G31718 (sec63,LOC107726621,LOC107696131,LOC107726458)


Basic Information

Item Value
gene id G31718
gene name sec63,LOC107726621,LOC107696131,LOC107726458
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 69007441 ~ 69161883 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42575
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcatgtGCATGACAGATAGAGCGGGCACATGGGTGTGTGAACCAAGTTCAAGTTCTTATGAGTTGGCTGGATTAGTCATTGTCTTCATCATCTTCCTCAGATTCCTCAATGCCATCACTGTCTTCctgatcctcctcctcttcctcagtcTCTGGGATGTCCCACTGCGGGTGGTTATCCATAATGGCCTTTGCTTCATGCACCTCCAACTGCAGATAACACAGTTCACTTTAGCTTGACAGCTAATAAAACATTG
>TU42576
caTTTACAATGACTTTTCTTGTAAACAAAAGTGGCAGATACTGGTTTATCGGGCTATACATCACTCTCCCTGCCTGTTACACTGGGTTATACATGGTCTGGCCTTTATCAGCCTAATCAGTGGccgtatgtttgtgtgtgtgtgtgtgtgtgtgtgcaTACAAAGGTTtatattaactatatatttaatcagtttttGAGTCACAGCTTTTTATACACAGCATTCTAACTGATGCTACATTCTTCTGTGGATCTATAATACTAAAATGTCTATCAGACCGGGGAACTTTAATAGTTTGGTAGAGTAACATTTGTTTGGATGGGTGGTCAGGTGTGTCaatctgtgtgtgcatgtaatCCAAGCAGCCAGAATACTACCATTTTTCTTCCAAAGGACATAGATAGCATTATGCTtaggctaatgctactccaaaagaacaaaaacactggcttccaaaaaaaaacccttctcaaatagaaaaagaaaattaaaaatgcatggcAAAAATGTGCCACAGGGATCGAAAAAATGTCCTGTATATTTGTGTAACAAATTCATAACTGGGAAAAAGcgtgaaaaaaaatcaataggaTGAATTAGAAAGGATTATATTTGACACACATCTCTATAGTGTGAGGATATCTACCTCAGCTCCTGCAGAGAACAGATCTGATGCCACTCTAGCCACAACagaaatacactttaaaaagcaTCTGTGAACACCTCGCTAACTCATACACCCATACAGGAATAGTTAAAATGATTatactactaataaaaaaattaataacccAGTCCACAAAGAGGCTTACTCTGCCCATAATAAAAAAGCAGGGGGGGAGGCTGATTCGCAATTAAGCCCATTAGTAATCTACACAGCACCACTACAGACATTTCACAGCCTAAACAAAGAGCTTCCTCCCACTTCAGTTATCCCGCTGACACAGAGCAGACCATGCGATTGACTGTTTCAAAACCACAAGTCCAATGCCAACCAGGCCTATTCACAGCCCCGTCACACCCACCCCACAGCGAACATTATATCCTCCAAACACaaagaaatatgtaaataatcAAAACAATATTAATAGAATTCCAAAAATATGGGTTTCTTCCAtaagaagcagaagaaaaaaaaggcttAATGTTGGCCTGCCACTGTCTTCAAGACAAAGAGCTTTGAACTCATGCCATGGGAAATGTGGAAATACAATTTCAATGGCGGTTGTTTTGTGATATAAATAGCccaatgtgtgtgtacataaCCTACCATGgcattcaaatattcaaatagcCAGTATGCATTTCTGACAGCTGTGCACCAGTTATCAAAAATATATTCAGAAAAAGGGCAAGTAGTCACCATCCTTATTTAAAAGGCATATACGCAAACTGCATCATTTTATACCAAttacctaaataaatatatttgtttggaGCCAAATTGGAAAAGCGAAGTGAAACCtcccaaaatataaaaatttacaCATACTCAACCACTACAATAAGATTAAGGCATTTCACAAAGGTGGAATGTGAACTAAAAATACTAGGAAAAATTTTAAAACTACCCTGACATTGACATAGCTCAACTGTGGTTCAGGCTTCCATGtatcaaatacaaataaaaattaaaatgaggAGGAAAAAGGTTTTGGTTGAACTGTCAGATCCCCACAAAATATATCGAACTTAGTACTAGTTACCTGCTGTGGCTCTGACTCTAAATCCTAATTCCTGCTATGTCTTTATGCACAATAAAACAAGCaatggaaaaaaatcagattttcaacAAAATGGAATatatcaaaaacaaaagaatttaaagattttttttatgaaacaataAGGAAAGAAAGCAATATGAATGCAGTACACAGGTCTACCCTGGTATCAGAACTAAGAACTACAACTTTAAATCGGGACCAAGATCAAAGGTAGACTGCACTGTAGAACTGGCTGTGGAATGTGTAAAATAATTCCAGGAGAACTGCAAGAACCGTTAAGGACGTTAAGCGTCATAAGAAGAGGTGCAGTAGAGCTCCTACATCCTACTGGATCAAAACTAGAGCAAATGAGATGAGATGCATGACTAATATTTACCCCTCCAGTTCCTCAGTTGCATTGTCACTCTGCTCCCAGTACACAGCCACACCTGATTAAGCCACACCGGCTCACGCTTTTCACAGCCTGCAGTGGATCCTGAAAAATCAGTCTTTTCAGAATctgaaaactaaattaaactaaataaaacaagagGAAAGGAACTACCCATAATCCATAATAAAAAGtgacattaataaaaatgatgatcATGAGGTGTCTTTGTTTGGGGGAAGCAGTCTGTTTATTTCTCTTAACTGGTAGTTGGTCAAACACCTCTGATGAGGCAGAGTGGCGACAGCAGCTCTGCAGGCTCAAGCCCACAGTTATTTTGATAATGGAAACATAAAAACAGAGCAGACCCTCACATCAAATGATTAGACGTTTGAGTCACATAACCAatcatgtgtgagtgtgtgcaagCATGTGCAAGCATGTGTCTGGAACCAAGGCAGCGGGGGACATCACAGTCCATACCTCATATGGGCCACTTTTTTGTGGTAACATTGGTATGGCAGTTGTTTTGGgctgtgagggagtgtgtgtgtgtgtgtgtgtgtgctcatgtGCATGACAGATAGAGCGGGCACATGGGTGTGTGAACCAAGTTCAAGTTCTTATGAGTTGGCTGGATTAGTCATTGTCTTCATCATCTTCCTCAGATTCCTCAATGCCATCACTGTCTTCctgatcctcctcctcttcctcagtcTCTGGGATGTCCCACTGCGGGTGGTTATCCATAATGGCCTTTGCTTCATGCACCTCCAACTTCAGTGGCTTGATCTGATCTAATCCCATGTAAGAATCTGATCTGAGGATCACTGAATACTGATAGTTTCCTGCTTTCGATGGAGCAGGGAATTTCAGTTCAACCTCCTCTGTATCTTTAAGTGTGCACACATGGTAGGGCATGGACACCAGTGTCTGGTCCTTGCGGTCAGCAATGTAGAGCCACCACCACTCCTGCTTCTCCTCAGGGAAGTACAAGCTGTAGACTGGATGTGTGATCTTGGACTTTGTCTCCAGTAGTGCTCGCTCACGCCGCTGGatgctctgctgcagtgcttcCCACTCCTCTTCATCATCCCCTGTGATCTCATCCACCTCAGTGTCACTCTGTTTGTCACTCTCCTCATCTCTCTCACTGGGAGAGTCCTTGTTTCCTTCTGCTTCATCTGATTCGCTGCCTTTGTCAGAGagatcctcctcttcctcttttgCTACAACAGCCACTTCATTTCCTGCCACATTGCCATTGGCTTGTTTGGTCTTGTCGCCCTTGGCTGTCTGTTGCTGGGGGACCGGCCTCTTCTTAgtcagttttttctttttagactTGGCTGCTTTCTTAGCTCCTTTACTCTTATTCTGCcaaacttttgttttgtttttggcagCATCACCTTGCGCCTCCTCTGTGCTGGCCTCTTCTGCAGGTGCCTGAGGATCCTGATCCTTCTCAAAGACATCAGCCATCCTCTTCCGTGTCAAGATGACCGTAACTGTGACAATGGACCCTGCTGTTATGTTATTACTGTCTTCATCATCCAGCACTTGAAGTTTAGTCTCCATAGTAATGTGAGGGAGGCTTCCAAGGACAGCCTTGACCTCATCATACTTCTCATCTCCCAGAAACCTCAGCATGCTTCTCCTGTCCGAGTCCTTCAGACTAACCAGGTCCTGAAGACTTCGTACCttataCTTTTTGGAGATGCAGTATCTGAGGTGCTCCTCTTCAAAGTGGGGCAGCTGAAGTAGAGGAGACTTGGCCTCCTGCAGCCCTTGAACTGTCATCTGAGTCAGTTTCATGCAGTTCTCTATAGAGGTCAGTCTAGGAGCCCGGAAACCTCCTCTACTGGTGGCCATCATTGTGAGCTGGCAGCCAACATTGATCATCTCCTGGAGCAATGCAGGACACTTCTTCACCACAAACCTCTGGTcttCTTCAATGTTCTCAGACACCTCCATCCGAGCGAGGTGTGTGAGCACAAGGACACGAGCCTTCAGGCTGTAGGGGTAACAGAATGGAGGCTCCTTCTTCTTCACATTGATGTTTCCCAGCTCCCGAATGAGCTGTGGAACTTCAATGTTGTCAGTTGGTCTTATAATAGCCTCTTTGTTGCTACGTGGGTCGAATTCAAATGCTGCTGTCAGCACCATCACCaaccGCTTCATGTTCATGGTGGGTGTTTTGTACATAAAGTGCATGAAGAGCTGCGTTGTATTGATGAGGATCTGATCACCACTATAACGAATAGAACGGTACCACCATGTgccCACAACCACTGGAAGAATGACCATAAAAGCCAAACCATACACCAGTAGCACCAGCATAGAGTTTTTCTGGTCAACGATCCATGCAGGTAGAGCAATTCCAAAACTTGTGAcTCTAGGGCCATCAGGGTTCCCATAGGTTTCCCAGTTTTTCCGTGATTCCTCATTAGTTAAAGCTGAGTAAGCTTTAGCTATCTTCATGAACATGGCCTCATCTCCTCCTTTGTCAGGGTGGTATTTTAGCGACAGCACTCTGTATTGCTTCTTAATCTCAGACACAGATGCCccCGCATCCAGATTTAGGACCTCATAGGGGTTATACTCCTGGTACTCTCGATCTAATTTAGACACCTTATAGGCCAGGAAAAGAAATACTGCCCAACCAAACAAGAGGGCTGCTTTTTTTAGTGTTGGGACAACGCTTTGCTGTGATTTCATAAGCCGAAGGCGATACCACAGACATCTTCCGTGAACTCTTCGCAAGGCCTTTAAACGTAATTGTTCTGCATTCTGATCCCGCGGCCAGAGGTAATATGTGGCCGGGATAACAATTAAGCCGACGAAGGAGGTGAGGAAGTAGAAAAACGTATTGCCGCTGTCGTCGTACTGAAACTGCTGCCCGGCCATTTCGTAGCAGCACCGAATTCAGCCCCGCTTCTCCTCCGCCGCTTCACCACCCTCAACTCGGGCtgactgctctctctcttt

Function

symbol description
sec63 Predicted to enable RNA binding activity and protein transmembrane transporter activity. Acts upstream of or within endoplasmic reticulum unfolded protein response; liver development; and myelination. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Sec62/Sec63 complex. Used to study fatty liver disease and polycystic liver disease. Human ortholog(s) of this gene implicated in polycystic liver disease. Orthologous to human SEC63 (SEC63 homolog, protein translocation regulator).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42575 False 321 lncRNA 0.29 3 69007441 69148024
TU42576 True 5088 TUCP 0.43 22 69145018 69161883

Neighbor

gene id symbol gene type direction distance location
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding upstream 282798 68352427 ~ 68724643 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding upstream 965073 68023937 ~ 68042368 (+)
LOC103035042 LOC108439590 coding upstream 988450 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 1077526 67878540 ~ 67929915 (+)
swt1 NA coding upstream 1428360 67533815 ~ 67579081 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 41951 69203834 ~ 69215863 (+)
afg1l NA coding downstream 81835 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 124132 69286015 ~ 69321707 (+)
armc2 NA coding downstream 176658 69338541 ~ 69359553 (+)
cep57l1 NA coding downstream 279560 69441443 ~ 69450742 (+)
G31715 NA non-coding upstream 40631 68966479 ~ 68966810 (+)
G31648 NA non-coding upstream 347334 68625289 ~ 68660107 (+)
G31629 NA non-coding upstream 725845 68281340 ~ 68281596 (+)
G31596 NA non-coding upstream 910381 68096815 ~ 68097060 (+)
G31595 NA non-coding upstream 931860 68075197 ~ 68075581 (+)
G31758 NA non-coding downstream 293858 69455741 ~ 69546704 (+)
G31932 NA non-coding downstream 943695 70105578 ~ 70106122 (+)
G31938 NA non-coding downstream 1023728 70185611 ~ 70187725 (+)
G31993 slc22a16,LOC107693213,LOC107601215,LOC107732637,LOC107696098 non-coding downstream 1054348 70216231 ~ 70217718 (+)
G32014 NA non-coding downstream 1215814 70377697 ~ 70379706 (+)
G31702 fam84a other upstream 179869 68826643 ~ 68827572 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 984501 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 1162807 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 1500543 67483335 ~ 67506898 (+)
G31407 NA other upstream 1509744 67497203 ~ 67497697 (+)
G31939 NA other downstream 1035042 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 1141153 70303036 ~ 70329028 (+)
G32105 naprt other downstream 1467049 70628932 ~ 70639739 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other downstream 1694928 70856811 ~ 70867643 (+)
G32198 NA other downstream 1911965 71073848 ~ 71075886 (+)

Expression


Co-expression Network