cd2ap (cd2ap)


Basic Information

Item Value
gene id cd2ap
gene name cd2ap
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73144650 ~ 73196220 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44108
CGCGGAGTTTTGGTGCCGTGTCTGTAGCTAGATGTGTGGCACTAGTTTAGTTTCGGGAAAATCCAAGAAAGGTGGAGACTTGTGGATAACTTCCTTAGCGGTGAACAGGAGAACACAGCGGCGATAAGAGGCGCAGCTGTGGGGCGGTCGACGGGTGGTCTCTCGGGCAGAGGCGAATGGATTTATATCGAGAATAAACTTGGTGGAGAGCAGCTCAGTGGCACGGGGACGCGCGAGCGGGACAGAcagatatacatacatatattatacactGCTAGCATCCAGGTGGCTAGCTAACGTCAGCTATAGGAGGGGAGACAGTCCTGCCTCAAAGAAGGACAGTATGGTTGAAGTGGTGGTGGAGTATGAGTATGAAGCTGCCCATGAAGATGAGTTGACTCTCAGGCAAGGAGACATAATCAAGAATGTTCGGCGAATTGAGGAagagggatggatggaaggTGACCTTAATGGACGAAGAGGCCTTTTCCCAGACAACTTTGTCAAGG
>XM_007245401.3
CTCGCGGAGTTTTGGTGCCGTGTCTGTAGCTAGATGTGTGGCACTAGTTTAGTTTCGGGAAAATCCAAGAAAGGTGGAGACTTGTGGATAACTTCCTTAGCGGTGAACAGGAGAACACAGCGGCGATAAGAGGCGCAGCTGTGGGGCGGTCGACGGGTGGTCTCTCGGGCAGAGGCGAATGGATTTATATCGAGAATAAACTTGGTGGAGAGCAGCTCAGTGGCACGGGGACGCGCGAGCGGGACAGAcagatatacatacatatattatacactGCTAGCATCCAGGTGGCTAGCTAACGTCAGCTATAGGAGGGGAGACAGTCCTGCCTCAAAGAAGGACAGTATGGTTGAAGTGGTGGTGGAGTATGAGTATGAAGCTGCCCATGAAGATGAGTTGACTCTCAGGCAAGGAGACATAATCAAGAATGTTCGGCGAATTGAGGAagagggatggatggaaggTGACCTTAATGGACGAAGAGGCCTTTTCCCAGACAACTTTGTCAAGgaagTAAGAAAAGAACCAGTGAAAGAGGAGGTGAAAGAAGCCAAGGAGGTGAAGGAGGCAAAGGAGACGAAGGAGGTGAAAGAGGTGAAGGAGGTGAAGGAGGTGAAAGAGAATGCGCAACCCCAGCGAAGGTCGGCTGGGAACGTAGCCAGTTTGGTGCAGAGGATCAGCACTTATGGCATCCCAACAGGAGGTCTAGGCTTCCAGCCCCGTTCCTCCAAAAAGAAGAAGAAGCGTCAGTGCAAAGTCGTGTTTGAGTACGTACCCCAGAATGAGGATGAGCTGGAACTGAAGGTGGGCGACATCATCGAAATCACTGAAGAGGTTGAGGAAGGCTGGTGGAGCGGAAGTATGAATGGGAAGTCTGGTCTTTTTCCGTCTAACTTTGTCAAAGAAGTCGAGATGaacgaagaagaagaaatcaGCGATGTTCCCGATGATCCAGACAGTAAAGATGAGGCCATGAGCCCAACTTCTCCTCACCCTGGAAATGGGGTTATTGCACAGCCTAAAAAGGTCAAAGGAGTCGGCTTCGGAGACATTTTCCGAGACTCTGTGAAACTCAAAGTGCGACTGCCGTCAGAGACTGAggacaagaaagaaaaaCCAATTCCATCATTGCCATCTGCTGCTAAGCCCACCAATTTGAGCACATCAGACGCTCAGAAATTGGAGAAAGATGGTGAAAGCAAAGGAAAAGtaAAGGAATACTGCAAGGCTACCTTTGCTTACGAGGCTACGAATCAGGACGAGCTGGATATTAAGGAAGGGGATGTCATTCATTTACTGAGTAAGGACACAGGAGAGCcaggctggtggagaggagaacTGAGTGGAAAACAGGGAGTGTTTCCTGACAATTTCGTGGTGCTGCTGTCAGAGTCAGACAAAGAGCCATTGGCATCCAAAGGCTCTGTTAAACAATCACCCAAACAAGAACCAGAGGAGAAGCCAAAGAAGCCGCCTCCCCCATCCAAATCCACAGTGCTGAAGCCCGAGGTCCCCAGCGCTGAAAGAAAACCTCCACAGCCACGACCTGAAGATAAAGTTGACAGGGCTATTCCAGAAAAACCTGCCAAGCCTGCTGCCCCCATTGTTCCCCCCAAAAAGCCTGTACCCCCTCCAGGCAAAGGACTGATACGTCCAGGATCTTTGACCCCAAAACGTCCAGACAAACCTCTGGCTCCATCTCCAGTAGCTAAGCACAATGGAGAGGTGCCTCACCTTCGACCAAAGTCCGATTTAGAGCCGACGTTACCCAGCAAACCAAAAACCCTGTCGGGAGACTGGGCGGAGAAAGTCGTCGAATCAGATCTCATGAGTTTCGATGATGTCTCCTCTACCTCGGAAAAACTGTCTCATCCAACTACAAGCAGACCAAAGATGCCCGGCAGACGGCTTCCGGCCCAGTTCGGTGGTCACTCCCCAAGCAAGGAGGCCAGTGAGAAAGTTCAGAAaacagaggaagaggaggtTCCAAGACCAAAGTCCTCAGAGTCATGGAAGCCATCCCTCCCAACACCAACACCTGCTGTGCACAATAAAGTGGTCAGCACCTCCACTCCTGAGCCCAAACCAAAAGCTGAGGGTGAGGAGGAAAAAAGAGGCGAGGTGGAGGAGCTCCGGACTCAGCTGAAGGAGTTGGCGCTCTCCATAGAGTTACTAAAGACGCAGCAAACGAGGGAGCTTTCTGAACTGAGAAATGAGCTGGACGAGGAGCGGTTGAAACGGGTGGCCCTTCAGctggagatagagaaattaaaaaagcaGGTACAATCAACGTGAGATCAGCGATCAAGCCTGAAAGCCCTCCTCCTGTCCCTTTGCTGGTGGATGGAAGCCCCCAGAAGTGACGAATATCATTCCCATAATCCTTATAGTCACTGACTTACTCCACAAATTGTAAAATTTACATTTGCACATAATGAGGTTTTTAAGGTATAAAATGGTGTAATTAAGACAGATGTATatgtctttctatctctctctctcttctctctctctctctctctcgctctctctttcactgtgtctctatctctctctttttgtttgcCAACAACGATTGAGGCCTTATTATATACTACTGTGCTGGATATGCAACCTCTGCATTCTTTTGAGAATGTGGCTGAATTTGCAAATTTAATACTACTGAAGCTGTATAAGTAAAGGAGGggattcttttctttatttttatgacattGGGTAGATTTTGTTTCCCTTTTTTAAGCTTTTGTGATTACAGCAATAATCGTTCCATGTTAGCCTCTTTAGATGACTTGGGAATATATGGTGTACTCCTGAtgctttagttatttttttttttcttttttttttctgataatctGTTAAAAGGGAGATAGGCCTgtattatgtttgtttgtttttttattttatttctaacatTCCTATCCAGGGTGACACTATTGTGCCTGTTTTACAAGTGTTAATACTGGGAGCTTTCATTTATATCCTCAGAATTACagtaatgaaaatatatatttatggtcTAGTGATTGcagaaaatggttaaaaactgtaTGTGTTTTATGTATCATGGATGAGTTATTGACTTATTCTCAGATGACAGTTCTTTAAGCAGTAggtgatataatataatataaaaatgactgCTGGTTTAATGATCTCCCCAACACTTCAATACCTTTTCCTGAGCAGATGATCTAATTATCCAGTGTGTAACATAGCAGGCAAGCTAATGCTGTCCAGTGATGATCCAGTCAGGTTTGAATTTAGGACCAGTGTGAACCTAATGTTTCTGACACGGTGGGTGTAGGAGCATCCAGTGGTTGTTCTAGTATGTCTGATTTGCGCTTCACCATCTGCAAAAGAGCAGCATTTTGGAGAGCAGTGGCTCTAATAAATCTGCAGTGATGCCAGAACCAACACAGACCTGTAGCAAAGAAACAGTTTTAGCCAAGGCATTTATCCTAAAAGTTGCATCGTTTCATTCAGATGTTCCACTTCACCCTTGTTTCACCCATGTGTCTGGACAAATGGTGATTAAACCACACCCTACCCACCAGCATCCAACAATTATTAAGTGCTTTTGCTTGCTTGCACAATCCCTCGATCTAAAAGATGGCTTTTCCCGGATTTAAAATCCCTATTCTAAATGCCAAACACTATGGATGGCCTTGTCAACAGACTCTCAGTAGACTGAAGCTGCTGCCACATTAGACTGTATCAATACATATTGGATAGATTTATGTAACCACGTCTGTCTTACTAGCAATTGGACCTTGTTCTTCATTCAAGTACACTAAAAGTGTATCCTTTCCTCAGGCTTCTTATTCCTGTTAAAGCATTCCACATCAGGGACcctgtgtgtgcatgcgtgtctgcgtgcgtgcgtgtgtgcgtgtgtctgcgCGTCAGAAAGCATACAAATCtctgtatgtgtttagttttttttcctcatccCCACCAGAGCAAGATAACATCTAAAACGTTTACAATAAACAAATCCAATGCATCAAACTTGTGTCCAATCCAGATTAAATCCAGATATTCTGCtattcacatatatattttctccACATGAAAGGATCTATGTAAGTGAATTGGCGtaaatacattctttttttttgctttgtttggtTTAGAAACTGATGTGGACATATTCAGCATCTCTCCAAGTGATCTTGTTTACATGATTTTGAACAGACATGCATGAACtgagattttgtttttgtttatttttttttgttccaactgAATAAATatcttttatttacagaacGTGA
>XM_022666236.1
CTGAACATTAGCGTTAGGCTGCGGTAGAGTTTCTAACAGAAAGTCATGGATAATGAAGAGgaagTAAGAAAAGAACCAGTGAAAGAGGAGGTGAAAGAAGCCAAGGAGGTGAAGGAGGCAAAGGAGACGAAGGAGGTGAAAGAGGTGAAGGAGGTGAAGGAGGTGAAAGAGAATGCGCAACCCCAGCGAAGGTCGGCTGGGAACGTAGCCAGTTTGGTGCAGAGGATCAGCACTTATGGCATCCCAACAGGAGGTCTAGGCTTCCAGCCCCGTTCCTCCAAAAAGAAGAAGAAGCGTCAGTGCAAAGTCGTGTTTGAGTACGTACCCCAGAATGAGGATGAGCTGGAACTGAAGGTGGGCGACATCATCGAAATCACTGAAGAGGTTGAGGAAGGCTGGTGGAGCGGAAGTATGAATGGGAAGTCTGGTCTTTTTCCGTCTAACTTTGTCAAAGAAGTCGAGATGaacgaagaagaagaaatcaGCGATGTTCCCGATGATCCAGACAGTAAAGATGAGGCCATGAGCCCAACTTCTCCTCACCCTGGAAATGGGGTTATTGCACAGCCTAAAAAGGTCAAAGGAGTCGGCTTCGGAGACATTTTCCGAGACTCTGTGAAACTCAAAGTGCGACTGCCGTCAGAGACTGAggacaagaaagaaaaaCCAATTCCATCATTGCCATCTGCTGCTAAGCCCACCAATTTGAGCACATCAGACGCTCAGAAATTGGAGAAAGATGGTGAAAGCAAAGGAAAAGtaAAGGAATACTGCAAGGCTACCTTTGCTTACGAGGCTACGAATCAGGACGAGCTGGATATTAAGGAAGGGGATGTCATTCATTTACTGAGTAAGGACACAGGAGAGCcaggctggtggagaggagaacTGAGTGGAAAACAGGGAGTGTTTCCTGACAATTTCGTGGTGCTGCTGTCAGAGTCAGACAAAGAGCCATTGGCATCCAAAGGCTCTGTTAAACAATCACCCAAACAAGAACCAGAGGAGAAGCCAAAGAAGCCGCCTCCCCCATCCAAATCCACAGTGCTGAAGCCCGAGGTCCCCAGCGCTGAAAGAAAACCTCCACAGCCACGACCTGAAGATAAAGTTGACAGGGCTATTCCAGAAAAACCTGCCAAGCCTGCTGCCCCCATTGTTCCCCCCAAAAAGCCTGTACCCCCTCCAGGCAAAGGACTGATACGTCCAGGATCTTTGACCCCAAAACGTCCAGACAAACCTCTGGCTCCATCTCCAGTAGCTAAGCACAATGGAGAGGTGCCTCACCTTCGACCAAAGTCCGATTTAGAGCCGACGTTACCCAGCAAACCAAAAACCCTGTCGGGAGACTGGGCGGAGAAAGTCGTCGAATCAGATCTCATGAGTTTCGATGATGTCTCCTCTACCTCGGAAAAACTGTCTCATCCAACTACAAGCAGACCAAAGATGCCCGGCAGACGGCTTCCGGCCCAGTTCGGTGGTCACTCCCCAAGCAAGGAGGCCAGTGAGAAAGTTCAGAAaacagaggaagaggaggtTCCAAGACCAAAGTCCTCAGAGTCATGGAAGCCATCCCTCCCAACACCAACACCTGCTGTGCACAATAAAGTGGTCAGCACCTCCACTCCTGAGCCCAAACCAAAAGCTGAGGGTGAGGAGGAAAAAAGAGGCGAGGTGGAGGAGCTCCGGACTCAGCTGAAGGAGTTGGCGCTCTCCATAGAGTTACTAAAGACGCAGCAAACGAGGGAGCTTTCTGAACTGAGAAATGAGCTGGACGAGGAGCGGTTGAAACGGGTGGCCCTTCAGctggagatagagaaattaaaaaagcaGGTACAATCAACGTGAGATCAGCGATCAAGCCTGAAAGCCCTCCTCCTGTCCCTTTGCTGGTGGATGGAAGCCCCCAGAAGTGACGAATATCATTCCCATAATCCTTATAGTCACTGACTTACTCCACAAATTGTAAAATTTACATTTGCACATAATGAGGTTTTTAAGGTATAAAATGGTGTAATTAAGACAGATGTATatgtctttctatctctctctctcttctctctctctctctctctcgctctctctttcactgtgtctctatctctctctttttgtttgcCAACAACGATTGAGGCCTTATTATATACTACTGTGCTGGATATGCAACCTCTGCATTCTTTTGAGAATGTGGCTGAATTTGCAAATTTAATACTACTGAAGCTGTATAAGTAAAGGAGGggattcttttctttatttttatgacattGGGTAGATTTTGTTTCCCTTTTTTAAGCTTTTGTGATTACAGCAATAATCGTTCCATGTTAGCCTCTTTAGATGACTTGGGAATATATGGTGTACTCCTGAtgctttagttatttttttttttcttttttttttctgataatctGTTAAAAGGGAGATAGGCCTgtattatgtttgtttgtttttttattttatttctaacatTCCTATCCAGGGTGACACTATTGTGCCTGTTTTACAAGTGTTAATACTGGGAGCTTTCATTTATATCCTCAGAATTACagtaatgaaaatatatatttatggtcTAGTGATTGcagaaaatggttaaaaactgtaTGTGTTTTATGTATCATGGATGAGTTATTGACTTATTCTCAGATGACAGTTCTTTAAGCAGTAggtgatataatataatataaaaatgactgCTGGTTTAATGATCTCCCCAACACTTCAATACCTTTTCCTGAGCAGATGATCTAATTATCCAGTGTGTAACATAGCAGGCAAGCTAATGCTGTCCAGTGATGATCCAGTCAGGTTTGAATTTAGGACCAGTGTGAACCTAATGTTTCTGACACGGTGGGTGTAGGAGCATCCAGTGGTTGTTCTAGTATGTCTGATTTGCGCTTCACCATCTGCAAAAGAGCAGCATTTTGGAGAGCAGTGGCTCTAATAAATCTGCAGTGATGCCAGAACCAACACAGACCTGTAGCAAAGAAACAGTTTTAGCCAAGGCATTTATCCTAAAAGTTGCATCGTTTCATTCAGATGTTCCACTTCACCCTTGTTTCACCCATGTGTCTGGACAAATGGTGATTAAACCACACCCTACCCACCAGCATCCAACAATTATTAAGTGCTTTTGCTTGCTTGCACAATCCCTCGATCTAAAAGATGGCTTTTCCCGGATTTAAAATCCCTATTCTAAATGCCAAACACTATGGATGGCCTTGTCAACAGACTCTCAGTAGACTGAAGCTGCTGCCACATTAGACTGTATCAATACATATTGGATAGATTTATGTAACCACGTCTGTCTTACTAGCAATTGGACCTTGTTCTTCATTCAAGTACACTAAAAGTGTATCCTTTCCTCAGGCTTCTTATTCCTGTTAAAGCATTCCACATCAGGGACcctgtgtgtgcatgcgtgtctgcgtgcgtgcgtgtgtgcgtgtgtctgcgCGTCAGAAAGCATACAAATCtctgtatgtgtttagttttttttcctcatccCCACCAGAGCAAGATAACATCTAAAACGTTTACAATAAACAAATCCAATGCATCAAACTTGTGTCCAATCCAGATTAAATCCAGATATTCTGCtattcacatatatattttctccACATGAAAGGATCTATGTAAGTGAATTGGCGtaaatacattctttttttttgctttgtttggtTTAGAAACTGATGTGGACATATTCAGCATCTCTCCAAGTGATCTTGTTTACATGATTTTGAACAGACATGCATGAACtgagattttgtttttgtttatttttttttgttccaactgAATAAATatcttttatttacagaacGTGA

Function

symbol description
cd2ap Acts upstream of or within glomerular filtration and pronephric glomerulus development. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis and focal segmental glomerulosclerosis 3. Orthologous to human CD2AP (CD2 associated protein).

NR:

description
CD2-associated protein isoform X3

GO: NA

KEGG:

id description
K13738 CD2AP; CD2-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU44108 False 509 lncRNA 0.51 2 73144652 73158991
XM_007245401.3 True 4277 mRNA 0.44 19 73144650 73196220
XM_022666236.1 False 3827 mRNA 0.44 18 73161688 73196220

Neighbor

gene id symbol gene type direction distance location
LOC103025777 mep1a coding upstream 296836 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 313035 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 322373 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 340861 72786996 ~ 72803789 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding upstream 367593 72743018 ~ 72777057 (+)
opn5 opn5 coding downstream 23306 73219526 ~ 73247185 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 618750 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 683446 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 711642 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 749858 73946078 ~ 73954704 (+)
G32778 NA non-coding upstream 65076 73047002 ~ 73079574 (+)
G32806 NA non-coding upstream 81985 73061705 ~ 73062665 (+)
G32793 NA non-coding upstream 159787 72981012 ~ 72984863 (+)
G32787 NA non-coding upstream 199186 72944814 ~ 72945464 (+)
LOC111191374 NA non-coding upstream 266920 72877044 ~ 72877730 (+)
G32885 NA non-coding downstream 66095 73262315 ~ 73264493 (+)
G32886 NA non-coding downstream 68780 73265000 ~ 73265399 (+)
G32905 NA non-coding downstream 151977 73348197 ~ 73348620 (+)
G32939 NA non-coding downstream 345512 73541732 ~ 73541987 (+)
G32949 NA non-coding downstream 374773 73570993 ~ 73571378 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 358287 72781793 ~ 72786363 (+)
G32641 NA other upstream 547713 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 647586 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 1164287 71463100 ~ 71980363 (+)
G32229 NA other upstream 1975094 71167524 ~ 71169556 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 242836 73439056 ~ 73506987 (+)
selp NA other downstream 792281 73988501 ~ 74016347 (+)

Expression


Co-expression Network