G58307


Basic Information

Item Value
gene id G58307
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13637284 ~ 13646396 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66383
CAAAAAAACAAAACAAAAAAAAAACATAGAAAAACTAAAACTAAAACTAGACTTTAATTCAATTTACAAGTGAAAAAAAAAAAAAAAACGCCAGTAAGACATAGTACTTATATTCAAGATGCAATATATAAGTTTTAAAATCTTATACACTGTCTACATACATTTTTATGTTGTTTCAGGGATTTTAAAATATTTTAAAGGGGACCTATTATGCCCCTTTTTACAAGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTAAAAATTCCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTATGTGTGAGCAAAAACATGCCGTTTTTGTGTGTGTCCCTTTAAATGCAATCCGGCCCCCAATCCAGAAGAGGGTGGAGCTTTAACAGCTCACACTTCGGTTGCACAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATAACAATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTTCACCGTTTTCGCTTTGTGAAAACAAAATGATGGCGCCGCAGGTGGAAACGTGCAGATTAAGGGGCGGTAATATCATAATAAGATCCCCTTCCTACATCACAAGGGGAGCGAAATCTGAGCAGCTCTTTTTTTATATGCTTGCAGAGAAAGGCATTCCAAAACAAAGTTACTGGGTTGTCCTTTTTCATGTTTTCTGGGTTAGTAGATACCCGATTATAGCACTTAAACACAGAAAAAGTCAAATTTTCATGATATATCCCCTTTAAGCATAAAATAAGACAAAAGTATTCATTAAGGATAGGATTTTTTGTGACGTTGTCAATTTAAATCTTGTTTTTTTTTTCGTGCATGACCATGATCAACTTTTAAGATGTTGATCAGATCTACAGATCTACAACTTTTAAGATGTGCTACATTAAACATAATTATTAAAGTTGAAGTGTGTCATTTTTTTATGCCACTAGTGGTAGCAAATGGAATTGCAGTCTCTTTGAGCAGCCAGATTAGGCTGCAAATAGCAGTAGTTTTGAGCTGGAAACTGGCTTGTCTGTACAATGGAAGATGGGGAAGTATTAGAAACTTGTACATTTCTGTTTGGAGATGCTTGTGGCCTAGATATTATAAACTTAAGTTTTAATATTAAATTCTGATTTATCAATTTTTGCTAATTAGAAATAGAAAACACTTGAAAACACTCTTCCACAGAAGGAAGAGTTTGTAATGAAACGAGGGTTAGTAAATGATGACAGATTTGTCATTTTTAGGTGAACTTCTTTAACTCGGTCACTGTAGACTTGAAGTACAACTTAAACTCTTTTAACGATTCTTCTTTTGTCTTTTATGTGAAACAGGATCAAAGTACCTGACTCTAACAGGCATATACACAGTTTGGGCTGGCCAGAAAACATCCCAGTTGAAGTAAAAGCGCTCCAGTCAATAAGATACACAGACTGATCCGTTTCCAAGGAGCCAAGGGGAAAGAGTCACCATGGATACGCAGGTTGACTTAATGGAAAAGCTGTTAATGTGTAACATTATCCACTCTGCTATCGAGCTATTGTACATCAGCTCATGTAAATGCCGCGCAAGCTCAGCCAAAGGCCCAGCTTCCTTCAAATGTCGAACGCATTTTTACAATCGCGTTCCGAGGGAGATTTCGCTTCCCCCTATTATCTTGTTAAACAACTCAAAGCAATTTCATGCACTGTGCACAATAGCAACTGTTGTGCTTTATGCCAAATGCACATATGAATTCAGATGGGTCACAAAAGCCTTTGGAGGAATGAGATGGACCCGGTGCATGACCCTTGAGTTCTCTCCTCTCTCTGTTTGTCTTTTCTCCTCCCTTTAGGTCTACAACAATAAAGTCCAGCTTGACGCCGGAGTGTGACCACATGCTTTGACAAGAGCACCAAGAGCACATTATGTGTCCGGAGTGGAGCGCCGAGGGCTTCCCGGGCTCTGATTGACCTGCCTAGACTAATCTTTCAAAAGAGGGTTTAAGGACACAAGGAGTCTATTCCAGTTCAACTCGACGACTACATTGGATGCAAGTAGACTGTAGTACAGGTGCTACTATTGTTGCCCGCACGTTTGGTCTGTGGCCTGGCCCGACCGCTCGCTCTCTGACCACAGGGTTTAATCTGTCAGCTGGGCGGCCGCACCTCATGTGTCAGCGCACATCACATGGCTTGTCAGAAAAACACGCCGATGCTGCGTATGGCATTCAGAGCTCACCTTGAATAAAATCACAACGGGGATTGAGGGTCTGGGTTTTCTTTTTCGGACCGTTCACCTTTTGTGCTGAGTGTCAGCTGGGACACACCCTCCATTGTGCCGCCTCCCTGGGAAACACCAGGCCGGGATCCGCTGGGCTGCTGTAACAGATGGAGTTCCCATTGACAAGCATTATACGACTGACAGACTGCAACGGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGAAGAAACAAAGTCACCTACATCTTGGATGCCCTGGGGGTTTTCGAGAACCGGAGAATGAAGAGTTCTGACGCATTTGGAAGGACACCTGTCTCCCGTGCAGCACAGCGAAGCGCTAGGCAGGCCGCTGGCCTGTCTTGGCAGTGAACGCTAGCGAGAGGAGCACAGATAATTACAAACTCCAGGGAGGCCGTAGGACCAACCTGTTCCTCCAGTCTGATCCAGCAGGTCCTTGCGGCCAACACCACCTCTTTCAAGACCCCCTCCGACCCCCCTACCATCAGGCACACCACATAATGATATGGTCATCACACAAAGGAGATGGTGCCCCTCGGCTCTCTCAACAAGCGTACCTTATAATCCAGACCGTGGTGTTTATTCATGACTTTTGTGTGTAGCCAGGATGTTGTTGACACACCTAAAACATCATATTTGTAGATCTGATGCATTTTTGAGAAATTATTTAATTATGATACAAAATTCAAAATTATTTAATTATGATACTCTGTTCCAAAACCTAGTGAGCTGCCTTGCTGTCTACTTAGGCAGCACTCTGAGTGAAATAGAATGATCTACATAGGCAGCCCAATGAGTTATACAAATAGCTCTATCAACTTGACTAGCAATTGACCCTTCGCCGGGAGTTTGATTGACAGGAGATCTAACCAATCGCCAAATCCGCCATTTTGTCCGACAAAGCAGTCAGGGGAGTTAGTAGATTTACGTTGGTGGACTTGAACTTAAAAAATTGCGTGTACTGACATCTTTCCGCGGTTGAAGCAACATTACTTCTGATGTTCATTCATGTTTATTTGATGCTATAAATTAATTAGTAAGAATAGATGATCGGTTCACGAGCCGCTTGAGCTGAGGCGCTACAGCGATCTGTCACGACACATTAAAGAGCCACAAAACAGTATTTATTGTTTACATTTCTTTAAAAATGACAAAATTTGAGACTTTCATATCAAAAGTAACTTGCTCTGTCTTGTCTGTCGACGCGTTGTCAGTGTCCTCTTTGCTCCGCCACGTATTTTCACTGCGTTAGAGCGGCATGGCTTGTCGGACGTAGCAACAGTAACTTAAGGGGGCGGGTCTTTGTGAACGGTCAATTGATAGAATTTTGTGTTCGCTAGTAAACAACACTCTAATAAACATAAAAATACACTACGAAATACAGTAAGATTATGCTCACCAAGGCTACATTTATTTGATCCAAAATATAGTAAAAACAAAAATATTGTAAAATATTATTACAATTTAAAATAACTGTTTTCTATTTTAATATATTTTCAAATGTAATTTATTTCTGTGATCAAAGCTGAATTTTCAGCATCATTAATCCAGTCTTCAGTGTCACACGATCCTTCAGAAATCATTCTAATATGCTGAGTTGGTGTTCAAGAAACATTTCTTATTATTAGTGTTTAAAACAGTAATTCATATATTAATATTCTGTGAAAATCTCTTTTTTCAGGATTCTTTGATGAATAGAAAGTTCAAAAGAACCTTGATGAAAAAAGTATTAATGTCTTTAAAATTAAAATCTAACTGAGCACAAACTTTTGAGCAGTAGTGTACACAGCACACAAAATGTTGGGTAAATGGTTCTGTTAAGTATTTCTGCAAAAAAGGCCCAGTTTTACTAATGATTTATTTGTATTTAATTGTTATTTAGAGGTATTTCTAGGTTATTATATTCGTAAACTTTTAAGTCTATTGAACAGGTAGATTTTCCAGTCTACTGTATTAGTCAGCTTTCTAATCTATTCCATTTCCTTGTATAAAAGGAGAATTCAACAACGATATGTGACGTGCTGCGAGACTGGAGCAAAGAACCGCTGGCTGGATACATTATAGCTTGTTTAATTTGTTTGTTTTAATCTTCCAGGACCACAAACATCTGAGATTGTAAGATTGCTCAATAAAGGAGAACTTTTGATAATAATTCTCAGTTTGAGACATCACTGTTCTAACCAGACAAAGCTGCAAGCTCTTCAACCTATCCTAATCAGAATAGAAAGGGTTTCTAATTCACAAGTTTTTTACAATTTCTTTTGCTTTGTCTATCATTTTGGATGGAAATTTTCTCACCAAGCTTTTTGCAATGCATTATTAGACTGCCTTCTCTGCAAAGGATGCATGCTGCCACAGAATTTGGCAAAAATAAAGTATCTTAGAAGGTGGAATAATTATGCTGCCCATCTCTTGAAGTAGCCTTGCATCAAGAGCGCACGTAAAATACTAGACTAACTAGGTTCAGGAACAGAGTAATTGTGTCCAATTCATTTCAGACTTGGCCAGTCTTTATTCAATAAATGTCAGCAAACACAATAAAATATAAAGCGAAGCAAATGTTGACCAGGTTAATGTTTGCACATCATAAATGTATGTCATAAAATTCACTGAAGCTCCAAGATAAAATAATTATAAATGCCTAATGCTTGATTTGTGCCCTTATTTTTTATAACTGTTCTGATGTGTGAACGTACCGCTGAGGATCTCTTTAAGGCTTTTGAACCAAGTCTCACAGTGGTCCACGCTCAGGTTGTTGAGGTGGATGGCATGGTCCTTGAGTTTGAGCCCTTTCTTCTTGCACTGGAAGAGTGTGATGCCCAGCAGAGTCCCGCCCGTCTGCTGCCCCACGGAGCGTCGCCGCTTCACCTTCACAGCAAACACATCCTTCAGCTCCACATACTCCTCCTGCTTCCTCACATTACGGTCAGCTAAAGCAAACACACAAGAGACATTAAAGTCATGTTACACACTTTTCTCCTCCTGACCACTTGTCATGTGTTTTTTTTAATGCTAAAAAATAATTACATTTTTATCATTTCACCCTATTTGACCTTTAAAGACACAGCAGTAATAAAATGTTTAATTGAAAGACTGTAATATATAAATGCCAATGTGAAGTGAGTTTTTTTCTGCACTTATTCAAATGCTGTAGGTTTGCATTCATAACTAGTACGAAACGACTTGCAGCTCGTTTTGTATGTTGACTTTTTTTTTTTCTTCTTTTGACTACAGAGAAACTGCACTTGAAAATTAAAATACTTGAAAGGGATAGTTCACACAAAATATGAAAATTCTGTCCTCATTTGCACTCTTCAGTACCAACGGAGCCCCTAAAGAGACATGGTGATGGAAAAAATATGAGATCGGAGAGGAAAAAAATATTTCAATGCGTTTGTGTTCTCTCGCAAAAGTTTTGCATTCCCTCACAAAAACTTTCGCATTCCCCCAAGATATTTTGCGTTTTATAACCATACGCAGAGCTTCTTGGCAGAACGAAAACATTTTGCGAGTGAATGTAAAGTTTCTGGGGGGACGCAAAACATTTTTCGAGAGAACGCAAAAGCATCGACCTATTATTTTTCCTCCCATCTCATAGTTTTTTCCACCACCATGTCCCTTTAGGGGATCCGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66383 True 5916 lncRNA 0.39 3 13637284 13646396

Neighbor

gene id symbol gene type direction distance location
CI01000009_13549003_13580198 ITGA4 coding upstream 57051 13549003 ~ 13580233 (+)
CI01000009_13394582_13476351 UBE2E3 coding upstream 160477 13392306 ~ 13476807 (+)
CI01000009_13194613_13197758 NA coding upstream 437583 13194437 ~ 13199701 (+)
CI01000009_12854692_12859028 NA coding upstream 776253 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 983427 12646484 ~ 12653857 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 50129 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 106028 13752424 ~ 13753823 (+)
CI01000009_13798741_13799037 NA coding downstream 150488 13796884 ~ 13799191 (+)
CI01000009_13811227_13837798 NA coding downstream 164680 13811076 ~ 13838395 (+)
CI01000009_13884165_13939556 NCKAP1 coding downstream 237451 13883847 ~ 13939688 (+)
G58252 NA non-coding upstream 52028 13523613 ~ 13585256 (+)
G58205 NA non-coding upstream 251087 13385986 ~ 13386197 (+)
G58168 NA non-coding upstream 254180 13382604 ~ 13383104 (+)
G58179 NA non-coding upstream 279164 13357918 ~ 13358120 (+)
G58176 NA non-coding upstream 283374 13353688 ~ 13353910 (+)
G58301 NA non-coding downstream 99425 13745821 ~ 13748823 (+)
G58310 NA non-coding downstream 187145 13833541 ~ 13835879 (+)
G58389 NA non-coding downstream 328992 13975388 ~ 13978604 (+)
G58388 NA non-coding downstream 350429 13996825 ~ 14004082 (+)
G58384 NA non-coding downstream 365509 14011905 ~ 14018473 (+)
G58028 NA other upstream 493676 13140378 ~ 13143608 (+)
G57701 NA other upstream 614146 13006643 ~ 13023138 (+)
G57691 NA other upstream 718819 12906444 ~ 12918465 (+)
G57682 NA other upstream 744945 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1201267 12432538 ~ 12436017 (+)
G58382 NA other downstream 387163 14039757 ~ 14039901 (+)
G58455 NA other downstream 600299 14246695 ~ 14258526 (+)
G58558 NA other downstream 850540 14496936 ~ 14501514 (+)
G58649 NA other downstream 1003328 14649724 ~ 14652022 (+)
G58711 NA other downstream 1120263 14766659 ~ 14773773 (+)

Expression


Co-expression Network