G31370


Basic Information

Item Value
gene id G31370
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67350795 ~ 67354687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42112
TGCGCATTACAAAAATGGATATTTCTTTCACTGTTTTAGTGTTAAATATATGGATACCAAATTCCATTAGCAGACATACAGTGGACCATCTAACTTCAaccaatacaaaaaaactaaagcaaaatatggaaaaataaaatcaagtaAGTCACCTTGGCAAATAGAGTGTGTCCAACTACTGCTTTAGTACTAACTCTCTCCAACAGTACATTACAATGACAGTACAATGAATATGCTTGCTTTCCTTTAGAGCAACTTGGTCAGTCGTGGGACGCACTGAGACAGGCATTATTAGACAACAATGTGACGATTGATAGTGAGATGTAAGAGAATGGAGTTGTGTGAATggagaagctgtgtgtgtgttggaggtgTTATGTCTGAAAGGTTTGTATTTGGCATGTGAGAGTTAGTGATGAAGGCGAGAGAGCAGTTTCATTATCAGAGCACTGTACTATGCACAGTTTACACCAACTTCACAGACATCAAACAGAGATAAAAACAGGTTAGGTGCACAAAAAGAATGCCAGGACGACTGAGGGTGAACTCAGTCATTTTGAATAATAACGCAAAGCACAGCATAGGCACTTGAGCTtcccctaggagtgataagtgTTTGATACCACATTTACAGCCTCTCCTAGCCCTCCAATCTCAAATTAGGCAGATAATTAGCCAGTAATCTAGCTCACAAAGGTCCCCACAACacaatttttttctctctctcgttctctctgtgtctctctcggCCTCAAACACATGAATGCTTGTAAACAGTTTTCAGCATCACTTGTATAATACAAATACAGCCCTACATAAATGTTCcagcaatataaaataaatgttaactgGGAACAGCTATGAACTCTCCTGCAGTTCTACGTGACAAATGGCTAAACACAACAGATCAGACATGCACGGTCTCAGAGGAATAAGAAGAGATAAATTCTTCTGAAAACTCGTTTTGGTCGTAAGACTTGTAAGACTTTTCGATTTCGGTCACATCGGCAAGATCGACAACACTGAACAGACTAAATATGGACATGaagctttctttaaaaaaggatAATCTTATCAACTAACTTTTATTTAGATAGTCAGTCTTGATCAAATTCATTACACACTAAAAACAAGGACATgctaaaagtcatggaacagtaGTATGCAACTTTATTGTGAAGGGACAGCCTGGGAATGCTCACATCTGAAAAAGATGTGAGGTATTACACCACAGTTAGtttcgaccctgcaatgtgattggcagAGAGGCATTCTATAAAACTgtcgttatcagccggtaatgcactgtaaccgaagctctccatgtgttactccgccacatacaggtaacctagcaacgatgcagcgcttacaagccaaacagtgcagctaaaaacagagcagcaatagaactatttttacttggagtgtttataaccaaacagatagtattttctcctcctttttaactcaaaatctttcaaaattgcaacACTACACTCGATGTTCATGCTATAACAAGTAATATTGGCACAGTAGTGAAAATAtcacacgttatagcacgaaccttgagtgtatttttGCTTAATTATCTTGCGAGTGAGACTAAACACtgaccagtgtgctcatggcatgTGTCCTAGGAATAcatcacagaaggcattaccacatACAGTGGTCAATGCAGTgaatggtaatgattgtgacctgcAGTGgctggctagaattgtcagaGCGAAGAGACAAGTGActgacagaaatcacatccacatttaatgcaggagtaCTCTGCATAAAACAGTTCTCTAATAAAACAGATCAAAGCACTGATACCTGTGCGTTTACTCTAAGAATGGCCTGTCTTTACAGTTTTAGTCTGTTGCACTGCTATTACCCAGCAGAGCAGTGCAACAGACTAAAACAGTAAAGACAGGCCATTCTGAGAATAAACGCACAGGTATCAGTGCTCTCTCATGATCAGTCAGTCAGAGGGCTGTGAAATATATAAAGACACACAAGGGAGCCAGCAGCAATCATACTTTTAGAATGATAAAGGAATACAATTACTATAATCTGAGtgatacatttattacactacCATTCTGATGCGTTGCGGAACATTTGTTTTCTTAAGAAAAATATAAGACTAAAAACATTATCCCTATAAtcattgaataaaaataatctacAGCAGAATCATTAAAATGTGCCCTTGCTGCTGCCGCCCCCTACGGCCACATGTACTACAATCGGTCATCATGCAGGAGTGCCAAGAATTTTTATGCTTTCTAACTTAATGTTAACTTTACTTTGCTAGACAGACTGAGCCAAATATACAGCCACATTTTGCATTTTCCccgaattaaaaatattaaatatattcgCTATGTTTTGTAACACATTGTTACATGTCTTCTTGTCCTAGTGTCCAATGGTAGAATTTTTTTCCTGATCATTTTCGCCCACTCCTCTAACACTATAACACTCGGGGATGACGACTGTAGGGGTTTCTTTGTGAGACTTGTACAGCAGACCTAGACAGACTTTGATTCTCTCACTTCTCTCAATGTGAGCAGCAGATAGTACTGCACATATTACTGTACGTTAACTCAGAAGGTGCACCCAGTTCAGGGAACCAGTGGAATAGTGGAAAGGAACTGTATCAGAGACTGATGTATTCTTCACATGACACTGCTGATGCTGATATCACTGAGTACTAAGGCCGCCAGAGGCTTAACCACGTACTAAAAGAAGTAATTATACATGTGACTACTTTGTCCAGGGTGAGGCCATACGTGCCAATGATTAATAATGATCAAATTCAATCTACTGAGAAGATTCTTTctgtaatgacaaaaaaaacaggaggataaGTACAATATTGGCATAGATATACTGTTAAGATTCTAATTAACAATCAATATTTAAATCAGTAGTAAATCGGGATCAGAACTCTAACTCTAAAACTAAGACAATCAACAGTAGTGTAACTAGGCAACCGCATCCATACTGCTGAAGCAAGAGGTGAACAATGATGACAAACAGCCTCCACCAATGAGCAAGCAGTGGGGCACACGAATAACTTTTGCTTCAGTTCACATAGCTCCTCCCACAACAGCCACCCATCAGTAccataactaaatataaaaagaaataagttAAGTTCATATTTTCCAGCCTCGCTCGGTTCATACTGTTTTGCGATTCATAGATCAGCTTTGTTTGCTTATATACAATAAAGTGAGAGACAGTACAAGGCACACATTTAAACCTTTTTGAAACGTttcaaatacataaattaacAAATCATCACATGACTAGCTCTACTACGCTCCGACTCCTGTGCTATAGGCTAAAGGCTACAGGCTTAAGCCAGCTCCGTCACATGTGGTGTGCGCGGGATAAAAAGGTTTTATACATGTGCTTGACTATGTGCTGACTGACCCAACTGGGGGCTGGTTTTGTGAGTCTCTGTGTGAGATGCAAGTCTGTGTTCAGCTCCAGGAGACCACTGAAGCCTCCTGGCGTCCGGGATGTTGGAACACCAACACTGAATTGTGCTTGATGCAGATGCAGAGTCCTCCATCTCTTCAGTCCATCGCTTCGTATGTCTGGTGCTTTCCAGGTTACAGCGCAGGTGGCAGTTGCTAACATGATAACAGTTTGTTGGTGTTATTTTGCTTCATGACAAAACATGTTCACACAAGTCAGATGCTGTCAACAAAGCTGCCGGGAAAGAGGCCCGTCCGACCGTTCCTCTGGAGAGTTCCTTTGAACCAGCCGTCCTCACGCTTCTTGTGCACAAACACTATGTCTCCCTctttcagctccagctcagcctCGCTCTGTGGAGGGTATGACACTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42112 True 3866 lncRNA 0.40 2 67350795 67354687

Neighbor

gene id symbol gene type direction distance location
LOC111194389 NA coding upstream 154368 67195516 ~ 67196427 (+)
LOC111194388 NA coding upstream 156743 67193228 ~ 67194052 (+)
LOC103025937 LOC103025937 coding upstream 234614 67113196 ~ 67116181 (+)
LOC111194387 NA coding upstream 250492 67097963 ~ 67100303 (+)
LOC111191093 LOC103025937 coding upstream 253881 67095898 ~ 67096914 (+)
LOC103028999 NA coding downstream 161245 67515932 ~ 67528356 (+)
swt1 NA coding downstream 179128 67533815 ~ 67579081 (+)
LOC103045824 LOC108256302,LOC108439581 coding downstream 523853 67878540 ~ 67929915 (+)
LOC103035042 LOC108439590 coding downstream 649547 68004234 ~ 68018991 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding downstream 669250 68023937 ~ 68042368 (+)
G31278 NA non-coding upstream 247312 67100372 ~ 67103483 (+)
G31234 NA non-coding upstream 391213 66821189 ~ 66959582 (+)
G31244 NA non-coding upstream 433026 66892429 ~ 66917769 (+)
G31192 NA non-coding upstream 768229 66581802 ~ 66582566 (+)
G31181 NA non-coding upstream 896604 66453502 ~ 66454191 (+)
G31410 NA non-coding downstream 127906 67482593 ~ 67517034 (+)
G31406 NA non-coding downstream 134950 67489637 ~ 67579907 (+)
G31479 NA non-coding downstream 299462 67654149 ~ 67654605 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding downstream 505946 67860633 ~ 67862273 (+)
G31583 NA non-coding downstream 632746 67987433 ~ 67987677 (+)
G31355 NA other upstream 135609 67214305 ~ 67215186 (+)
G31000 NA other upstream 1513430 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 2251433 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 2252222 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 2264015 65077780 ~ 65086780 (+)
LOC103027733 NA other downstream 128648 67483335 ~ 67506898 (+)
G31407 NA other downstream 142516 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 336754 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 665353 68020040 ~ 68022940 (+)
G31702 fam84a other downstream 1471956 68826643 ~ 68827572 (+)

Expression


Co-expression Network