G32630


Basic Information

Item Value
gene id G32630
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72565009 ~ 72595678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU43786
agatcgatagatagatagatacatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatataaattAGACTATGTAGACTCACAGGGCAACAAGCATGTGTTCGGTCAGGGCTCACTGTACCACACACCAACCCTCAGAGACAGAAACAGTCTAGACTGCTCTGTAAATAAGAGCGGTAAAGAGTTAGTGCAGCTCTGTCGAACTTCAGGTCTGTACATGCTTAACGGCAGAATCAGAGGAGACTCTTTAGGGAGGTTCACGTATTGTTCAGCTCTTGGAGCTAGTGTAGTAGATTATGCCATCACTGACATGGATCCCTCCTCCTTCAACGCATTCACTGTCCGACAGCAAACTCCCCTATCAGACCACAACCAAATTAATGTGTACCTGAAATGGTCACATCAACCCAAACCAACAGCAGCAGAGTCCAATAAGCTGTACTCGGCCCCCCAGGACCTACAGATGGGCTCCAGATAGTGCAGACAAATTCATTCGAGCACTTCAATCAGATCATGTATCTAACAAAATTACTAACTTTATTAACACAGTTTTTGAAAATAACAAGAACAGTGTAAATCAAGCTGTGAATGAAATCAACAGCATAATACACATAGCATCTTCTAAGTCTgaactccagaaaaaaaataaacgaaaACAAGGCAAAAAACTGCCAAAAGAAAAATGGTTTGATCATGAATGCCAATCAATTAGAAAAGAATTAAGAAAATTATCAAATTTAAAACACAGACAACCAGAAGATCAAGACCTGAGACAAAAATACTGTGAAACtcttaaacaatataaacactCAATCAGAACCAAAAAACTAAACCATACAAACAAAACACTCAGAGACATAGAAGATTCTATCAAACAAAATCAGTTCTGGGAGATGTGGAATAACTTAAGCAAAACAAAACCACAAGAAGTACCCACACAAAACGGTGAAATCTGGAAAAATCATTTTGAAATTCTATACAAagaaatatcagaaaaaaatctaaattccaATTACAATCTGATCACACAGAAACTACAGTCACTTGAATGTGCAATCAAAGACAATCAAAACCCCCTCGATTACCCAATAACACAGGA
>TU43787
gtgtatgtgtgtCTGTGAATGAAATCAACAGCATAATACACATAGCATCTTCTAAGTCTgaactccagaaaaaaaataaacgaaaACAAGGCAAAAAACTGCCAAAAGAAAAATGGTTTGATCATGAATGCCAATCAATTAGAAAAGAATTAAGAAAATTATCAAATTTAAAACACAGACAACCAGAAGATCAAGACCTGAGACAAAAATACTGTGAAACtcttaaacaatataaacactCAATCAGAACCAAAAAACTAAACCATACAAACAAAACACTCAGAGACATAGAAGATTCTATCAAACAAAATCAGTTCTGGGAGATGTGGAATAACTTAAGCAAAACAAAACCACAAGAAGTACCCACACAAAACGGTGAAATCTGGAAAAATCATTTTGAAATTCTATACAAagaaatatcagaaaaaaatctaaattccaATTACAATCTGATCACACAGAAACTACAGTCACTTGAATGTGCAATCAAAGACAATCAAAACCCCCTCGATTACCCAATAACACAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43786 True 1138 lncRNA 0.28 2 72586500 72595678
TU43787 False 529 lncRNA 0.32 2 72565009 72595678

Neighbor

gene id symbol gene type direction distance location
LOC111191956 NA coding upstream 356873 72206947 ~ 72208136 (+)
plpp3 plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212 coding upstream 480764 72036206 ~ 72084245 (+)
LOC107197929 NA coding upstream 567368 71988157 ~ 71997641 (+)
LOC111191308 LOC108415780 coding upstream 863715 71698448 ~ 71701294 (+)
oma1 LOC107581495 coding upstream 1225709 71316242 ~ 71339300 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding downstream 8535 72604213 ~ 72610182 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding downstream 31562 72627240 ~ 72636248 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding downstream 59141 72654819 ~ 72679083 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding downstream 147340 72743018 ~ 72777057 (+)
tdrd6 NA coding downstream 191318 72786996 ~ 72803789 (+)
G32579 NA non-coding upstream 201668 72362951 ~ 72363341 (+)
G32570 NA non-coding upstream 242003 72322661 ~ 72323006 (+)
G32556 NA non-coding upstream 322198 72242485 ~ 72242811 (+)
G32539 NA non-coding upstream 414218 72150568 ~ 72150791 (+)
G32535 NA non-coding upstream 415533 72149275 ~ 72149476 (+)
G32644 NA non-coding downstream 30718 72626396 ~ 72626685 (+)
G32713 NA non-coding downstream 101771 72697449 ~ 72697765 (+)
G32716 NA non-coding downstream 105844 72701522 ~ 72701806 (+)
G32769 NA non-coding downstream 246173 72841851 ~ 72844396 (+)
LOC111191374 NA non-coding downstream 281366 72877044 ~ 72877730 (+)
usp24 usp24 other upstream 67945 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 584646 71463100 ~ 71980363 (+)
G32229 NA other upstream 1395453 71167524 ~ 71169556 (+)
G32225 NA other upstream 1423825 71137512 ~ 71141184 (+)
G32198 NA other upstream 1489123 71073848 ~ 71075886 (+)
G32641 NA other downstream 228 72595906 ~ 72596937 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 186115 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 548972 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 843378 73439056 ~ 73506987 (+)
selp NA other downstream 1392823 73988501 ~ 74016347 (+)

Expression


Co-expression Network