G31938


Basic Information

Item Value
gene id G31938
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70185611 ~ 70187725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU42853
TTAAAGCTCAGCAGGTGGATTAATGAGTGTGCGGCTTGCAGGGATCTGGCGCTAATTCTACTGCTTTGGGGCTGCATGACGTTCAGTCTCTCAGCCTGCAAGTCAGACTGCAGTTTCAGCATATAAATCAGGTGCGTTTTtgtacaggacaaaccattcaaacatgcggATGAGCTCTCAGCACccgataattaaaaaaaaatcacacagtgtctgtctggcttaaaatagttagatacagctattaaatgaataaatcaacattcatttaaaagaccAGGGAGACGTTCTGTATGCTaacaagctagaagctaataagcttataacaacatttaataaaaacagacaaatatatataaaataggaaaataaccagctaaactaagctcaaaatgctaaatgaATTATAATCTAACAAATTCAAAAAGATCAAAACGAAATCGTGAATCCTCAAAGCAGTAGCTTAAAGacagaatataaagctttaccagattcaaaattatgaatcataattctaataaacaaggcatattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42853 True 534 lncRNA 0.55 2 70185611 70187725

Neighbor

gene id symbol gene type direction distance location
sash1 sash1 coding upstream 85245 69767400 ~ 70100366 (+)
LOC103044978 stxbp5a,LOC108436475,LOC107696120,LOC107679494 coding upstream 423636 69634635 ~ 69761975 (+)
adgb NA coding upstream 567888 69554538 ~ 69617723 (+)
LOC103025939 rab32,rab32a,LOC107679502 coding upstream 633828 69524031 ~ 69551783 (+)
LOC103045488 grm1a,grm1,LOC108436473,LOC108279026,LOC107679500 coding upstream 662996 69475842 ~ 69522615 (+)
mettl24 NA coding downstream 55814 70243539 ~ 70299011 (+)
wasf1 wasf1 coding downstream 142162 70329887 ~ 70434178 (+)
aida aida,LOC107710640,LOC107568227,LOC107704043 coding downstream 251008 70438733 ~ 70450673 (+)
taf1a taf1a coding downstream 289335 70477060 ~ 70483703 (+)
dusp10 dusp10,LOC107710641,LOC107559105,LOC107568217,LOC107739190,LOC107704023 coding downstream 301669 70489394 ~ 70505568 (+)
G31932 NA non-coding upstream 79489 70105578 ~ 70106122 (+)
G31758 NA non-coding upstream 638907 69455741 ~ 69546704 (+)
G31724 NA non-coding upstream 1085049 69097291 ~ 69100562 (+)
G31720 NA non-coding upstream 1145687 69038510 ~ 69039924 (+)
G31715 NA non-coding upstream 1218801 68966479 ~ 68966810 (+)
G31993 slc22a16,LOC107693213,LOC107601215,LOC107732637,LOC107696098 non-coding downstream 28506 70216231 ~ 70217718 (+)
G32014 NA non-coding downstream 189972 70377697 ~ 70379706 (+)
G32021 mia3 non-coding downstream 269595 70457320 ~ 70459226 (+)
G32020 mia3 non-coding downstream 272592 70460317 ~ 70463133 (+)
G32023 NA non-coding downstream 279805 70467530 ~ 70470732 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1023728 69007441 ~ 69161883 (+)
G31702 fam84a other upstream 1358039 68826643 ~ 68827572 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 2162671 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 2340977 67691441 ~ 67844634 (+)
G31407 NA other upstream 2687914 67497203 ~ 67497697 (+)
G31939 NA other downstream 9200 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 115311 70303036 ~ 70329028 (+)
G32105 naprt other downstream 441207 70628932 ~ 70639739 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other downstream 669086 70856811 ~ 70867643 (+)
G32198 NA other downstream 886123 71073848 ~ 71075886 (+)

Expression


Co-expression Network