LOC103035359 (erh,ERH,LOC107580641,LOC105904210,LOC106607637)


Basic Information

Item Value
gene id LOC103035359
gene name erh,ERH,LOC107580641,LOC105904210,LOC106607637
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68020040 ~ 68022940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42422
gaaaaagacttttattttggagcAGTCATTCATGCTTTAGCTGGTGTTGGAGCAGCGCTCTCGCCGTGTTTCCCCGCAGCTCTGCTATACTATTAGAGGTGGAGATGtctcACACAATTCTGCTGGTTCAGCCTACAAAAAGGCCAGAGGGAAGAACTTATGCTGATTATGAGTCTGTGAATGAGTGCATGGAGGgGGTGTGTAAAATGTACGAGGAGCATCTAAAAAGAATGAATCCCAACAGCCCCTCCATCACCTATGATATCAGCCAACTGTTTGATTTTGTGGATGACCTCGCTGACCTCAGCTGTCTGGTGTACCGGgcagacacacagacataccAGCCCTACAATAAAGACTGGATCAAGGAGAAGATCTATGTCTTGCTGAGACGCCAGGCTCAACAAGCAGGGAAATAGAAGATGAAGGGACATTTCACATTGGCTGCAGCAAATCGTCTGTCATTTGTTACCTTAATGAGAATTACACTGCATTATTGGGCAATGTAAACAAAACCCAGGTGGGTTTCCTAAAAGTACTGTAGGGTTAAGACCTTTTTATCTGTTACTAGGAAACTGATGCAGTTAAAACTTGCAGGTCTTTGCCACAGTGTTTTTGGGAAACTCAGTGTTCTTATGTTGATATTACGTTGATAACATTTGTGTACTCTTAATGCCAAGAAAGATTTACCATCAGAATACCTTTATCTGGCTCTAGAGTGCTTGGGGTGGGTGGGGGCATGGGCAGTTGGACCCATTGCAGTGGGGTTTATTAACTGGACAGGAGGGTTCAAtttgaaggattttttttaaagatatatattttgtatcatCCTCcctcaaacttttttaaatataatttcaaaAGTTGTTTTCTGTGATTCTCCAGTAGTTTACACTGAATCTGCATTCTGTATAACGATTCTAAAGCTGTCAGTGCTTGCCGCTTAATAAACttgtttggagtgtttttagTTTGGTTCTTTTCTCCTTTGTCCCTAAAGCAGTAGACGTGGTACACAAATTTTATATGGTTACAATAGGACCCACCAATCTGAGCCACTAAAACAACTGACtgatgtgtttttcattgtgtGGGAGATTTTTCCTTGGTTGCCTTTGCATCCCTTTTTAGAACCGGTTTGTGTGTGCTTCCCTTTTTCCACAGTTTATATAAAGGTGAATTTACATTGTTACAGAGATGTTTGTGTTAAACGAAAGCATATTGTGTGAAAGATGTACGTTTAGACTtaataattttctgtttttgttaactgcttggaatgttttttttttcctttttttaaatccaatttGGCTGTTAATGACTGTAACTTTTTAAGTGGCTCACCattgtttattttgtcatttactataataaacagttaaaataac
>XM_007233635.3
aaaagacttttattttggagcAGTCATTCATGCTTTAGCTGGTGTTGGAGCAGCGCTCTCGCCGTGTTTCCCCGCAGCTCTGCTATACTATTAGAGGTGGAGATGtctcACACAATTCTGCTGGTTCAGCCTACAAAAAGGCCAGAGGGAAGAACTTATGCTGATTATGAGTCTGTGAATGAGTGCATGGAGGgGGTGTGTAAAATGTACGAGGAGCATCTAAAAAGAATGAATCCCAACAGCCCCTCCATCACCTATGATATCAGCCAACTGTTTGATTTTGTGGATGACCTCGCTGACCTCAGCTGTCTGGTGTACCGGgcagacacacagacataccAGCCCTACAATAAAGACTGGATCAAGGAGAAGATCTATGTCTTGCTGAGACGCCAGGCTCAACAAGCAGGGAAATAGAAGATGAAGGGACATTTCACATTGGCTGCAGCAAATCGTCTGTCATTTGTTACCTTAATGAGAATTACACTGCATTATTGGGCAATGTAAACAAAACCCAGGTGGGTTTCCTAAAAGTACTGTAGGGTTAAGACCTTTTTATCTGTTACTAGGAAACTGATGCAGTTAAAACTTGCAGGTCTTTGCCACAGTGTTTTTGGGAAACTCAGTGTTCTTATGTTGATATTACGTTGATAACATTTGTGTACTCTTAATGCCAAGAAAGATTTACCATCAGAATACCTTTATCTGGCTCTAGAGTGCTTGGGGTGGGTGGGGGCATGGGCAGTTGGACCCATTGCAGTGGGGTTTATTAACTGGACAGGAGGGTTCAAtttgaaggattttttttaaagatatatattttgtatcatCCTCcctcaaacttttttaaatataatttcaaaAGTTGTTTTCTGTGATTCTCCAGTAGTTTACACTGAATCTGCATTCTGTATAACGATTCTAAAGCTGTCAGTGCTTGCCGCTTAATAAACttgtttggagtgtttttagTTTGGTTCTTTTCTCCTTTGTCCCTAAAGCAGTAGACGTGGTACACAAATTTTATATGGTTACAATAGGACCCACCAATCTGAGCCACTAAAACAACTGACtgatgtgtttttcattgtgtGGGAGATTTTTCCTTGGTTGCCTTTGCATCCCTTTTTAGAACCGGTTTGTGTGTGCTTCCCTTTTTCCACAGTTTATATAAAGGTGAATTTACATTGTTACAGAGATGTTTGTGTTAAACGAAAGCATATTGTGTGAAAGATGTACGTTTAGACTtaataattttctgtttttgttaactgcttggaatgttttttttttcctttttttaaatccaatttGGCTGTTAATGACTGTAACTTTTTAAGTGGCTCACCattgtttattttgtcatttactataataaacagttaaaataacaaattt

Function

symbol description
erh Predicted to be located in nucleus. Orthologous to human ERH (ERH mRNA splicing and mitosis factor).

NR:

description
enhancer of rudimentary homolog

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0007049 cell cycle biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0030496 midbody cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42422 False 1394 TUCP 0.42 4 68020040 68022934
XM_007233635.3 True 1398 mRNA 0.39 4 68020042 68022940

Neighbor

gene id symbol gene type direction distance location
LOC103035042 LOC108439590 coding upstream 1049 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 90125 67878540 ~ 67929915 (+)
swt1 NA coding upstream 440959 67533815 ~ 67579081 (+)
LOC103028999 NA coding upstream 491684 67515932 ~ 67528356 (+)
LOC111194389 NA coding upstream 823613 67195516 ~ 67196427 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding downstream 997 68023937 ~ 68042368 (+)
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding downstream 329487 68352427 ~ 68724643 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 1180894 69203834 ~ 69215863 (+)
afg1l NA coding downstream 1220778 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 1263075 69286015 ~ 69321707 (+)
G31583 NA non-coding upstream 32363 67987433 ~ 67987677 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding upstream 157767 67860633 ~ 67862273 (+)
G31479 NA non-coding upstream 365435 67654149 ~ 67654605 (+)
G31406 NA non-coding upstream 440133 67489637 ~ 67579907 (+)
G31410 NA non-coding upstream 503006 67482593 ~ 67517034 (+)
G31595 NA non-coding downstream 52257 68075197 ~ 68075581 (+)
G31596 NA non-coding downstream 73875 68096815 ~ 68097060 (+)
G31629 NA non-coding downstream 258400 68281340 ~ 68281596 (+)
G31648 NA non-coding downstream 602349 68625289 ~ 68660107 (+)
G31715 NA non-coding downstream 943539 68966479 ~ 68966810 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 175406 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 513142 67483335 ~ 67506898 (+)
G31407 NA other upstream 522343 67497203 ~ 67497697 (+)
G31355 NA other upstream 804854 67214305 ~ 67215186 (+)
G31000 NA other upstream 2182675 65828781 ~ 65837365 (+)
G31702 fam84a other downstream 803703 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 984501 69007441 ~ 69161883 (+)
G31939 NA other downstream 2173985 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 2280096 70303036 ~ 70329028 (+)
G32105 naprt other downstream 2605992 70628932 ~ 70639739 (+)

Expression


Co-expression Network