LOC111191425


Basic Information

Item Value
gene id LOC111191425
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73796463 ~ 73868538 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44385
aaaccCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGGGCTGCTGAGGGCTGGGGACCTGAGATAAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGCAGGATTTGGTATCCACAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGAGATTCAATTGTTAGACATTTAAAAGTATCTAAGAGTAATGGCACAATTTCATGTCTTCCAGATGCTTGCATGCTGGTAGTCGGCAAGCGGCTCCCTGGGGCGCATTGCCAAAGCAGGAACCCCGGCACCATCGCCCTCCACGTGGGGATGAGCTTTCGGGAGCGACCGGCCCCGTTCCACAGAGACAGGCTTCTCTCTGTGAACATCGAGGCGGTGCTACGCTGAGACTGACTGTCTCTACCCAGTCACACCAGCCAAtatgttttca
>TU44391
aaaccCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGGTAAGAAATATACATTTCTttccttttaaaacatttgtgttgTTACGTATAATAACAATTACATCAGGCGTTATCAGATCGAGGTTCAaattatcaaatcaaattgttggcggggaccatttaaaaaatcactGGATATTGGTGTCCGTGCTAACTCTATACCCTTGAGTAAAGTAACCAAGTACTAATACTTCATTACTTTTCATCCCTTTGCTTTATCTTAAATGATTGCCACCTTTTGAACTAAAATAATTCCTAATCAGTTGTCTATTCCTgactagaaaactaaaaataacagttttaaatgttttgcttttttttaagctggAGAGAACTACTGCAGGATTTCTCCAGACtcactgtaattacacatggTCACCATGACACACTAAATAGGACAGGGGTGTTTTTCCTGAAAGtgatcaatcttagcgaataacaaacaaactaacgCATGACGTGAgaaaagaacgagccagttcttcAAGTGTTTCCCATAGAGCTTTGCAAAAAGTTCAAAGagcgtctttgttgactcctccccttTGCAATTCCTGTAAATCCTGTATTTCCTTGGGAATTccatataagtgtgtgtatggtgcAGTAACAACTGGGTTACAGAATGCACAGACTTGGAGTCTGCACACTTGCTAAGACCGTGACCATCACCAGTTGTCTGCAGGAAACCACCTGTAGCATAAAATCAGTGGGCAGTTAGGTGGTACATGGTGGAACTCTGTGGAACTGAGTTGACCTAGAggcacacatatatacagtgaggaaaatgAACACCCTGCGACTTTGCAAGTTCTCTCACTTATAAATCATTGAGGGGTCTGAAATTTTCATCTTTGGTGCATGTCCACCGTGAGAGACATAATAAAAATCCGGAAAtcacaatttattattatttttaaataatttatttaatttacaactTTCTCAGCAGGATTTGGTATCCACAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGAGATTCAATTGTTAGACATTTAAAAGTATCTAAGAGTAATGGCACAATTTCATGTCTTCCAGATGCTTGCATGCTGGTAGTCGGCAAGCGGCTCCCTGGGGCGCATTGCCAAAGCAGGAACCCCGGCACCATCGCCCTCCACGTGGGGATGAGCTTTCGGGAGCGACCGGCCCCGTTCCACAGAGACAGGCTTCTCTCTGTGAACATCGAGGCGGTGCTACGCTGAGACTGACTGTCTCTACCCAGTCACACCAGCCAAGTAGGTTTGTTTGCTGGTATTTCTGCTTGTACTATTTGTATGTCAATTCTTCATAATAGTGTAAATAAAACACGTTATCAAAATAGCTGGAAAATCTGTTTTAACAACTCCATTAGAATTAATACAAACTCGTCTGTCCTTCTGAGTTACAGCAACAACCACATTAAATCGGGGCTGTTAAATATAAGATCGCTGGCACCTAAATCAGTTACTGTAGGTTAAATTATCATTGACAATGCACTCTCTATGAGACATGGGTTAAAACTGATGGATATTTAGCTCTAAATGAGTCCACTCCCCCCAGGTTCTAGCTATTTCATCTACCCATGCAGGACTGGTCAGGGTGGTGGTGTAGTCGTCAGTTATAGGAATAAATCAAAATACAGAGTTTGAAGCTAAGTCATTTGAACTGTTTAACCTTATAGTCGCAGGCCCATCTACTGCCACCAAAACCCAACATTCATTCCTGCTGATAACTATGTACCGTCCTCCAGGACCATATGCAAAATTCACTAAGAAATTCAGTATATTTTTTAGCTGCAGTAGCTCTCAACTCTGACAGAGTTATCATTGTTGGTGACTTTAATATCTATTTTGAAAAGAAACAGGGCCCACTGAGAATagcatttaaatcaattttggATGCATTAGCCTTCAATGAGAATGTAATGGGCCCAC
>XR_002649486.1
accCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGGGCTGCTGAGGGCTGGGGACCTGAGATAAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGCAGGATTTGGTATCCACAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGA
>XR_002649487.1
accCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGGGCTGCTGAGGGCTGGGGACCTGAGATAAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGGATTTGGTATCCACAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGA
>XR_002649489.1
accCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGGGCTGCTGAGGGCTGGGGACCTGAGATAAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGctggAGAGAACTACTGCAGGATTTCTCCAGACtcactgtaattacacatggTCACCATGACACACTAAATAGGACAGGGGTGTTTTTCCTGAAAGtgatcaatcttagcgaataacaaacaaactaacgCATGACGTGAgaaaagaacgagccagttcttcAAGTGTTTCCCATAGAGCTTTGCAAAAAGTTCAAAGagcgtctttgttgactcctccccttTGCAATTCCTGTAAATCCTGTATTTCCTTGGGAATTccatataagtgtgtgtatggtgcAGTAACAACTGGGTTACAGAATGCACAGACTTGGAGTCTGCACACTTGCTAAGACCGTGACCATCACCAGTTGTCTGCAGGAAACCACCTGTAGCATAAAATCAGTGGGCAGTTAGGTGGTACATGGTGGAACTCTGTGGAACTGAGTTGACCTAGAggcacacatatatacagtgaggaaaatgAACACCCTGCGACTTTGCAAGTTCTCTCACTTATAAATCATTGAGGGGTCTGAAATTTTCATCTTTGGTGCATGTCCACCGTGAGAGACATAATAAAAATCCGGAAAtcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44385 False 836 TUCP 0.39 6 73796463 73868538
TU44391 True 2423 lncRNA 0.43 3 73864127 73868538
XR_002649486.1 False 566 lncRNA 0.52 5 73865063 73868536
XR_002649487.1 False 563 lncRNA 0.52 5 73865063 73868536
XR_002649489.1 False 1048 lncRNA 0.47 5 73865206 73868536

Neighbor

gene id symbol gene type direction distance location
ppil6 ppil6 coding downstream 40947 73749986 ~ 73755516 (-)
enah enah coding downstream 48553 73647169 ~ 73747910 (-)
LOC103032852 lbr coding downstream 157039 73630251 ~ 73639424 (-)
LOC103031805 LOC103031805,LOC105892805 coding downstream 187255 73604327 ~ 73609208 (-)
spats1 spats1 coding downstream 360249 73429168 ~ 73436214 (-)
LOC103035214 NA coding upstream 62859 73931397 ~ 73939674 (-)
c3h1orf112 cunh1orf112 coding upstream 87273 73955811 ~ 73970935 (-)
LOC103037051 si:dkey-51e6.1,LOC103037051,LOC108442414,LOC107555634,LOC107726439,LOC107696171,LOC105907105,LOC108257519 coding upstream 108653 73977191 ~ 73979734 (-)
LOC103031184 LOC108443214 coding upstream 157067 74025605 ~ 74043117 (-)
LOC103038456 LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC106916811,LOC103142585 coding upstream 179401 74047939 ~ 74086439 (-)
G32937 NA non-coding downstream 260359 73533661 ~ 73536104 (-)
LOC111191385 NA non-coding downstream 468309 73326367 ~ 73328154 (-)
G32900 NA non-coding downstream 471096 73319644 ~ 73325367 (-)
G32891 NA non-coding downstream 532910 73262330 ~ 73263553 (-)
G32879 NA non-coding downstream 578312 73217900 ~ 73218151 (-)
G33076 LOC108442415,LOC108257608,LOC106560557,LOC107726497,LOC107696164 non-coding upstream 14355 73882893 ~ 73884914 (-)
G33091 NA non-coding upstream 82374 73950912 ~ 73953542 (-)
G33099 NA non-coding upstream 123204 73991742 ~ 73992572 (-)
ak9 ak9 other downstream 17597 73756908 ~ 73778866 (-)
G32946 NA other downstream 243580 73552415 ~ 73552883 (-)
G32914 NA other downstream 407851 73387862 ~ 73388612 (-)
LOC103029909 LOC108412949 other downstream 762677 72921906 ~ 73033786 (-)
LOC103026087 NA other downstream 877166 72869708 ~ 72919297 (-)

Expression


Co-expression Network