G31616


Basic Information

Item Value
gene id G31616
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68029478 ~ 68030990 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42453
cATTACTACATTACTGCTGCCAAATACAGATGGAGAGGAGAAACCAGTTTGAGGTGCATGTCGTTTGTGCACTGCttgttaaaattaatacattcaaAAGCCACTGTTTTACCAGCTACCAAATTATTAATGCATACATTTTATGCCATGTGACTGAAGAAAAAGGTGTGCGAGGTAAATCAAACACAAAGGCTGAATCCCAAATCAAGAATTATAAGATACCACTATTAAAATAGGAAAAATTACTAAAAATTGTccaagtgtttaatttgtgatGCAGTAAACCAACCCAACAACCTGGCAGAATAGACAggattttttaaaggaaaaaaagcaatttttaaCTCTTAGAAGGAAAAATAAAGCTgtacaaagtcattttaaaaagaacGTTTTCATACAGATCAAAAAGACGAGATCTGctgctgcaacaaaaaaaaaaagtaaattctgGGAATCAGGGAAGCTAACAGTATTGAATTTACAATATACTCAaatcacacacagaacacattaAGCAAACTAAAAGTTTTGAGCACCAAAGTGTTTAACACACAAAGTCAGTTAGTAACAAAACATTTCCATTCTGACCACTAGCATATTACGTAGAAAGTCAATGAAAAATAGATATACAGGTTCACCCAGTGAGCTACAATTGAGCAAATTTCCCCACCTTGACaagttttacatttgtttttttttttttatagcaaaaGGGCAACGCAATCTTAAAGCAAGAACTATCCAGCTATAAGCAGTTTATGAGGAAACTGCTTACTAATTAAAATATGACTGGAGCTTTCCTATTGCCTAGCAGTGTCTGTTTACTGATAAAGTCCCGCCTTGAAATATAAAGATAATTGGATTGGTGGAAATGCCGCAGGAAGGATTGCTAGTGGTAAAATGAAATAACTGTTTGATGGATCATGTCCGTCAACTGTGAAGCTTCAAATGTGACCGGTAATGGCAGAACTGCATTTCTAAAACGAGTAGATGtggatggatgtatgtatggatggatggatgtcaACAAGCTAAAGagggcaacaaaaaaaagagataagatACTTAAAGAAAAACAACTAATGACATTACGGCACTaggaaaatacacaaataaatgcaaccataatattaaatatatacaaatattttgtgACAAACAACAAAAAGTTTGGGATGGCTGACAAAAACTTTAGGACTGCGCAATTCAAATTTCCCACAGTATCAGCCCTACCTCCATAAACTAACAATACACTAGTCAGTGTGGTTGGTTGTCTGTTGGCTGACATGCTCCTTCAAATACATTaggctgtaaaataaaaatgcattagtagaagttaaaaaatgtgtattttactggCTTTGTGCATCTCAAAGGAAGCACAGGCTAGTCTTCACCTATACACCACTGGTAGCACGTTTGGTGGAGTCAAAGCTACTGATTGATAACTGGCTACGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42453 True 1466 lncRNA 0.35 2 68029478 68030990

Neighbor

gene id symbol gene type direction distance location
LOC103046744 NA coding downstream 47550 67973225 ~ 67981928 (-)
LOC103046427 LOC108439583 coding downstream 57120 67968136 ~ 67972358 (-)
LOC103045211 NA coding downstream 175705 67852557 ~ 67853773 (-)
trnat-agu_1 NA coding downstream 370827 67658579 ~ 67658651 (-)
trnai-aau_2 NA coding downstream 371225 67658181 ~ 67658253 (-)
mycn LOC108439586 coding upstream 192834 68223824 ~ 68229829 (-)
ddx1 ddx1,LOC107726609 coding upstream 308835 68339825 ~ 68351833 (-)
scml4 scml4,LOC107726459,LOC107679489,LOC107726622,LOC107601197 coding upstream 1065264 69096254 ~ 69140809 (-)
LOC111191181 NA coding upstream 1136810 69167800 ~ 69172924 (-)
ostm1 ostm1 coding upstream 1149235 69180225 ~ 69187900 (-)
G31598 erh,ERH,LOC107580641,LOC105904210,LOC106607637,LOC100699790 non-coding downstream 6591 68020087 ~ 68022887 (-)
G31573 NA non-coding downstream 86325 67942909 ~ 67943153 (-)
G31572 NA non-coding downstream 86771 67942497 ~ 67942707 (-)
G31564 LOC108439581,LOC108256302,LOC106571171 non-coding downstream 109124 67915459 ~ 67920354 (-)
G31523 hmcn1,LOC107599116 non-coding downstream 140451 67843284 ~ 67889027 (-)
G31630 NA non-coding upstream 265874 68296864 ~ 68297068 (-)
G31686 NA non-coding upstream 755410 68786400 ~ 68787002 (-)
G31782 NA non-coding upstream 1027764 69058754 ~ 69059080 (-)
G31803 NA non-coding upstream 1248678 69279668 ~ 69281508 (-)
G31817 NA non-coding upstream 1316043 69347033 ~ 69347700 (-)
LOC103046133 LOC108439589 other downstream 88765 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 144045 67855606 ~ 67885433 (-)
G31437 NA other downstream 501141 67503749 ~ 67528337 (-)
G31424 NA other downstream 597054 67423872 ~ 67432424 (-)
LOC103031958 myo6 other downstream 985160 66862465 ~ 67044318 (-)
G31622 NA other upstream 60230 68091220 ~ 68091581 (-)
fam84a fam84a other upstream 794999 68825989 ~ 68829020 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1114318 69145308 ~ 69161904 (-)
LOC103033556 LOC108410406 other upstream 2886991 70917981 ~ 71043182 (-)
G32343 NA other upstream 3057885 71088875 ~ 71089461 (-)

Expression


Co-expression Network