G31564 (LOC108439581,LOC108256302,LOC106571171)


Basic Information

Item Value
gene id G31564
gene name LOC108439581,LOC108256302,LOC106571171
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67915459 ~ 67920354 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42386
GTGACATCTATGTTATACAACGACTGCTAATGGTGTATACTCAGTGTAGCTTAAGTGTAGACAATGGTATGATTctgtttatttgatatttaaactCTTTTTCTGTGGAATATAGGGTGTAGTTTAGTTGGTGCTCACAGCCTGCATCTCACTAATCTCCTTCTGATACTTGATGATGGTGCTGTTGAGCTTCTCCCTCTCGGTGCGCAGCTCCAGCTGCAACTTCCTGTTTTCCTTCTCCCTCCTGCGCAGCTCTATGTCGTCGCCACGGCGACCGCTGGGCACCACATCCTTCCTGTTCATGATCTCAGCCAGCTTATTTATCGCCTGGATCTTGAGCGTTCTCTCAGACTGAAGCTGCTTTTCAAAGGAAACTTTCACGATGCTcatctctttctcctcttctttaGCCCTCTGCAACTGCTGCAGAAGTTCTTTAAGCTGGTTATTGAGCTCTTCTTTCTCACTGGCCAAGTTGCCCACATCGACTGTCAGCGTGCGGTTGGACTCCTCTAGCGAGTTGATAGTATTGTCCTTGTCGCTGAGCTCCTGCCGGTGCCTGGCAATCATGTCTTTGATCTCCAACTCCTTCATGATTTTCTCCTTCTCCAGGTCTGAGTACTGCTCCTCAGCGATGGAGCGTGCCAGCTGCTCTGAATCTGCCTTCGTCAGGCTCACCTCCAACTGAGCAGCCAGGGAATCcCTCTCTTCCTGTAGATCCTCAAGTCTCTGCTGGGCATCCtggtacagttttgttttctcatcacACTCCTCTTTCAGCTCACGAAGCTGGGTCTTATACAGTTTAGTGAAATACTGCTCAGCTTCCAGTTGGTCCTTCAACTCCTTCAGGTGCAAGTCAGCCTCTTCTCTCTCCCTGCGCAATTCTTGGTTATTTTTCTCCAGACTGAGTTTGAGCTCCAGTAGATGGTTCAGTTCTTGTTTGAGTTGTTTTTCTGTGGAGCGAAGTGTGGTGACCTCTTGCCTCTGAGCCTT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: rho-associated protein kinase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42386 True 996 lncRNA 0.31 7 67915459 67920354

Neighbor

gene id symbol gene type direction distance location
LOC103045211 NA coding downstream 61686 67852557 ~ 67853773 (-)
trnat-agu_1 NA coding downstream 256808 67658579 ~ 67658651 (-)
trnai-aau_2 NA coding downstream 257206 67658181 ~ 67658253 (-)
trnai-aau_1 NA coding downstream 257761 67657626 ~ 67657698 (-)
trnai-aau NA coding downstream 257922 67657465 ~ 67657537 (-)
LOC103046427 LOC108439583 coding upstream 47782 67968136 ~ 67972358 (-)
LOC103046744 NA coding upstream 52871 67973225 ~ 67981928 (-)
mycn LOC108439586 coding upstream 303470 68223824 ~ 68229829 (-)
ddx1 ddx1,LOC107726609 coding upstream 419471 68339825 ~ 68351833 (-)
scml4 scml4,LOC107726459,LOC107679489,LOC107726622,LOC107601197 coding upstream 1175900 69096254 ~ 69140809 (-)
G31523 hmcn1,LOC107599116 non-coding downstream 26432 67843284 ~ 67889027 (-)
G31546 hmcn1,LOC106560561 non-coding downstream 80411 67833423 ~ 67835048 (-)
LOC111191948 NA non-coding downstream 229147 67685366 ~ 67686312 (-)
G31482 NA non-coding downstream 256374 67657575 ~ 67659085 (-)
G31480 NA non-coding downstream 260842 67654150 ~ 67654617 (-)
G31572 NA non-coding upstream 22143 67942497 ~ 67942707 (-)
G31573 NA non-coding upstream 22555 67942909 ~ 67943153 (-)
G31598 erh,ERH,LOC107580641,LOC105904210,LOC106607637,LOC100699790 non-coding upstream 99733 68020087 ~ 68022887 (-)
G31616 NA non-coding upstream 109124 68029478 ~ 68030990 (-)
G31630 NA non-coding upstream 376510 68296864 ~ 68297068 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 30026 67855606 ~ 67885433 (-)
G31437 NA other downstream 387122 67503749 ~ 67528337 (-)
G31424 NA other downstream 483035 67423872 ~ 67432424 (-)
LOC103031958 myo6 other downstream 871141 66862465 ~ 67044318 (-)
trnad-guc_8 NA other downstream 2817786 65097602 ~ 65097673 (-)
LOC103046133 LOC108439589 other upstream 12206 67932560 ~ 67940713 (-)
G31622 NA other upstream 170866 68091220 ~ 68091581 (-)
fam84a fam84a other upstream 905635 68825989 ~ 68829020 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1224954 69145308 ~ 69161904 (-)
LOC103033556 LOC108410406 other upstream 2997627 70917981 ~ 71043182 (-)

Expression


Co-expression Network