G32082


Basic Information

Item Value
gene id G32082
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70514094 ~ 70520924 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU43048
aatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgctggtgtttcagggtgcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttatttagatctgccggagtcattagccacactctgataatgttttatattctctgttttacataaatccagtcaaaactaattccatctctctgccttcctccgagttactgactgcccacctgtctgacccgataccgagggatgttggaccctcaggctctcatgtcctctgtctggccagactggaagtttctgaagtcagctcttctccatccaccaccacagatcagctgctcatca
>TU43052
aatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgctggtgtttcagggtgcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttattcagttctgccggagtcattagccacactctgataatgttttaatattctcagttttgcataaatccagtcaaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgatgttggaccctcaggctctcgcgtctcctgtccgggcagactgatggaagtttctgaagtcagctcttctccaccaccaccacagatcagctgctcatcgaccatcttactctccactacagattacatccaagccattagtggcgctattacactcctgagtacataaacctatatggatgtataaaagactttttaaattttaatttaaaagccgtttgaccagtggtaggatggtcccccctcaaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttccttgcctccgcgctcactgggggttctgtattctgtatattctatgtttaatgttttgcctgattctttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacaccagttgtaaaaagcgctatacaaataaatttgatttgatttgatgatttgactgttgtgcaggtctgatctgcaactacaggaaatgtttggttgaggtttttgctgccaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43048 False 527 lncRNA 0.50 2 70514519 70520924
TU43052 True 959 lncRNA 0.44 2 70514094 70520924

Neighbor

gene id symbol gene type direction distance location
mia3 NA coding downstream 41510 70452946 ~ 70472584 (-)
cdc40 cdc40 coding downstream 185039 70302173 ~ 70329055 (-)
slc22a16 slc22a16,LOC107693213,LOC107602826,LOC107726421,LOC107696098,LOC107601215 coding downstream 282065 70214994 ~ 70232029 (-)
cd164 NA coding downstream 1045019 69455687 ~ 69469075 (-)
sesn1 sesn1,LOC107601436,LOC107696127 coding downstream 1075544 69361081 ~ 69438550 (-)
hlx hlx,LOC102784911 coding upstream 64971 70585895 ~ 70588997 (-)
rhpn1 rhpn1,LOC107704026 coding upstream 79904 70600828 ~ 70619887 (-)
naprt LOC107728101,LOC107746003 coding upstream 101091 70622015 ~ 70639926 (-)
c3h8orf82 cunh8orf82,LOC103038903,LOC107704038,LOC107567028 coding upstream 119548 70640472 ~ 70643325 (-)
brox brox,LOC107732498,LOC107710643,LOC107568230 coding upstream 335826 70856750 ~ 70867662 (-)
G32080 NA non-coding downstream 5691 70507457 ~ 70508403 (-)
G32075 NA non-coding downstream 28628 70484280 ~ 70485466 (-)
LOC111191251 NA non-coding downstream 142839 70367067 ~ 70371255 (-)
G31985 NA non-coding downstream 303662 70208717 ~ 70210432 (-)
G31990 NA non-coding downstream 314357 70196744 ~ 70199737 (-)
G32248 NA non-coding upstream 159017 70679941 ~ 70680789 (-)
G32261 tsta3,LOC102781768 non-coding upstream 196349 70717273 ~ 70726275 (-)
G32264 pycrl non-coding upstream 215341 70736265 ~ 70738479 (-)
G32267 NA non-coding upstream 227302 70748226 ~ 70750818 (-)
G32275 NA non-coding upstream 256225 70777149 ~ 70777850 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1352190 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 1685074 68825989 ~ 68829020 (-)
G31622 NA other downstream 2422513 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 2573381 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 2628661 67855606 ~ 67885433 (-)
LOC103033556 LOC108410406 other upstream 397057 70917981 ~ 71043182 (-)
G32343 NA other upstream 567951 71088875 ~ 71089461 (-)
G32364 NA other upstream 617562 71138486 ~ 71142338 (-)
G32492 NA other upstream 1449580 71970504 ~ 71982053 (-)
G32557 NA other upstream 1720606 72241530 ~ 72242270 (-)

Expression


Co-expression Network