G32524


Basic Information

Item Value
gene id G32524
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72081714 ~ 72084284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU43652
tcagaaataatattttacatagttaattttagtgatctatacattatttatatatttaaaaggagaaaataaaacagcttGCTGAAATGATAGGACGGACTATACAATGTGCGGGGATGTGCAACATGTCGGAGGCTGTGTGGCGTGTTGGGTTGTGTAGATGTGGCGTATGCTGTGTATACGGTAAAATAATCTGGCAGAACTGTACAGCTGTTAGTGAGGACAGTAGACGTCATTTAGAGAAGGGAAAAGGCCGAAGAGAGGcgtataaagagaaagagagagagagaaaaaaaaatccacagttttctttcatgtttttttttcttcacatggTTAATAGTGCTCTGCACGAGGTCAAGGACCACGTGCAGAATCatagtgacacacacacacacacacacaaacatacatacatacgagcacacatacatgcatacacaaCACATGGCACAGAGTAACTGGTGGGGACCCACCTCCCTCCCCCTTTCCCcatacaccaaaacacacacacaagtgggGCACTTGCTGGGGGATACTTCAATTAGCGCCACCACTGGCCAAAGCTGTGAATGGCACGGCTGCTGCTGAGTGATTATGTGATTGGACGGGAGAAGAGTCAATACTAGCCAGCAGAAGAGGCTCGTTCTCCCCATCCCAAATATAAATGTGCCAAAGCCAGTGCAGTCGATGGGTCTCGACCCCAAACGACCCTGGTGACgggaaaatatatgtaaaagttCCCCCAATCCCACCACCCCTCACCTTTCTCCCCACCCCTCCCGGAAACACAACGCAGAAGCACGGCTCAGCCATGCTCTCACAACACTGCTGCAGATGGGCAACATCCATCTTGAATTCAAGATTTAGAAACCTTTTTTTGATTTccatcattttcttttctaaaacACCCCAACTCCCCCCTCAGACCAccccttaataaaaaaaaatcccagtgAAATGCAACATCTCTTGGAGCTAGGCCACTGTGCGGGTAGCTAAGGGCAGCATTGATGGGTCTAGTGCTCAGGAGTGTCTATGCATCATAATGGTGTGTGTTCAAAGCCCCCCTATTTCTCAGGGAGTGCCATACACCACAGTGTAAGTTCATTTTTCAGTCTACCATGCACTAGAAACCGCACCAAGCTCCTCCAAAGCTACACCCCTCAGACAGCGAGTGGTGACGATTTACAATGGACTCAATGGATATAGTGCTATAAGTTACTGGTCTTTATACTGTTAATATATCTGTGCTAGTAACACTGCAGGTAAAAGAATCGTTCCTATAACTAAGGAATTTGTTGTCCTATACTTAGAAAAGGCCTCagagacaagagagaaagagaaaaaagtgagacaCAAAGTGAGACACGTagacagacaaaaaaagagagagagggaggcagagagagacagacactggTCATATGACCAGCCTCACAGTCACACTCTTCTTCCTTTTGTTTTCATTCATTCAAgcatccacccattcattcagtcattCATTAGTCCAAGTTTCATATtcttttcactctgttcttttGTTTAGCCCTTATAACTCCATTCAGTGTGCTGCAAACCAAGTTGCATGCCCACTTTAGTCCACACTATTTTGGGAAGTAACAAAATCCCAAGTAACGAGTTCCTTTCTGTACGTTatatatttagctttgtttatgtgtgtgcGAACTGGGCTCAAAATGAAGAATAGCGAGAATCGTGAAtaaggtattaaaaaaaaacaacaacaataaaagagtCTCAATAGTTAAAGGTCTCTGTCTCCTGCCTCTACATTCTACTGTcagatgagagaaagagagagagaaacagcttAAGTGCTGCTGCTCCTCAGTCACAGGTGGCTGTTCAGGTTTCTTCAGAGGAGGTGGGTCGGGGAGGGTGTTAAAGATGGTTCCTCCCGCCGCCCTCCGCTCACACCATGTTGTGGTGGTTGTTCCTGTCTATGATGTCGGCCGAGGGGAGGAGCTCCTTTTTGATTGGCGAGGGCGGAGGAGTGGCGGTCTTCACTTTGGGCTTGAACAGGTCAGACACATAGAAGACctggagaggagaaaagagaagacAAAAAGGACATTGGTGATGAAGTCCCCTAAAGTTTAAAAGATTGCAGTTGAAGAGCATCATGAAGAAAAAGCTGATTTGGCAGTCACAAACAATGCTGCGATACCATTGGGAGATTGGATAGCACTGGATGCAAATGGATACAATGTGACATTGTATTTCTTATTGTAGGATGCACAGAATgtcaaaatcaaacaaaattaaacagctGTCTTGCAAAacgatgaaaaattaaaaaaaatatcaaagcaCAATACTGCTCAGGATAAATTAATAAGTCTTTTCACTTTTCACTGGCCGTTCACTGAAAGTACTTGGTTAGCAAATGTCAGATAAGTAATTTTGTTTGCCAAAAATTCAATATATTACTTATCAACTGCCTTCAGCTTGACTTTTCCCAAACTTTTTTCATCTTAACATAAAAGCAGAACCTAACCCTGACCCTGGTCCTAATCCTAACCATATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43652 True 2551 lncRNA 0.35 2 72081714 72084284

Neighbor

gene id symbol gene type direction distance location
prkaa2 prkaa2,LOC107716554 coding downstream 50074 72013255 ~ 72031640 (-)
LOC103032944 tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519 coding downstream 891739 71180928 ~ 71189975 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding downstream 904508 71174229 ~ 71177206 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding downstream 975895 71099602 ~ 71105819 (-)
trnat-ugu_81 NA coding downstream 985011 71096631 ~ 71096703 (-)
bloc1s2 bloc1s2,LOC107697361,LOC107716556,LOC107581516 coding upstream 314507 72398791 ~ 72402415 (-)
pcsk9 pcsk9 coding upstream 414438 72498722 ~ 72518295 (-)
bsnd NA coding upstream 438381 72522665 ~ 72527600 (-)
lexm NA coding upstream 487195 72571479 ~ 72579512 (-)
LOC103032851 NA coding upstream 529154 72613438 ~ 72619980 (-)
G32386 NA non-coding downstream 792479 71260995 ~ 71289235 (-)
G32389 NA non-coding downstream 801309 71279620 ~ 71280405 (-)
G32375 NA non-coding downstream 823795 71254340 ~ 71257919 (-)
G32346 NA non-coding downstream 918650 71161302 ~ 71163064 (-)
G32344 NA non-coding downstream 988501 71090501 ~ 71093213 (-)
G32536 NA non-coding upstream 65299 72149583 ~ 72149787 (-)
G32538 NA non-coding upstream 65536 72149820 ~ 72150284 (-)
G32565 NA non-coding upstream 223112 72307396 ~ 72308300 (-)
G32567 NA non-coding upstream 230057 72314341 ~ 72314797 (-)
G32571 NA non-coding upstream 238380 72322664 ~ 72322979 (-)
G32492 NA other downstream 99661 71970504 ~ 71982053 (-)
G32364 NA other downstream 939376 71138486 ~ 71142338 (-)
G32343 NA other downstream 992253 71088875 ~ 71089461 (-)
LOC103033556 LOC108410406 other downstream 1038532 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 2919810 69145308 ~ 69161904 (-)
G32557 NA other upstream 157246 72241530 ~ 72242270 (-)
G32611 NA other upstream 443499 72527783 ~ 72542447 (-)
G32714 NA other upstream 613389 72697673 ~ 72698010 (-)
pla2g7 pla2g7,LOC108440964,LOC107553425,LOC107696191 other upstream 719709 72803993 ~ 72813530 (-)
LOC103026087 NA other upstream 785424 72869708 ~ 72919297 (-)

Expression


Co-expression Network