G33051


Basic Information

Item Value
gene id G33051
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73955884 ~ 73960904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44343
AAGATATCAATCACACGCAGGAGCGATTCCTTTAAATAAGCTATTATAAACAAGACTGTACTATTACAGATAGACATCCAATTTGCATTGGTGTAATGACTAATACTCTAAATAACAATCCGTAGGCtccaataaaagttgtttacaaGTCCATCAATAGAACCTGAATCATCTAAAATTTGCATTAACCAAAGACTGAGCATCATCAAAAAAATGACATGGgagtaataaaaatgagaaaatgtttCTCTTATAAACTTAAGGGACattttcaaaaaacataaagctgGTTTTGTATTGTGTTGAAAGATGTGCATCAGGTTTTGTCAGTTGAAGGAGTGCTGATGTGGCTGCTGATGAGTGTCTGCAGGGCCTGGAGCCTGTTGTTACCCACTGTGGCCAGGGTGAGGTTGTGTTGGGTGTTTCTACTGCCAGCAGTGCTTTAAGGGCACTTTCTGCTGTCTGCAGGTAACGGTCATACTCCTCCTCCCTGCTGGTCTCTTGGCGTGGCCGCTTTGCACATGGCTCTTCATCAACAGATACATCTACAGGTGTTTTTTCTTCAATCTCCAAACTCTCAATATGCCTTTCCATCACACTTGCTTCTGCCCTCAGCCTTTCCACACAGACCCCTTCAGCCTCCTGTGCTGTGACGGCCTTACTGAGAAAATTTACTACTTGGTTCTTTGTCTCTTCTGATGTCAGACTTTGAGAGATGACCTCCTCATGATTTGTGACCTCAGCAAAAATGGCGAAGGCCTTCAGGGCGTGCTGACGAATCAACCAGGAATTACAAGCCAGTAGAGTGCTGAACAGGGAACTGAGTCTAGGCAGCACCTGAGACTGAATATCTGAGGGAACAAACACTTTCCCCATGGAGGCCAGAAACTCCAAAGCAGCCAAGACCAAGTAATCAGGGCACTCCTGTAATTCTAGGACACTCAGGCAGGAAAAtgcCTGAATTATGGCATGTGGTTCTAGATTTTTAATCAAGATCGCTGAAATGGACAGAAGCACACTTAAGGTATTCTGAAGAGAGGTATGGGCCTGCACCTGAAGAGCACACATCCGTCCCCACAGCTGGTGAATAATTTTCATTGAAGAACCTAAATATTCAGCCTGCAGGGGCTCCCCTCGGACCACCACCAGCATGCAGCCCAGTGTCTTATTCAGTGTGTGCACTTTCCCCAGTCTGTAGCCTGTGGCCTGCCAGGAGTGCAGTGCTGACTGCACTGTGTTTAGCACCTCTCTCTCCACACGTAAACGCACCTCAGAGCAAAGACTCCTGAGTAGAGCCAAACGCCACACACACAGGTTGTCCTCCTCAGATGGAGAGAAGCGTTCAACAAACTCCATCTGGTGGTTTGGAGTCATGAGGAAGAGCAGGCGTCTCAGCAGAAGGCCTAGGTGGGCCAGTC

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU44343 True 1418 lncRNA 0.46 9 73955884 73960904

Neighbor

gene id symbol gene type direction distance location
scyl3 scyl3,LOC104956565 coding upstream 1180 73946078 ~ 73954704 (+)
LOC103035930 tpr coding upstream 24516 73907862 ~ 73931368 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding upstream 71456 73879666 ~ 73884428 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding upstream 135061 73814970 ~ 73820823 (+)
opn5 opn5 coding upstream 708699 73219526 ~ 73247185 (+)
sell NA coding downstream 38679 73999583 ~ 74004379 (+)
LOC103039489 NA coding downstream 136275 74097179 ~ 74126080 (+)
G33043 NA non-coding upstream 19999 73935146 ~ 73935885 (+)
G33041 NA non-coding upstream 22079 73933159 ~ 73933805 (+)
G32961 NA non-coding upstream 319192 73634296 ~ 73636692 (+)
G32960 NA non-coding upstream 322255 73630287 ~ 73633629 (+)
G32959 NA non-coding upstream 335017 73620566 ~ 73620867 (+)
G33054 cunh1orf112,c25h1orf112 non-coding downstream 6315 73967219 ~ 73970910 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other upstream 448897 73439056 ~ 73506987 (+)
cd2ap cd2ap other upstream 759664 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 1169521 72781793 ~ 72786363 (+)
G32641 NA other upstream 1358947 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 1458820 72403534 ~ 72497064 (+)
selp NA other downstream 27597 73988501 ~ 74016347 (+)

Expression


Co-expression Network