194052 (+)
LOC111194389 NA coding downstream 277747 67195516 ~ 67196427 (+)
G31192 NA non-coding upstream 309863 66581802 ~ 66582566 (+)
G31181 NA non-coding upstream 438238 66453502 ~ 66454191 (+)
G31161 NA non-coding upstream 446025 66446161 ~ 66446404 (+)
G31149 NA non-coding upstream 498324 66343334 ~ 66394105 (+)
G31123 NA non-coding upstream 616830 66275166 ~ 66275599 (+)
G31278 NA non-coding downstream 182603 67100372 ~ 67103483 (+)
G31370 NA non-coding downstream 433026 67350795 ~ 67354687 (+)
G31410 NA non-coding downstream 564824 67482593 ~ 67517034 (+)
G31406 NA non-coding downstream 571868 67489637 ~ 67579907 (+)
G31479 NA non-coding downstream 736380 67654149 ~ 67654605 (+)
G31000 NA other upstream 1055064 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 1793067 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 1793856 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 1805649 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 1845451 65022419 ~ 65046978 (+)
G31355 NA other downstream 296536 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 565566 67483335 ~ 67506898 (+)
G31407 NA other downstream 579434 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 773672 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 1102271 68020040 ~ 68022940 (+)

Expression


Co-expression Network