G32746 (sf3b6,SF3B6)


Basic Information

Item Value
gene id G32746
gene name sf3b6,SF3B6
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72781826 ~ 72786360 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU43922
ataatttagacattttaataACAAAAGTATGTGGTTACATATCCCAATAAGTCATTCGGAAATCACTTATTAACCAACATcttacagtgttaaacaaatgctgtccaaaaaaatacatgtatctAATTTTTGCCAACATTGTGTTTGAACACAGAAGTTCTTCAAACTGTGTCAGCATTTCttaatgaatagaccaatagaaatgctccagaactgtctaaaatgaaaaactgacttttactgaaaaaaaaaacaaaaaaaagtttttcattCTCTGTAAAGCGACTATTCTGAATACACATTTTTCTTTGGACAGGGATGATATTCTGGCCCAAAAAATTGCTTCACCTTCACAATATGAAGTACATAAAGAGTATGCTCCTTTTAACTGTACAAATTTCAGGGTTTATCTTTATGCTtgctttaaacagtgtaaaaaataaaacaatataagagagagaaagagtggaagggggggggggggcacagagaaacaaaaaagagaaaactactTTGGCGGGTCTGTATTTATGCCATATTTCTCTTTGAGTAGTTTCAGctgctcttcttttttctttgtgtccATTTTCTGGAATGcTCTGTTTGCATTGTAGTACAAAACAACCAAGTATCTGTTGCAGACGTTAAATCCAGAAAGGTGGTCACAGGCATTCTTTGCATCAAAGATGTCTTCATAAACTACATAGGCAGTTCCTCTGGTCTCTGGTGTGTTCCCAGTTCGCGCGTTTCGCTGCTTGCATCGCCATGATCGAAAATCCTGATTAATGTTCCGCTTTTACACTGAACTAAACAGATACTCTGAACTCTCAGCGAGCTCCTCACCAACTCCCACACTACGCACTGACTTCAGGCGCACGATTACGCACTTCCGTGTAGCCGACA

Function

symbol description
sf3b6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human SF3B6 (splicing factor 3b subunit 6).

NR:

description
PREDICTED: splicing factor 3B subunit 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43922 True 903 lncRNA 0.37 3 72781826 72786360

Neighbor

gene id symbol gene type direction distance location
LOC103032851 NA coding downstream 161846 72613438 ~ 72619980 (-)
lexm NA coding downstream 202314 72571479 ~ 72579512 (-)
bsnd NA coding downstream 254226 72522665 ~ 72527600 (-)
pcsk9 pcsk9 coding downstream 263531 72498722 ~ 72518295 (-)
bloc1s2 bloc1s2,LOC107697361,LOC107716556,LOC107581516 coding downstream 379411 72398791 ~ 72402415 (-)
LOC103029590 NA coding upstream 61189 72847549 ~ 72865625 (-)
LOC103026697 NA coding upstream 255108 73041468 ~ 73082008 (-)
tnfrsf21 tnfrsf21,LOC103398585 coding upstream 305215 73091575 ~ 73127688 (-)
ptchd4 ptchd4,LOC107553442,LOC107732383,LOC107732542,LOC107690039,LOC107601530 coding upstream 485200 73271560 ~ 73302026 (-)
spats1 spats1 coding upstream 642808 73429168 ~ 73436214 (-)
G32737 visl1,LOC106589078,LOC106571602 non-coding downstream 7440 72753708 ~ 72774386 (-)
G32683 NA non-coding downstream 129047 72652355 ~ 72652779 (-)
G32668 NA non-coding downstream 155248 72626326 ~ 72626578 (-)
G32665 NA non-coding downstream 171683 72608705 ~ 72610143 (-)
G32660 NA non-coding downstream 181400 72600205 ~ 72600426 (-)
G32758 NA non-coding upstream 15264 72801624 ~ 72803096 (-)
G32760 NA non-coding upstream 16887 72803247 ~ 72823798 (-)
G32816 NA non-coding upstream 55489 72841849 ~ 72842490 (-)
G32828 NA non-coding upstream 90700 72877060 ~ 72877774 (-)
G32824 NA non-coding upstream 157209 72943569 ~ 72945672 (-)
G32714 NA other downstream 83816 72697673 ~ 72698010 (-)
G32611 NA other downstream 239379 72527783 ~ 72542447 (-)
G32557 NA other downstream 539556 72241530 ~ 72242270 (-)
G32492 NA other downstream 799773 71970504 ~ 71982053 (-)
G32364 NA other downstream 1639488 71138486 ~ 71142338 (-)
pla2g7 pla2g7,LOC108440964,LOC107553425,LOC107696191 other upstream 17633 72803993 ~ 72813530 (-)
LOC103026087 NA other upstream 83348 72869708 ~ 72919297 (-)
LOC103029909 LOC108412949 other upstream 135546 72921906 ~ 73033786 (-)
G32914 NA other upstream 601502 73387862 ~ 73388612 (-)
G32946 NA other upstream 766055 73552415 ~ 73552883 (-)

Expression


Co-expression Network