G32885


Basic Information

Item Value
gene id G32885
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73262315 ~ 73264493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44128
TGAAAATTGAACCGGTTTtcatataaaagaaaatgtacatCGTCATAATATTTATAGCTTTAGCATAGCAGGCAGTAGAAAACAGTTTACAATGAAAATATTCATAGCATTCAAATGCATACCTCTATTAAATTCAGACTTAAACATTCCTTTACATAATCGGCTCACTATGGTCTCTAGGGTCTACTTTTTTGGCTATTTTAGTTCATGTTGCACGCTACAAATTGTTTGTTCAGAAATGAGAATTCAGTTAAGCTGCATAAGTGACTGGTTGATCACTTAATGGAAATGGACAGTGTTCTGGGTTTCACCGCTGTGTTAGTGGAAGACGTGTACATTAGTTGGGTTTTTATGGCCATATGTACTGCAGAACTTTTATTATGTAATCTGTAACGTGCTAGTTATCAGAGTAATGCCTTTGCTATTTGcctttacacaaaaataaaacctCAGGTAGTCATTCCTTCAGCGATGGAAATATTAAAAGCGTgtgctttaaaaacaaaatgaacacaAGATCTGTGCATAAACCCAAATATTTCAACAGTTTCTATTgtccttcctttttttcttttctaatttcctttgttttgtttttttctgtcttctGTTCGGCGACCACGACATGCACATAAACAGATTTTCTGTACAGCTCATCTGGCAAGCTCCAGCTAAGCGAAGAAGCTTTTTTTCCCATTGCTTTCTCACAGCAGTCTTTAAAGAGCACTGAAGGAACAGAGAGCAAGACGAAATACAGACTCGCTGCAGATAAGTTATGTAACCCAATTGAGGCAGTTCATTGAATTAACAACCTGCAGTGACTGAGCATCTGCACCGTAGTCAGCGACAGGGAAAAACAGAGGTGGGGTGGAGGGGAGATTAAGAAAGGCTGTGCGAAAACAAgtcacaaaacaacagaggcTGGGTTATTGAACAAGATAGAGCCAGAAATAGCcctaaaaaacaacagcagcaaagCCCACAGATGTATTCCTACATTCTGTCTTCTTCCTCCACTGATCATATTTGGTCACGCATCTTACATTGACCAAATACAACTACACCAAGCGTTAATAATGCCACTTTTATTTGGGCAAAAAAATgctaattgttttaaaaaaagttgtaatCAACTCATATAGGACTGTTACTAGccattatattgtaatattgtaagtGAAACATGTATTTAACAACTAACTGactgtgaatttttttttgaattAGATTTAACTGAAACATAAATCCAATAAGATATATGTAGTACTGTAcagtcacaaaaaaaactattaaaagattattaaaaaattcaTTGTTTGAATGTATTCACTTCCATCAGCAGATCACCTGATATAATTTAATGAAAGACTGATTAGATAAACCAGGTACTGGATAGTAACTATGGATACAGTTAAAACACAAAGAATCACATTATATTGTTGTATATTTGTAGAAAGCAGAAATGACTGTGTGTAACAAGATTCAAATTGTTAGCAATATTATTACAGTAACATAATTGTTTAGCCATACAATCATAATCCTTAATCCTTAAACTAAGAACATGCTATCATGTGAAGAAGTTACGACACCCCATGAAAACCTATTGacttgtttaatttatttaaacatgcagtatGGACATTTGGTATCATTTTACAAATTAGACATAATTATGCCTGTAATTATGTAGGAAAGTGTTTCCCCACTCCTCTAAGCAGAATTCTCTCAGCTGTATCCTTTCTCTTATACAATGAAGAATTTACTATGAATCAGTCCCTGCTACAGCTAAAAGTCATTctcaccaccatgcttcacagttagTACTAGGTTCTTCTACTTAAATGCTGCATCAATCTTGGTCTAGGTGTTCTTTTTTTAGATAGGAAGGTTAAGAGCTACTTCTGGTCCCATGATGACTTTTTAGGATTGTTGGAGATTCTTTATGCTCCTCTCTTGGGCAGATCTTGCTACAACAGCCTAAGCTGGTGTGTTGGCAGTAATTTCACCCGTAAATTGTTTTATGCAGAATGGAATGTCAGTTGACTCTACATCCTTCTTCCTGAAGACCTCACTGACTTCAATAATCaatatcaaaccaaactaatgtTTGAGGTTTCAATAAGACATTTAGACTCCTCCAATGCCCTCTCTAATCACATGTGACAAATTActcaaaata

Function

NR:

description
PREDICTED: stimulated by retinoic acid gene 6 protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44128 True 2179 lncRNA 0.33 1 73262315 73264493

Neighbor

gene id symbol gene type direction distance location
opn5 opn5 coding upstream 15130 73219526 ~ 73247185 (+)
LOC103025777 mep1a coding upstream 414501 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 430700 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 440038 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 458526 72786996 ~ 72803789 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 550477 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 615173 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 643369 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 681585 73946078 ~ 73954704 (+)
sell NA coding downstream 735090 73999583 ~ 74004379 (+)
G32778 NA non-coding upstream 182741 73047002 ~ 73079574 (+)
G32806 NA non-coding upstream 199650 73061705 ~ 73062665 (+)
G32793 NA non-coding upstream 277452 72981012 ~ 72984863 (+)
G32787 NA non-coding upstream 316851 72944814 ~ 72945464 (+)
LOC111191374 NA non-coding upstream 384585 72877044 ~ 72877730 (+)
G32886 NA non-coding downstream 507 73265000 ~ 73265399 (+)
G32905 NA non-coding downstream 83704 73348197 ~ 73348620 (+)
G32939 NA non-coding downstream 277239 73541732 ~ 73541987 (+)
G32949 NA non-coding downstream 306500 73570993 ~ 73571378 (+)
G32951 NA non-coding downstream 327584 73592077 ~ 73592311 (+)
cd2ap cd2ap other upstream 66095 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 475952 72781793 ~ 72786363 (+)
G32641 NA other upstream 665378 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 765251 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 1281952 71463100 ~ 71980363 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 174563 73439056 ~ 73506987 (+)
selp NA other downstream 724008 73988501 ~ 74016347 (+)

Expression


Co-expression Network