G31595


Basic Information

Item Value
gene id G31595
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68075197 ~ 68075581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42428
ccgagtggtccagcggtctaaagcgctgccactatgagtgggaggtcgcaggtttgaaccccagctcatgcagctttgccatcaagctgccggcatcagagggagcaaaattggccctgctccctctgggtgggtagatggtgctctctccccacatcactcctgcggtgatgtctgcagcacagggcgcctgtgagctgctgtatcagaaccgagccgctgtgctttcctccgagtgcgctgtgatgctgcgcggtggctgacttcacatgtgtcggaggaagcatgtgttagtcttcaccctcctggtgtgttggggcatcactagtgatagggggagtcctaatgagtgggttggcggtgtaaattggggagaaaatgggaa

Function

GO:

id name namespace
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42428 True 385 lncRNA 0.45 1 68075197 68075581

Neighbor

gene id symbol gene type direction distance location
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding upstream 32829 68023937 ~ 68042368 (+)
LOC103035042 LOC108439590 coding upstream 56206 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 145282 67878540 ~ 67929915 (+)
swt1 NA coding upstream 496116 67533815 ~ 67579081 (+)
LOC103028999 NA coding upstream 546841 67515932 ~ 67528356 (+)
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding downstream 276846 68352427 ~ 68724643 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 1128253 69203834 ~ 69215863 (+)
afg1l NA coding downstream 1168137 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 1210434 69286015 ~ 69321707 (+)
armc2 NA coding downstream 1262960 69338541 ~ 69359553 (+)
G31583 NA non-coding upstream 87520 67987433 ~ 67987677 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding upstream 212924 67860633 ~ 67862273 (+)
G31479 NA non-coding upstream 420592 67654149 ~ 67654605 (+)
G31406 NA non-coding upstream 495290 67489637 ~ 67579907 (+)
G31410 NA non-coding upstream 558163 67482593 ~ 67517034 (+)
G31596 NA non-coding downstream 21234 68096815 ~ 68097060 (+)
G31629 NA non-coding downstream 205759 68281340 ~ 68281596 (+)
G31648 NA non-coding downstream 549708 68625289 ~ 68660107 (+)
G31715 NA non-coding downstream 890898 68966479 ~ 68966810 (+)
G31720 NA non-coding downstream 962929 69038510 ~ 69039924 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 52257 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 230563 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 568299 67483335 ~ 67506898 (+)
G31407 NA other upstream 577500 67497203 ~ 67497697 (+)
G31355 NA other upstream 860011 67214305 ~ 67215186 (+)
G31702 fam84a other downstream 751062 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 931860 69007441 ~ 69161883 (+)
G31939 NA other downstream 2121344 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 2227455 70303036 ~ 70329028 (+)
G32105 naprt other downstream 2553351 70628932 ~ 70639739 (+)

Expression


Co-expression Network