alg2 (alg2,LOC107595974,LOC107706186)


Basic Information

Item Value
gene id alg2
gene name alg2,LOC107595974,LOC107706186
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6544275 ~ 6552001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229458.3
TTTCGgcgggtagcacaactcgacagaacaccgggcTGCATTTCCACCTCTCAGCTTGAGACGCAGCCGGCAGGATGGTCCGGGTGGTGTTCCTGCACCCTGATCTGGGTATCGGGGGTGCGGAGCGGCTGGTGGTGGATGCTGCTGTAGCGTTGATCTCTCGCGGCTGCAGTGTTCAGATCTGGACGGCACACTATGATCCACAACACTGCTTCTCAGAGACGCTCTCGCCGGACCTGCCTGTGGTGTGTGCCGGCGACTGGTTACCCACCAGTGTGTTTGGGTACTTCCATGCTATCTGTGCTTACCTGCGCATGATTTATGTAGCGTTTTATCTGGTGTTTCTGAGCGGAGAGGAGTTTGATGTTGTCTTCTGTGACCAGgtgtcaGCATGCATTCCTGTGCTGCGTCTGGCTCGCCACAAGAAGAAGGTCCTGTTCTACTGTCACTTTCCCGACCAGTTACTGACTCAGCGTCGCTCGCTGCTGAAGCGCCTCTACCGCGCTCCCATCGACCGCCTGGAGGAGCTGACCACTGGCATGGCTGACCGCATCGTGGTCAACAGCAAATTCACGGCTGGTGTTTTTAAAGACACTTTCCCTAATCTGCCCGGGATCCACACTGATGTCCTGTACCCCTCTCTGAACTTTGCTTCTTTTGATGTAGAAGTGGAGGAAGATCTTTCTGGTCTTCTTCCTGAGGGCCGGCGGGTCCTTTTCCTGTCGATTAACAGATATGAGCGAAAGAAGAACCTGCCGCTGGCTTTGCAGGCGTTAGGCGCTTTGAGGGACCAGGTTTCCTCAAAACAGTGGGAGCAGGTACATCTGGTGATGGCTGGTGGATATGATGAGCGTGTGGTTGAGAATGTTCAGCACTATGAAGAGCTTCGCTCTCTGGCGGCCTCTTTGGGCGTGGAAGAGCACGTGACATTCCTGCGCTCCTTCTCAGACCGTCAGAAAGTGGCTCTTCTTCACGGTAGCTGCTGTGTGCTCTACACTCCCAGCAACGAACACTTCGGCATCGTGCCGGTGGAGGCCATGTACACTCGCTGTCCTGTTATTGCCGTTCGCTCTGGTGGTCCGCTAGAGTCTGTGGCACATGGGGAAACTGGCTTCTTGTGCGATCCCACTCCTGAAAGCTTCTCAGAGGCGATGGGTCACTTTTTGACGGAGCCGGGACTCAAGCAGCGCCTGGGCCAGGCCGGACGTGACAGAGTCATAAAGCGCTTCTCTCTGGAGGCCTTCACTGATCAGCTCTACAGACACATCCTCAGCCTCACCGATTGATGGTATGACATCACCgacatcaccaccaccaccgaaTGGCTGTGATCcggcagcagaagcagcagcattcCTCTGTGCAGGTTGCCTTGGAGGGGTCAATGAAAGAATGCGCTCGTTAATTAGAGAAAAGAGCAGTGAACGAATGGGCAGTTTTAACCTGTCTCGGACTCCGGCCAAAGGGACAATGCAGACCCCGGCTTGGATAGGGCCAGAATGTGGAGCAGCCGTCTGACTGAGAGGTTAATGAATTACTGTTTGCTGGCTACATTGATCGCGTGTGTCATCTCAGGGCcctgaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttttgcCTGCGGACCATTAGAGAGTTTCTGGGGCAGGAATCGATGGGGAGTATTTCTGTGCCCCGCTCCGTCTTAAAGCATCTCAGCCTTTGTTCAGTAATAACAATAGCGGCTGTTATTTCAGCCTGAAACTAGTGGAGCTCATAAGTTAGTTAACTGTGAGGAAAGTTCTCTCAGAGACAAAGGGCCACGCTTCTGTATTGGTTTTTGGGATTGTTACTGACTCTCTGTGTGACTCTTTCTCATAGATGCTATTGATATGAAGCTGAGGTCATcattaaaaagaaatgatgCACA

Function

symbol description
alg2 Predicted to enable alpha-1,3-mannosyltransferase activity and glycolipid mannosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein glycosylation in endoplasmic reticulum. Predicted to act upstream of or within protein glycosylation. Located in nucleus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ii and congenital myasthenic syndrome 14. Orthologous to human ALG2 (ALG2 alpha-1,3/1,6-mannosyltransferase).

NR:

description
alpha-1,3/1,6-mannosyltransferase ALG2

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0097502 mannosylation biological_process
GO:0005634 nucleus cellular_component
GO:0033164 glycolipid 6-alpha-mannosyltransferase activity molecular_function
GO:0004378 GDP-Man molecular_function

KEGG:

id description
K03843 ALG2; alpha-1,3/alpha-1,6-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229458.3 True 1924 mRNA 0.53 3 6544275 6552001

Neighbor

gene id symbol gene type direction distance location
erp44 erp44,LOC107593692,LOC107723539,LOC107706132 coding upstream 220380 6293072 ~ 6323895 (+)
tex10 tex10,LOC107706105,LOC107689903 coding upstream 314816 6185481 ~ 6229459 (+)
LOC103023602 LOC107579097 coding upstream 464224 6049397 ~ 6080051 (+)
tbrg4 NA coding upstream 511532 6012790 ~ 6032743 (+)
znf804b NA coding upstream 879632 5440694 ~ 5664643 (+)
frrs1l frrs1l,LOC107595962 coding downstream 41466 6593467 ~ 6603875 (+)
tmem245 tmem245,LOC107687814,LOC107706205,LOC107723436,LOC107595951 coding downstream 54984 6606985 ~ 6641935 (+)
trnat-ugu NA coding downstream 98704 6650705 ~ 6650777 (+)
trnat-ugu_1 NA coding downstream 99979 6651980 ~ 6652052 (+)
trnat-ugu_2 NA coding downstream 101583 6653584 ~ 6653656 (+)
G16824 NA non-coding upstream 5295 6536879 ~ 6538980 (+)
LOC111194764 NA non-coding upstream 105393 6415862 ~ 6438882 (+)
G16799 NA non-coding upstream 183807 6357564 ~ 6360468 (+)
G16779 NA non-coding upstream 311179 6231265 ~ 6233096 (+)
G16777 NA non-coding upstream 327658 6214586 ~ 6216617 (+)
G16828 NA non-coding downstream 22536 6574537 ~ 6574776 (+)
G16829 NA non-coding downstream 22945 6574946 ~ 6575225 (+)
G16831 NA non-coding downstream 24990 6576991 ~ 6577305 (+)
G16815 NA non-coding downstream 53266 6605267 ~ 6643077 (+)
G16811 NA non-coding downstream 91183 6643184 ~ 6645997 (+)
G16820 NA other upstream 11407 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 366391 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2026966 4515997 ~ 4517309 (+)
nrgn NA other upstream 4373068 2150630 ~ 2171207 (+)
G15839 NA other upstream 4862253 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 870570 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1616838 8168839 ~ 8184837 (+)
G17414 NA other downstream 2123618 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 2339243 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 2347939 8899940 ~ 8904004 (+)

Expression


Co-expression Network