G32769


Basic Information

Item Value
gene id G32769
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72841851 ~ 72844396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU43953
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaacacct
>TU43954
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaattgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaacacct
>TU43958
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaca
>TU43959
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactaagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacattagcaattgcctagcaacagcttagcaaccttTTCAGAAATaatagcaaccgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacatttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaacaaaagtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacaattttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacatttttagatttcagcgtttaatcaaacaattttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacatttttagattccagcgtt
>TU43960
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccaattagcaaccacctgaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacattagcaattgcctagcaacagcttagcaaccttTTCAGAAATaatagcaaccgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacatttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaacaaaagtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacaattttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacatttttagatttcagcgtttaatcaaacaattttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacatttttagattccagcgtt
>TU43961
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaattgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccactt
>TU43964
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccaattagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaca
>TU43965
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacattagcaactgcctagcaac
>TU43967
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacattagcaattgcctagcaacagcttagcaaccttTTCAGAAATaatagcaaccgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttttaGCATTTAGCGTTAACAGCAAATCAATGAGtcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTT
>TU43970
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccaattagcaaccacctgaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaca
>TU43972
aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43953 False 310 lncRNA 0.34 2 72841851 72842494
TU43954 False 547 lncRNA 0.48 2 72841851 72842494
TU43958 False 393 lncRNA 0.48 3 72841851 72842866
TU43959 False 1096 lncRNA 0.36 4 72841851 72844221
TU43960 True 1203 lncRNA 0.36 5 72841851 72844221
TU43961 False 483 lncRNA 0.38 3 72841851 72843051
TU43964 False 318 lncRNA 0.36 3 72841851 72842866
TU43965 False 349 lncRNA 0.35 3 72841851 72842677
TU43967 False 905 lncRNA 0.41 4 72841851 72844396
TU43970 False 360 lncRNA 0.39 3 72841851 72842866
TU43972 False 300 lncRNA 0.48 3 72841851 72843051

Neighbor

gene id symbol gene type direction distance location
LOC103025272 LOC108440976 coding upstream 10236 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 19574 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 38062 72786996 ~ 72803789 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding upstream 64794 72743018 ~ 72777057 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding upstream 162768 72654819 ~ 72679083 (+)
opn5 opn5 coding downstream 375130 73219526 ~ 73247185 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 970574 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 1035270 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 1063466 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 1101682 73946078 ~ 73954704 (+)
G32716 NA non-coding upstream 140045 72701522 ~ 72701806 (+)
G32713 NA non-coding upstream 144086 72697449 ~ 72697765 (+)
G32644 NA non-coding upstream 215166 72626396 ~ 72626685 (+)
G32630 NA non-coding upstream 246173 72565009 ~ 72595678 (+)
G32579 NA non-coding upstream 478510 72362951 ~ 72363341 (+)
LOC111191374 NA non-coding downstream 32648 72877044 ~ 72877730 (+)
G32787 NA non-coding downstream 100418 72944814 ~ 72945464 (+)
G32793 NA non-coding downstream 136616 72981012 ~ 72984863 (+)
G32778 NA non-coding downstream 202606 73047002 ~ 73079574 (+)
G32806 NA non-coding downstream 217309 73061705 ~ 73062665 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 55488 72781793 ~ 72786363 (+)
G32641 NA other upstream 244914 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 344787 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 861488 71463100 ~ 71980363 (+)
G32229 NA other upstream 1672295 71167524 ~ 71169556 (+)
cd2ap cd2ap other downstream 300254 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 594660 73439056 ~ 73506987 (+)
selp NA other downstream 1144105 73988501 ~ 74016347 (+)

Expression


Co-expression Network