Gene
RNA
| Item | Value |
|---|---|
| gene id | G59457 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 13680978 ~ 13681722 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67698 | False | 607 | lncRNA | 0.40 | 2 | 13680978 | 13681722 |
| TU67696 | True | 355 | lncRNA | 0.45 | 2 | 13681230 | 13681722 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_13667246_13668040 | NDF1, NEUROD1 | coding | downstream | 12381 | 13666453 ~ 13668597 (-) |
| CI01000009_13585375_13664189 | CERKL | coding | downstream | 16789 | 13583450 ~ 13664189 (-) |
| CI01000009_13350460_13383813 | NA | coding | downstream | 296309 | 13350157 ~ 13384669 (-) |
| CI01000009_13273365_13305127 | CWC22 | coding | downstream | 375851 | 13273365 ~ 13305127 (-) |
| CI01000009_13233918_13237052 | ZNF385B | coding | downstream | 443926 | 13233350 ~ 13237052 (-) |
| CI01000009_13761020_13794137 | PDE1A | coding | upstream | 78388 | 13760110 ~ 13794188 (-) |
| CI01000009_13878935_13880850 | DUSP19A, DUSP19 | coding | upstream | 194620 | 13876342 ~ 13880850 (-) |
| CI01000009_13946619_13952884 | NA | coding | upstream | 264777 | 13946499 ~ 13953721 (-) |
| CI01000009_13963789_13974296 | DNAJC10 | coding | upstream | 281227 | 13962949 ~ 13974296 (-) |
| CI01000009_13975122_13976026 | NA | coding | upstream | 293377 | 13975099 ~ 13978614 (-) |
| G59363 | NA | non-coding | downstream | 353594 | 13326545 ~ 13327384 (-) |
| G59292 | NA | non-coding | downstream | 409532 | 13270845 ~ 13271446 (-) |
| G59274 | NA | non-coding | downstream | 455616 | 13207082 ~ 13225362 (-) |
| G59275 | NA | non-coding | downstream | 474374 | 13198502 ~ 13206604 (-) |
| G59473 | NA | non-coding | upstream | 18870 | 13700592 ~ 13787413 (-) |
| G59472 | NA | non-coding | upstream | 118276 | 13799998 ~ 13819996 (-) |
| G59470 | NA | non-coding | upstream | 144764 | 13826486 ~ 13864603 (-) |
| G59489 | NA | non-coding | upstream | 202250 | 13883972 ~ 13931681 (-) |
| G59488 | NA | non-coding | upstream | 257723 | 13939445 ~ 13940628 (-) |
| G59097 | NA | other | downstream | 1391460 | 12288217 ~ 12289518 (-) |
| CI01000009_08858198_08860555 | NA | other | downstream | 4820415 | 8856310 ~ 8860563 (-) |
| G55814 | NA | other | downstream | 5252966 | 8425821 ~ 8428012 (-) |
| G53515 | NA | other | downstream | 8175730 | 5502395 ~ 5505248 (-) |
| G52828 | NA | other | downstream | 9449509 | 4217420 ~ 4231469 (-) |
| G59490 | NA | other | upstream | 351842 | 14033564 ~ 14037873 (-) |
| G59811 | NA | other | upstream | 1180675 | 14862397 ~ 14887464 (-) |
| G59941 | NA | other | upstream | 1450382 | 15132104 ~ 15132503 (-) |
| CI01000009_15318811_15390382 | TNS1 | other | upstream | 1694538 | 15318811 ~ 15390382 (-) |
