G31480


Basic Information

Item Value
gene id G31480
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67654150 ~ 67654617 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42279
gcttttttttttttttttattttatttctaattttttcccattttctccccaatttacacggccaattacccaacccattcattaggactccccctatcactagtgatacctcaacacaccaggagggtgaagactagcacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagcattaccgagcagccagcgcgcttggaggaaagcgcagcggctcggctccagtacatcagctcacagacgccctgtgctgcagacatccccgtgggagtgatgtggggagagagcgccatctacccacccagagggagcagggccaattttgctccctctgacgccggcagcttgatggcaaagctgcatgagctggggttcgaaccggcgacctcctgctcatagtggcagcgctttagaccgctggaccactcggcgccccaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42279 True 468 lncRNA 0.45 1 67654150 67654617

Neighbor

gene id symbol gene type direction distance location
LOC103030302 ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107726450,LOC107553504 coding downstream 47974 67585111 ~ 67606176 (-)
nek1 NA coding downstream 174363 67434969 ~ 67479787 (-)
sh3rf1 sh3rf1,LOC107683940,LOC107739375,LOC107597452,LOC107755262 coding downstream 238258 67352889 ~ 67415892 (-)
LOC103032908 LOC108427497,LOC100690439 coding downstream 338399 67214548 ~ 67315751 (-)
LOC103026745 LOC108427498 coding downstream 486074 67156457 ~ 67168076 (-)
trnai-aau NA coding upstream 2848 67657465 ~ 67657537 (-)
trnai-aau_1 NA coding upstream 3009 67657626 ~ 67657698 (-)
trnai-aau_2 NA coding upstream 3564 67658181 ~ 67658253 (-)
trnat-agu_1 NA coding upstream 3962 67658579 ~ 67658651 (-)
LOC103045211 NA coding upstream 197940 67852557 ~ 67853773 (-)
G31385 NA non-coding downstream 337977 67315844 ~ 67316173 (-)
G31352 NA non-coding downstream 449901 67203958 ~ 67204249 (-)
G31329 NA non-coding downstream 531210 67122629 ~ 67122940 (-)
G31303 NA non-coding downstream 556608 67089429 ~ 67097542 (-)
G31316 NA non-coding downstream 595716 67058059 ~ 67058434 (-)
G31482 NA non-coding upstream 2958 67657575 ~ 67659085 (-)
LOC111191948 NA non-coding upstream 30749 67685366 ~ 67686312 (-)
G31546 hmcn1,LOC106560561 non-coding upstream 178806 67833423 ~ 67835048 (-)
G31523 hmcn1,LOC107599116 non-coding upstream 188667 67843284 ~ 67889027 (-)
G31564 LOC108439581,LOC108256302,LOC106571171 non-coding upstream 260842 67915459 ~ 67920354 (-)
G31437 NA other downstream 125813 67503749 ~ 67528337 (-)
G31424 NA other downstream 221726 67423872 ~ 67432424 (-)
LOC103031958 myo6 other downstream 609832 66862465 ~ 67044318 (-)
trnad-guc_8 NA other downstream 2556477 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 2561001 65093078 ~ 65093149 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 200989 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 277943 67932560 ~ 67940713 (-)
G31622 NA other upstream 436603 68091220 ~ 68091581 (-)
fam84a fam84a other upstream 1171372 68825989 ~ 68829020 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1490691 69145308 ~ 69161904 (-)

Expression


Co-expression Network