G32960


Basic Information

Item Value
gene id G32960
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73630287 ~ 73633629 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44228
acTTTGTACAACATAAGGTTTGACCTTTAGGTCAGGAAATCTGAACTATTGTGACAGTTTGTAATTTCATATACCTCCATTACACTGGAAGACGCACCATTTTATGAGAAACGACTGTTTGAATTGCTGACCGAAAACAGACAATATTAcaagaacaaaataaacaaataaggatAATAGAAACGTGCTCAACCATcgagtaaaaaaattaaataatttgcaaCATTAAATATCTAACAAAATGTTAACTAAATTTACTAAAATccataaaagacaaaaatgaacaaaacatatGTACACTGCAGTGGAATAACATGGTATTTGCTAGTTTAATTTTTCCTGCTGGACTCTGATCTACAGTGGGCTTTTATtgggaaaaacattaatgattaaaaatgaattaagctGACAATCATTCGCTTTGCGTTAAGTACTGGGTAAAAATATCCATTCCTTAAAGAAACAGATTAGCTACAATCGAAAAGGTTGCAGGTTCCTGATTGATGACCCCATTTTcacaaaataacagtaaaatattcAAAGCAAAATAAACTCATATGTgagattttttgtttgtttacagaaattaaaaaacaaaatcatcaATTTACATTTAGCATTTAATGTCAGTCATTCAGCTGTTTAATTTGCCAAGCACAACCCACACAAAGCTTGCACCTTGGCAAATTAAAGGGAtgaaaatacctttttttttacttcatttaaaaaaatgctattttaaaatgCACACTTCCTCATAAGACTGTTGCAACAATCATTTAATTACACAAAATAATTAGAAATGCATCAATTATgcactttaataaaatatagcCTCCATAAAGACTACCAAAAAGAGACCCAGTAGCTAAAATAGAAATAGACAACCAGATATCTTTCATGTGAATTTTGaataatatttaacaaaatGATTCTCCCACAACGCATAAAAGGCTGTGGATCACCAAAATGATCAGCAATCTAACCTTTTCTTCAGGGTAGAAGAAACTGACAACAGACTTGAGGTAGCAAAGCCCAATCTTAAACTTTGGATAAAAGACCAAACCAAAagcaaaaataatcaaaaaatatttacataaaaaatttaAGACAAATCTTCTAATGAATTCTTCTCACAAAGCACTGGTCCTGAGAAAGAGCATAACTGCCATCTTACTATACAAATACACGGCATTTATATCCcatcatatataatatacaaaagCTTTTTTACCAAAACGGTAATGTTACAAAATAGTTCAAAATTAAGAAGCAAAGCAAAATGTAATACTTCAAatatggaagaaaaaaaacaaacacggATGATCAATTGTtcgagaaaaaaaacaaaaacaaacaaaaccacacacactaattACACCCACTGACCCAATTGACAGTACTGCATGTCTAAAATTCGCAAACCCAGACCTGTATTTCCAGCGGGGGCACGTTCATCTTCAGAAGCACAGCGGGAGCGGATAAACAGGTAGATGCTGAGAAGGATGGAGAGGAGTAGAGCTGAGGTGTAGAACTGCAGAAAATGAGCATGGACGTAGCTAAGATCCACCTCGTAGTACACAGCACCACCAACTGCCAATGCACTGATGATCAGTGCAGAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44228 True 1625 lncRNA 0.38 2 73630287 73633629

Neighbor

gene id symbol gene type direction distance location
opn5 opn5 coding upstream 383102 73219526 ~ 73247185 (+)
LOC103025777 mep1a coding upstream 782473 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 798672 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 808010 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 826498 72786996 ~ 72803789 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 181341 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 246037 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 274233 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 312449 73946078 ~ 73954704 (+)
sell NA coding downstream 365954 73999583 ~ 74004379 (+)
G32959 NA non-coding upstream 9420 73620566 ~ 73620867 (+)
G32951 NA non-coding upstream 37976 73592077 ~ 73592311 (+)
G32949 NA non-coding upstream 58909 73570993 ~ 73571378 (+)
G32939 NA non-coding upstream 88300 73541732 ~ 73541987 (+)
G32905 NA non-coding upstream 281667 73348197 ~ 73348620 (+)
G32961 NA non-coding downstream 667 73634296 ~ 73636692 (+)
G33041 NA non-coding downstream 299530 73933159 ~ 73933805 (+)
G33043 NA non-coding downstream 301517 73935146 ~ 73935885 (+)
G33051 NA non-coding downstream 322255 73955884 ~ 73960904 (+)
G33054 cunh1orf112,c25h1orf112 non-coding downstream 333590 73967219 ~ 73970910 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other upstream 123300 73439056 ~ 73506987 (+)
cd2ap cd2ap other upstream 434067 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 843924 72781793 ~ 72786363 (+)
G32641 NA other upstream 1033350 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 1133223 72403534 ~ 72497064 (+)
selp NA other downstream 354872 73988501 ~ 74016347 (+)

Expression


Co-expression Network