LOC103027733


Basic Information

Item Value
gene id LOC103027733
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67483335 ~ 67506898 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42195
AGGTTGTGATCTGGTAAATAGTGGAAAGATTGAGGAAGTGACGGGTTTCTCTGGAGAATCTGTATTGCTGCCCTGCTCCTGCACCAACCTTCACTCTAAACCCAGCACTGTTACATGGAAGTTTACGTCAAGGGAATCTAAAACTTCTGCTGATGAAGAAATCTACCCTAATCAGAATAAACAGCACAGAAACAGAGTTAGACTGACCAATCAGAACTCAGGAAACCTTACTTTACTCATATCAGACCTGACTGCAAAGGATCATGGAGTCTACAGGTGTTCAGTACAGCATGATCATAAATATATCAGACTTTATATTAAAGtacGAGAAACTACAGTCGCTCCACCAAGGCCACACTACACAACCACACCAGTTCAAACAACAGTGCGAGAAACTACAGTCTCTCCACCATGGCCACACCACACAACCACACCAGTTCAAACAACAGACCCAAAAACAGGAGGTCAGGATCCTTCTAAACAAGTCCAACATttagTTATTGGTGTCCTGATGGTTGTGTTGCTTCTGTTATTTGGAGTAGTGGTGTTCATCTGTTGGAGATGCAGAGgaAGCAGAGACGTCAGACAGAGTGTGAGCACTGGTGGACATCTGGGCCTTGACAAAAAGCAGGAGATTCAAGTTCATTCTGTTGAAGTGACATACTCTACTATAGCCCACCTTAACATAACCACACCAGCACATGTTCAAATTAACACCGAGGAGAAAACTGAATATGCCTGCATCATAAAGTAAAtcctttatttaaagtttttatttgaaGAAACATTTTTGGTTGCCATGTGAGTCCTGCacatttgtttatgtttatgtttacatttaataacatgtttcttgtgtttctttttgtttagactaatatttttctatttaaatatgCACTTAAATTTTATTCAGGCAATCTAATAGAACATCAcagtaaaattacctaatttctctatatttttcattctatccaaaaaaaaaaaaactttatgcaTAACTTTAAGATTCAATGATCCAGACATTTTGTTGCTGACTGAATCAAAGTTAAAACAGTTTATTAGGAATTAGCCCTTACAGCATAAGTGCCTTCCTGTGCTGTCACTGAAAACTACTATAACTTATCTCTCTAAATGCTCAAAAATCACCATAGACCCTATTTAATAAGATTTCAACAGATTTCTAATCTTTCCACAAAGATTCTGGTATTTTTCTTAGGACAATGGGAACCATCattataaactgtgattatagcTGTGAACAATTCTGTGGTtgagaaaatctgcttttagctacagtgcaccagTAAAAAACTAATGCTCTAACCCCATTCTTTTTATTCATGTGTCATACtctatcaaaaa
>TU42196
AGGTTGTGATCTGGTAAATAGTGGAAAGATTGAGGAAGTGACGGGTTTCTCTGGAGAATCTGTATTGCTGCCCTGCTCCTGCACCAACCTTCACTCTAAACCCAGCACTGTTACATGGAAGTTTACGTCAAGGGAATCTAAAACTTCTGCTGATGAAGAAATCTACCCTAATCAGAATAAACAGCACAGAAACAGAGTTAGACTGACCAATCAGAACTCAGGAAACCTTACTTTACTCATATCAGACCTGACTGCAAAGGATCATGGAGTCTACAGGTGTTCAGTACAGCATGATCATAAATATATCAGACTTTATATTAAAGCGAGAGAAACTCCAAAACACCGTCCATCAGAAGAGCCTCCAGCTACAGGTGATACTGAAAAGGAGAGAAtgtggtgtattgaGCTTTAGGGACAAGGAAATCTGAAGAAGCAACACAATCTTTCTCTGATTCACATCTGAAGAAAGTTTCCactggtctgtgtgtttgttgtgtaacAGAATCagattcttttcttttccaaaTTGTAGCTTTTCCATCACATTGGTAAAGGTTAACGTCTCATCAGTCCATTATCAGTTCATGGGCTTGTCTCTGTACTTCATAGCAGATTCCAGCCTGGTCTTCCTATTCTTCTGGGTAATTAGTGGTTTTCATCTTCATGTGGATTTTATGGATTTCTGTTCATTAAGTCCTTTGTGAACAGTAGACTGTATTACCTTCATCCCTGCCCTCTGGAGGATGTTGCTAATGTtattaacagttgttttagggtttttctttacagcactccTGTTTTCAACTGCTGTTTTCCTTGAACTACCTGTTCAACagctgttacttagtacaccagtggcGAGGGCTGTTTTAAGGCTTTTTTAggccccaagcaaaatgga
>XM_022678471.1
ATGCCTGGTCGTGTGCTGAAggactgtgcctgggaactcgcagaggtttatacgGACATCTAcaacacctctctgaTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGTGATAATGGAGTGTGTGTATCTTTTGCTGGTTGTGTTTCACTTCACTGCAGGTTGTGATCTGGTAAATAGTGGAAAGATTGAGGAAGTGACGGGTTTCTCTGGAGAATCTGTATTGCTGCCCTGCTCCTGCACCAACCTTCACTCTAAACCCAGCACTGTTACATGGAAGTTTACGTCAAGGGAATCTAAAACTTCTGCTGATGAAGAAATCTACCCTAATCAGAATAAACAGCACAGAAACAGAGTTAGACTGACCAATCAGAACTCAGGAAACCTTACTTTACTCATATCAGACCTGACTGCAAAGGATCATGGAGTCTACAGGTGTTCAGTACAGCATGATCATAAATATATCAGACTTTATATTAAAGtacGAGAAACTACAGTCGCTCCACCAAGGCCACACTACACAACCACACCAGTTCAAACAACAGTGCGAGAAACTACAGTCTCTCCACCATGGCCACACCACACAACCACACCAGTTCAAACAACAGCAGACCCAAAAACAGGAGGTCAGGATCCTTCTAAACAAGTCCAACATttagTTATTGGTGTCCTGATGGTTGTGTTGCTTCTGTTATTTGGAGTAGTGGTGTTCATCTGTTGGAGATGCAGAGgaAGCAGAGACGTCAGACAGAGTGTGAGCACTGGTGGACATCTGGGCCTTGACAAAAAGCAGGAGATTCAAGTTCATTCTGTTGAAGTGACATACTCTACTATAGCCCACCTTAACATAACCACACCAGCACATGTTCAAATTAACACCGAGGAGAAAACTGAATATGCCTGCATCATAAAGTAAAtcctttatttaaagtttttatttgaaGAAACATTTTTGGTTGCCATGTGAGTCCTGCacatttgtttatgtttatgtttacatttaataacatgtttcttgtgtttctttttgtttagactaatatttttctatttaaatatgCACTTAAATTTTATTCAGGCAATCTAATAGAACATCAcagtaaaattacctaatttctctatatttttcattctatccaaaaaaaaaaaaactttatgcaTAACTTTAAGATTCAATGATCCAGACATTTTGTTGCTGACTGAATCAAAGTTAAAACAGTTTATTAGGAATTAGCCCTTACAGCATAAGTGCCTTCCTGTGCTGTCACTGAAAACTACTATAACTTATCTCTCTAAATGCTCAAAAATCACCATAGACCCTATTTAATAAGATTTCAACAGATTTCTAATCTTTCCACAAAGATTCTGGTATTTTTCTTAGGACAATGGGAACCATCattataaactgtgattatagcTGTGAACAATTCTGTGGTtgagaaaatctgcttttagctacagtgcaccagTAAAAAACTAATGCTCTAACCCCATTCTTTTTATTCATGTGTCATACtctatcaaaaaaataaataaataaaagaagaaccTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42195 False 1365 lncRNA 0.37 7 67492744 67506872
TU42196 False 901 lncRNA 0.41 3 67492744 67493985
XM_022678471.1 True 1978 mRNA 0.38 18 67483335 67506898

Neighbor

gene id symbol gene type direction distance location
LOC111194389 NA coding upstream 286908 67195516 ~ 67196427 (+)
LOC111194388 NA coding upstream 289283 67193228 ~ 67194052 (+)
LOC103025937 LOC103025937 coding upstream 367154 67113196 ~ 67116181 (+)
LOC111194387 NA coding upstream 383032 67097963 ~ 67100303 (+)
LOC111191093 LOC103025937 coding upstream 386421 67095898 ~ 67096914 (+)
LOC103028999 NA coding downstream 9034 67515932 ~ 67528356 (+)
swt1 NA coding downstream 26917 67533815 ~ 67579081 (+)
LOC103045824 LOC108256302,LOC108439581 coding downstream 371642 67878540 ~ 67929915 (+)
LOC103035042 LOC108439590 coding downstream 497336 68004234 ~ 68018991 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding downstream 517039 68023937 ~ 68042368 (+)
G31370 NA non-coding upstream 128648 67350795 ~ 67354687 (+)
G31278 NA non-coding upstream 379852 67100372 ~ 67103483 (+)
G31234 NA non-coding upstream 523753 66821189 ~ 66959582 (+)
G31244 NA non-coding upstream 565566 66892429 ~ 66917769 (+)
G31192 NA non-coding upstream 900769 66581802 ~ 66582566 (+)
G31479 NA non-coding downstream 147251 67654149 ~ 67654605 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding downstream 353735 67860633 ~ 67862273 (+)
G31583 NA non-coding downstream 480535 67987433 ~ 67987677 (+)
G31595 NA non-coding downstream 568299 68075197 ~ 68075581 (+)
G31596 NA non-coding downstream 589917 68096815 ~ 68097060 (+)
G31355 NA other upstream 268149 67214305 ~ 67215186 (+)
G31000 NA other upstream 1645970 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 2383973 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 2384762 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 2396555 65077780 ~ 65086780 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 184543 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 513142 68020040 ~ 68022940 (+)
G31702 fam84a other downstream 1319745 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1500543 69007441 ~ 69161883 (+)
G31939 NA other downstream 2690027 70196925 ~ 70199742 (+)

Expression


Co-expression Network