G31596


Basic Information

Item Value
gene id G31596
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68096815 ~ 68097060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42429
AAGAGAACATATAACACCAGTTCTCGCCTCACTTCATTGGCTACCTGTCGAATACAGAATTCAGTTTAAAGTGCTTTTAGtagtttttaaagcattaaatggTCTGGCACCCTCTTATATTGCAGATTTGCTTACCTCCTCAGTCTCACAGCGCTCTCTGAGATCATCAGCACAGAATTTGTTGGTCATTCCTAGGGTTCGTTTGAAACTCAAAGGTGATCGTGCATTTTCAGTGTATGCCCCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42429 True 246 lncRNA 0.33 1 68096815 68097060

Neighbor

gene id symbol gene type direction distance location
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding upstream 54447 68023937 ~ 68042368 (+)
LOC103035042 LOC108439590 coding upstream 77824 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 166900 67878540 ~ 67929915 (+)
swt1 NA coding upstream 517734 67533815 ~ 67579081 (+)
LOC103028999 NA coding upstream 568459 67515932 ~ 67528356 (+)
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding downstream 255367 68352427 ~ 68724643 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 1106774 69203834 ~ 69215863 (+)
afg1l NA coding downstream 1146658 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 1188955 69286015 ~ 69321707 (+)
armc2 NA coding downstream 1241481 69338541 ~ 69359553 (+)
G31595 NA non-coding upstream 21234 68075197 ~ 68075581 (+)
G31583 NA non-coding upstream 109138 67987433 ~ 67987677 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding upstream 234542 67860633 ~ 67862273 (+)
G31479 NA non-coding upstream 442210 67654149 ~ 67654605 (+)
G31406 NA non-coding upstream 516908 67489637 ~ 67579907 (+)
G31629 NA non-coding downstream 184280 68281340 ~ 68281596 (+)
G31648 NA non-coding downstream 528229 68625289 ~ 68660107 (+)
G31715 NA non-coding downstream 869419 68966479 ~ 68966810 (+)
G31720 NA non-coding downstream 941450 69038510 ~ 69039924 (+)
G31724 NA non-coding downstream 1000231 69097291 ~ 69100562 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 73875 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 252181 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 589917 67483335 ~ 67506898 (+)
G31407 NA other upstream 599118 67497203 ~ 67497697 (+)
G31355 NA other upstream 881629 67214305 ~ 67215186 (+)
G31702 fam84a other downstream 729583 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 910381 69007441 ~ 69161883 (+)
G31939 NA other downstream 2099865 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 2205976 70303036 ~ 70329028 (+)
G32105 naprt other downstream 2531872 70628932 ~ 70639739 (+)

Expression


Co-expression Network