G32375


Basic Information

Item Value
gene id G32375
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71254340 ~ 71257919 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU43470
TGAAAGacaaagtgttttatttagaaATTCACAGTTTCTATTGGCACTACATTTTTGTAGTTACAGTTACTCCTGTTCcaacatcaacaacaacaaaaaaaatactgtgcagCTCATCCTCACAGATTATCTGGTGTATTTGGCGCCATATACTGGCTGCATCAACAAGGGAGCCTGTGGCCACTAGAGGACACCAGAAGTGAAGAGAAGCGATGGGGAGAATAGCACTTTAAAAGGTCTACTGTAGGAAAAAAACAAGGCATGAGGAGTTCTCCAAAgtgctgagagaaagagagcctgcaccacacacacaaacacagatgcAGGTCTCCAATCACTGGGTTATAGGATATGTTAACCCACATATATTCTTCTTCTTGCACACAGTTTAAAACATCCATTCACAAAAAAGAATTACACAAATGTCATACAcattcaacaaaaaaagaaaacaaagtagAAAAGAGATCATGATAGATGCACATGAACACTAAACCCCCTCTGAATGTGGAATTACTCTCAGAACAATCCTAAACTTTCCCTTTATAATTTGCCCCCCCGAAAAGGAATTCACATTTCTTATCCTTAGAGAGAGAGTTTACTGTTTCTGTTCAGAGACGAGGTGTGAATGGATGAGTAAATGAAAAGGGACCATCTagctaaaaacaaacagaataaaactgCAGTGGGACGTAGAATGGTCCAGTGAGCGCagacacatgtacacacatatacatacatgaaGTGTATTAGAGTGAATACGAGGGAAATGACCAAGTGAGAGAGATACAGCCACAGGTACAGTGCCATGCAAGGTGAAAGgatgggaaagagagaggaagagatggGTGTGTGTTTAAAGGAAGTATCACATATATAATGATAGCAGGAAGATTAGAAATGGGACACTGACAGACACATGCACAAGCACCAGATATTACACACAAAAGCTCCAgcattccttccttccttccttcaaagAGATACCAATAAAGCATGAACTCATCAGAACAGACCCATATTGTTTAGTTTTTCACCCTCAGGTGGGCTCAGACAGAACCAGACGCACTTTATTAAACCAATGTCTCACATCTGGCTTATCACATTCAATTAAAAGTTAAAGATGGTTTGTGGAATGAAAACTCTTGGAGAGTccttaaagtgtttatttgatgaaatgtgaaaaatgtggcTTCCGGTCTGCGCTCAGACTCCAGCTTTCTCtgtattaaacaaaacatagaAAAGCAAACAAGAAAGACAAAAATCTGGGGGCTTCTGTACCATTTCATGCTCCATGTTTCATGTTAAGATGTAGatatatgtgcgtgtgtgtgtgtgtttgtgtgcgcaTATGTGTGCGTTCTACAATAAATATTGACGACACACCACAGGGACACTGGAAGGGCTAAAACACCCTGCTTGACCCAAGACCTTGAGCTCAAACTAGCTCAAGTCACATGTgacatttgaataaataaatagataaataaataaaacagtaagcGCCCACTGTAAAATCCCTGTGGGTGTGTCggaatttacagtatatatatatattatatgtatgtagGTGTTTTAAACTGGCCATTTGTTTGAATAAATGACACTCCAACATTGGCTCATGTAGTAAACAAACACGGATATATAGAGTAGAAGTAAACATGTAGAAAAAGATGATGAGTCTGATCGCAGCACAAGGATGCTTATGGATGAATATAAAGAATCAATATAGGTTTTGGGCTCTGCCCAAACCTCTTCTAGTCATCGTTgtatcattaataattaatgtctaaacaaacaaaagagaaaaacacgTGAAGTGACAGTATTTATAGGATCTGGTCAGACatacaaaagagaaaacaaaggtAAAAGAAGTTGAATCTGTTCTTCCTTCAGTTCTGCTCATAAGATTGATATAAGGTAAAGTGCCGGACATCCCTGGGCTACGATGATAAACCACAAACCACACACTGGTCCCACCAAACAACCACCAGGAACAATCAAAGGACTggagttacacacacacacccatgcaGAATATGATAgtgttaaaaacataaaaaaaagacaacaataAGCATGAACTGCACAAACCGCATTTAAAGCATTAAGCGTGAAAGGGCAGAACAGGGGGACTggtggagaaaaagagagcaggCAGAGACCTGAGGCCTGTGGTAGTgtgttggagaaaaaaaaaaaacaaaaagtaaggaGTGTGGAGGTTGGTCTTGATAGTCTCTTAACTCACACTGGTAGTATGAGTCCTCCCCTCTCATCATCCTGGCCATTAGAGAGAACAAATGAAATTTATAGATTGAATCATGTACTGGTCCACTTGAGAAGaaaggaaacaaaaacaataacataCAAACAAGCGAAAGCAATCCCACTCATACTATTCAAAAGTTAGTCTTCTTTGTGACCcccttaaaaataaaccagatttctctccaaaaatgaaagaaaaccaaaagaaaGACTCTTCACCTCGGGCTGTGTACTGTTCACCTCCTCGTGAGAGTTCAATAACGGACAAATAAAGGCACATGAAAGAGGGGAGAATCTCAGAATGAAAATAAACTTGTGTTGTAAAAGAGTGAGGGAAGGTGGTGTTTACTGTGATCATTTAGTCCAAGTTCCACTTTGTGCATATGTGGCAGAGTCTGACTCTgaatggtgagagagagagagagagacatagaacgagaaacagagagagagagagagaaacagagagagagagcaaagatcCGTCCAACAAAGGGTGACGAGTGTGCTGATGTGCTTCTAACTCAGACACGGCCGCTCACAGCCGTGCTCATCCCGAACGCCCCCACACCTAGCTCCTGTTTCCCCTTCATCAGTTCCTGCAGTGTTGGCATGACACCTGATGTCACAGGAATGGGGGCATGCAGTAGCCCTGCCCCAAATCGCCCATTTGACTGAGGCcgctgctgtttttgcagctgctgctgttgctgttgctgctgctgctgctgaagttGTTCACCAATCTTGGAGCGTCTCCGCTTGAACGACCTCTTCTCCGCCCGGTTCTTGGCCTGTGGGTAGCTTGAAGAAAGCTGACCGTTGCGCTGAGCATTGCAGCAGTACTCATCTGATGCTgtggatgaagaggaggaggaggacgacgAGGACGATGAGCCTTCGGAGCTGCCCTCAGACACAGCATCTCTGAATGAGCAGGCGGATGCATCTTCCTCGCAGGGCGACGGCAGGAAATGAGGCATATGGAGGCTATCGCTTTTAGGCCCGCCATTAGCGACCGTCACTTCTTCGACAGAGGCCCTCAGAGTCTCTGCTTTCTCTCCACCTTTCGTTTTGCAGCGCTTCTTCTGCAAACATAAGGAAAATAAGGGACAGCCA
>TU43471
CACAGTTTCTATTGGCACTACATTTTTGTAGTTACAGTTACTCCTGTTCcaacatcaacaacaacaaaaaaaatactgtgcagCTCATCCTCACAGATTATCTGGTGTATTTGGCGCCATATACTGGCTGCATCAACAAGGGAGCCTGTGGCCACTAGAGGACACCAGAAGTGAAGAGAAGCGATGGGGAGAATAGCACTTTAAAAGGTCTACTGTAGGAAAAAAACAAGGCATGAGGAGTTCTCCAAAgtgctgagagaaagagagcctgcaccacacacacaaacacagatgcAGGTCTCCAATCACTGGGTTATAGGATATGTTAACCCACATATATTCTTCTTCTTGCACACAGTTTAAAACATCCATTCACAAAAAAGAATTACACAAATGTCATACAcattcaacaaaaaaagaaaacaaagtagAAAAGAGATCATGATAGATGCACATGAACACTAAACCCCCTCTGAATGTGGAATTACTCTCAGAACAATCCTAAACTTTCCCTTTATAATTTGCCCCCCCGAAAAGGAATTCACATTTCTTATCCTTAGAGAGAGAGTTTACTGTTTCTGTTCAGAGACGAGGTGTGAATGGATGAGTAAATGAAAAGGGACCATCTagctaaaaacaaacagaataaaactgCAGTGGGACGTAGAATGGTCCAGTGAGCGCagacacatgtacacacatatacatacatgaaGTGTATTAGAGTGAATACGAGGGAAATGACCAAGTGAGAGAGATACAGCCACAGGTACAGTGCCATGCAAGGTGAAAGgatgggaaagagagaggaagagatggGTGTGTGTTTAAAGGAAGTATCACATATATAATGATAGCAGGAAGATTAGAAATGGGACACTGACAGACACATGCACAAGCACCAGATATTACACACAAAAGCTCCAgcattccttccttccttccttcaaagAGATACCAATAAAGCATGAACTCATCAGAACAGACCCATATTGTTTAGTTTTTCACCCTCAGGTGGGCTCAGACAGAACCAGACGCACTTTATTAAACCAATGTCTCACATCTGGCTTATCACATTCAATTAAAAGTTAAAGATGGTTTGTGGAATGAAAACTCTTGGAGAGTccttaaagtgtttatttgatgaaatgtgaaaaatgtggcTTCCGGTCTGCGCTCAGACTCCAGCTTTCTCtgtattaaacaaaacatagaAAAGCAAACAAGAAAGACAAAAATCTGGGGGCTTCTGTACCATTTCATGCTCCATGTTTCATGTTAAGATGTAGatatatgtgcgtgtgtgtgtgtgtttgtgtgcgcaTATGTGTGCGTTCTACAATAAATATTGACGACACACCACAGGGACACTGGAAGGGCTAAAACACCCTGCTTGACCCAAGACCTTGAGCTCAAACTAGCTCAAGTCACATGTgacatttgaataaataaatagataaataaataaaacagtaagcGCCCACTGTAAAATCCCTGTGGGTGTGTCggaatttacagtatatatatatattatatgtatgtagGTGTTTTAAACTGGCCATTTGTTTGAATAAATGACACTCCAACATTGGCTCATGTAGTAAACAAACACGGATATATAGAGTAGAAGTAAACATGTAGAAAAAGATGATGAGTCTGATCGCAGCACAAGGATGCTTATGGATGAATATAAAGAATCAATATAGGTTTTGGGCTCTGCCCAAACCTCTTCTAGTCATCGTTgtatcattaataattaatgtctaaacaaacaaaagagaaaaacacgTGAAGTGACAGTATTTATAGGATCTGGTCAGACatacaaaagagaaaacaaaggtAAAAGAAGTTGAATCTGTTCTTCCTTCAGTTCTGCTCATAAGATTGATATAAGGTAAAGTGCCGGACATCCCTGGGCTACGATGATAAACCACAAACCACACACTGGTCCCACCAAACAACCACCAGGAACAATCAAAGGACTggagttacacacacacacccatgcaGAATATGATAgtgttaaaaacataaaaaaaagacaacaataAGCATGAACTGCACAAACCGCATTTAAAGCATTAAGCGTGAAAGGGCAGAACAGGGGGACTggtggagaaaaagagagcaggCAGAGACCTGAGGCCTGTGGTAGTgtgttggagaaaaaaaaaaaacaaaaagtaaggaGTGTGGAGGTTGGTCTTGATAGTCTCTTAACTCACACTGGTAGTATGAGTCCTCCCCTCTCATCATCCTGGCCATTAGAGAGAACAAATGAAATTTATAGATTGAATCATGTACTGGTCCACTTGAGAAGaaaggaaacaaaaacaataacataCAAACAAGCGAAAGCAATCCCACTCATACTATTCAAAAGTTAGTCTTCTTTGTGACCcccttaaaaataaaccagatttctctccaaaaatgaaagaaaaccaaaagaaaGACTCTTCACCTCGGGCTGTGTACTGTTCACCTCCTCGTGAGAGTTCAATAACGGACAAATAAAGGCACATGAAAGAGGGGAGAATCTCAGAATGAAAATAAACTTGTGTTGTAAAAGAGTGAGGGAAGGTGGTGTTTACTGTGATCATTTAGTCCAAGTTCCACTTTGTGCATATGTGGCAGAGTCTGACTCTgaatggtgagagagagagagagagacatagaacgagaaacagagagagagagagagaaacagagagagagagcaaagatcCGTCCAACAAAGGGTGACGAGTGTGCTGATGTGCTTCTAACTCAGACACGGCCGCTCACAGCCGTGCTCATCCCGAACGCCCCCACACCTAGCTCCTGTTTCCCCTTCATCAGTTCCTGCAGTGTTGGCATGACACCTGATGTCACAGGAATGGGGGCATGCAGTAGCCCTGCCCCAAATCGCCCATTTGACTGAGGCcgctgctgtttttgcagctgctgctgttgctgttgctgctgctgctgctgaagttGTTCACCAATCTTGGAGCGTCTCCGCTTGAACGACCTCTTCTCCGCCCGGTTCTTGGCCTGTGGGTAGCTTGAAGAAAGCTGACCGTTGCGCTGAGCATTGCAGCAGTACTCATCTGATGCTgtggatgaagaggaggaggaggacgacgAGGACGATGAGCCTTCGGAGCTGCCCTCAGACACAGCATCTCTGAATGAGCAGGCGGATGCATCTTCCTCGCAGGGCGACGGCAGGAAATGAGGCATATGGAGGCTATCGCTTTTAGGCCCGCCATTAGCGACCGTCACTTCTTCGACAGAGGCCCTCAGAGTCTCTGCTTTCTCTCCACCTTTCGTTTTGCAGCGCTTCTTCTGCAAACATAAGGAAAATAAGGGACAGCCATTTAATGTAGGCATGGTTACAAACCACCATATATAAAACCCATCTACAGCCGTAGGAACCACCTTTATGCTGAGTGAATAGGGTGAAGACGAACGcacacatttaaattaaaatacactaCAATGTCCACAATACCTCAACATGATTCACGGACAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43470 False 3396 lncRNA 0.33 2 71254497 71257919
TU43471 True 3524 lncRNA 0.33 2 71254340 71257890

Neighbor

gene id symbol gene type direction distance location
LOC103032944 tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519 coding downstream 64365 71180928 ~ 71189975 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding downstream 77134 71174229 ~ 71177206 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding downstream 148521 71099602 ~ 71105819 (-)
trnat-ugu_81 NA coding downstream 157637 71096631 ~ 71096703 (-)
LOC103038639 ism2 coding downstream 167383 71077110 ~ 71086957 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 755336 72013255 ~ 72031640 (-)
bloc1s2 bloc1s2,LOC107697361,LOC107716556,LOC107581516 coding upstream 1140872 72398791 ~ 72402415 (-)
pcsk9 pcsk9 coding upstream 1240803 72498722 ~ 72518295 (-)
bsnd NA coding upstream 1264746 72522665 ~ 72527600 (-)
lexm NA coding upstream 1313560 72571479 ~ 72579512 (-)
G32346 NA non-coding downstream 91276 71161302 ~ 71163064 (-)
G32344 NA non-coding downstream 161127 71090501 ~ 71093213 (-)
G32326 NA non-coding downstream 225054 71026503 ~ 71029286 (-)
G32327 NA non-coding downstream 225459 71025689 ~ 71028881 (-)
G32316 NA non-coding downstream 280783 70965016 ~ 70973557 (-)
G32386 NA non-coding upstream 3076 71260995 ~ 71289235 (-)
G32389 NA non-coding upstream 21701 71279620 ~ 71280405 (-)
G32524 NA non-coding upstream 823795 72081714 ~ 72084284 (-)
G32536 NA non-coding upstream 891664 72149583 ~ 72149787 (-)
G32538 NA non-coding upstream 891901 72149820 ~ 72150284 (-)
G32364 NA other downstream 112002 71138486 ~ 71142338 (-)
G32343 NA other downstream 164879 71088875 ~ 71089461 (-)
LOC103033556 LOC108410406 other downstream 211158 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 2092436 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2425320 68825989 ~ 68829020 (-)
G32492 NA other upstream 712585 71970504 ~ 71982053 (-)
G32557 NA other upstream 983611 72241530 ~ 72242270 (-)
G32611 NA other upstream 1269864 72527783 ~ 72542447 (-)
G32714 NA other upstream 1439754 72697673 ~ 72698010 (-)
pla2g7 pla2g7,LOC108440964,LOC107553425,LOC107696191 other upstream 1546074 72803993 ~ 72813530 (-)

Expression


Co-expression Network