G58252


Basic Information

Item Value
gene id G58252
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13523613 ~ 13585256 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66321
CAAGAAATCATTAAATAAAAAGGGAAAAACACTTGAAAAGACATTGATTTATTGAATTTGATACATGCATAGGTTTTTATCATGTAGTGTGTCATGTCATATAATGTACTTCATGTAATAAGATTTCACTCCATACGAAACTTCAAACAGCAGTTCTTCTCTGCTGTGAAATGGAGGTGTATGTTACAATTTTTGCACATCACTTTAGGTGTTCCTGCACACCCAGGAACCCTGCATCTTCCCTTCTTATAACACATTATTGCCAATGTGAGGTATTGTCCAAAACATCCTTGAAAAGTACCCCTTATCACACAACGTTGCCCTGAGGCAACGAAAAGAAAAACTGAATTTCTGAACATGGAAAATAAAAAAACTTCATAAAACCTGACAAAAGGCTTCTCTACACCTTCATACACACACACACACACACACACATATATATATATATATATATATATATTTACAAACTTTTATGTTAGATGTGATTAATCTCGATCAATCAATCTGACAGCAGCCTGCTCTCATTAAAATCCAATTGAAATCAATTGTGAGCCGAGTCTTAACTGTGGTGGTCATTGGTTATTTATGAGGTTATAATTAAGTTTTGATGCTGTCTTAAAAAACAGCTGCCTACGTAGGCTGTATCGATGGCAAGGCAGCTCGCTAGGTTTTGGAACAGAGCCTAATTGTTTCATCACAGGTTTGCCTACGATCACTGAACATATTGGCTATTGGCCTGCTGTAAAGGAGAAATTGCACTGCTGTAGCTTTTCTTGCTAAGGTTATGCCTGTGTATATGCGAAGAAAGGCTTGCTTTTTTACACCCGCAAGTTAGTATACCCTCCACAGAGGTGACACAGGCACTTTCCATCACTCCTCCTGAAGGAGAACATTGCTGTGATAGGGGTTTTCACACCTTTGCATCACTGCAGTATCGGTTCTTGAAAAAAAGGAGGAAACGATACACATTCTCTCTCCTCCCAAACTCTCGCTGCTGAGTTCAATAGTTAGAAGTTTGAACGGAGACGCCAGATGGAAGGAGCGAGTGTTTGCTGCGTGCCCTGGCTGGATGCCATGGAAACGGAGCAAAGGAGGCTGCTGTTGTGTGTCTGTACTGTGCTACAGAAGAGTGACGAGATTGGCATGTGTCTGGCTTCCAGCCATTGCTTAAGAGTGTGTGTATTCATTTTATATGGCACATATACACACACCATCACCTCTCACTCACACGCAGACCTGCAAGGAATCTGCACGTGCCCGTCATTCAAAGATCTGCTCATCCCCTGCCCTTTGTCTCTTAAATTAGGAAATATTTTAGCTAAGGGTATTAATGAAAATAAATAACAGAATTAACTCAGTAATTATATAAAAAATTGGAGTATGCAGAACAATGAAAACTAAGCTAAAGCTATAAATGTGCACTGAAATATAACAAAAATTAAAATTACAAAGAAAATTAGGTTTTGTATTTTCAATCCAAGTTAAATTGTCAAATTTAATTTATTTACAAAACCTGATTATCATGCCAAATATGTAATATCATATGCTGAATGAATTTTGGTGCTATGTTATGAGGAACAAAAATGAAAACTTACTGAAATTGTATGAATAAAATGTTTTTTAAAGATACAAAAAAAAAAAAAAAAAAATCTTTTTTTTTTTTTTCAATTTTGCCCAAAATCCATGCAGAAAATGTGGAAAAGTCAGCTGATTTTGTCTGTGATGCTCGTAAGCGTGTGTTGGTGTATGAACGAGACCTGAAAGGATAGTAAGAACAAACAGTCCTGTGAGAATCAAAGCTAAAAATGTGTAATATAATCTTTAGATTTGGGAAACCACATCAGATGGATTGCTTGTCAGTGATTTTTATAATATAAAAGATGCAAGATGCAAAAAAAAAAAAAAAAGATGCAAAAAAACCTCTACTGTTCAGGGAATAGCATACAAAAAAAGCACATTGCTTTTTTATATCAGTATTTTTAATAAGTTAATGTAAGATTTTTTTTTTTCCTGTCTTTAAAAAATTGTTGAAAATTTTACTTTGGTTTAATTTAAATTCTTTATGCACTGGAATGTATTATGTGTCAAATGCTTTGCTCTGACATAAAATGTTCTATATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66321 True 2122 lncRNA 0.35 2 13523613 13585256

Neighbor

gene id symbol gene type direction distance location
CI01000009_13394582_13476351 UBE2E3 coding upstream 46806 13392306 ~ 13476807 (+)
CI01000009_13194613_13197758 NA coding upstream 323912 13194437 ~ 13199701 (+)
CI01000009_12854692_12859028 NA coding upstream 662582 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 869756 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 1018719 12504380 ~ 12504894 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 111269 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 167168 13752424 ~ 13753823 (+)
CI01000009_13798741_13799037 NA coding downstream 211628 13796884 ~ 13799191 (+)
CI01000009_13811227_13837798 NA coding downstream 225820 13811076 ~ 13838395 (+)
CI01000009_13884165_13939556 NCKAP1 coding downstream 298591 13883847 ~ 13939688 (+)
G58205 NA non-coding upstream 137416 13385986 ~ 13386197 (+)
G58168 NA non-coding upstream 140509 13382604 ~ 13383104 (+)
G58179 NA non-coding upstream 165493 13357918 ~ 13358120 (+)
G58176 NA non-coding upstream 169703 13353688 ~ 13353910 (+)
G58175 NA non-coding upstream 170014 13353380 ~ 13353599 (+)
G58307 NA non-coding downstream 52028 13637284 ~ 13646396 (+)
G58301 NA non-coding downstream 160565 13745821 ~ 13748823 (+)
G58310 NA non-coding downstream 248285 13833541 ~ 13835879 (+)
G58389 NA non-coding downstream 390132 13975388 ~ 13978604 (+)
G58388 NA non-coding downstream 411569 13996825 ~ 14004082 (+)
G58028 NA other upstream 380005 13140378 ~ 13143608 (+)
G57701 NA other upstream 500475 13006643 ~ 13023138 (+)
G57691 NA other upstream 605148 12906444 ~ 12918465 (+)
G57682 NA other upstream 631274 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1087596 12432538 ~ 12436017 (+)
G58382 NA other downstream 448303 14039757 ~ 14039901 (+)
G58455 NA other downstream 661439 14246695 ~ 14258526 (+)
G58558 NA other downstream 911680 14496936 ~ 14501514 (+)
G58649 NA other downstream 1064468 14649724 ~ 14652022 (+)
G58711 NA other downstream 1181403 14766659 ~ 14773773 (+)

Expression


Co-expression Network