LOC103022161


Basic Information

Item Value
gene id LOC103022161
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45495681 ~ 45501646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229697.2
AACGGGCTCTGTCCGGAGCTGGAGTTGGGACATGACGCAGGTCTGGGGGGTGCAGCAGCCCACGACCACTCCAGTCCTCCTCTGCGCTCCGAGCAGACGCATCGTGCGCTCAGAGGTGGAGGAACGAGGCGCTCGCTCCGCGGAGGGAGCAGCAGCTTTCTGAGAGAACagcctctctcttttccccGCAGCGCTGAGAGATCTGTGGAGATGGTCGTGATGAAGTTGCTGTGTGTGCTGGCTGTgactctgtctctgtgtgcagatgcCAAGTCTTTACCGATCGAACAAGACGGCACACGGGATAACCTGCTCACCCACTGTTTGGTTCAGATCCTTTCTAAGGCACTGTCCAAACCAGATGGAACGCCCCTGCAGCCCGAATGTAAAGAAATTCTCAAGGCAGGTTCCACTCACTCTTCTCCTGTGAACAAGAACCAGGAAGATGTTCTTCCCCCAAAGCAAGAGGAGGTGAGGCATGAAGGGGGATCCATAGAAAAAGCACAGGAGGCCATTGCTAAACTTCTCaaagcagaagaggaaaaacaTGAGGATGAGTATGAAGAACGCAGCCAGGAGGAATTTCCAAATTACTACAAGAGACACCACCTTTTAACAAGCAAGGAAAAGCGCGAAGACACAGAAGACGAAAGGAGCCAAGAAGAATTCCCTCAAAAAAGGCATCATTTGTTCTCCACTAAAGAGAAGCGCGAGGATCCAGATGAGGAGCGAAGCCAAGAAGAATTTCCAACCTACGAGCAGAAAAGGCACCACCTCCAAACAAGCAGGGAAAAGCGTGATGAACCCGACGACTATGACCGTAGCCAAGAAGAGTTCCCAAGTTATGTTCACAAGTACCACAAGAGAGATGGAGATTCACCCGATGAAGAGTTTGCTGAATCAGCAGAGGAAGAGGATAGAGATAAACGACACTGGAGACCAGGCCATAAACATCAAAGGAAATATCACAAACGGGATGATGAAGATTTTGCTGAACTGAGCTCTCAAGAGAAGAGGCCTGAAGAATCAGCTGAGGAAGACGAAGAAGAGGAGGATAGAGCTAAAAGACATTGGAGACCAGGTCATAAACATCAGAGGAAATATCACAAACGAGATGTAGATTCAGGTGAAGAACTTGGCTCTCAAGAGAAAGGACCTGAAGAGTATgtagaagaagaggaagaggacagAGACAAACGACATTGGAGACCAGGTCATAAACATCAGAGGAAATATCATAAACGGGATGGGGACTCATCTGATGAAGATCTTGGTGAATCattggaggaagaggaagaggacagGGACAAACGACACTGGAGACCAGGACATAAACATCAGAGGAAATATCATAAACGAGATGTGGAGTCAGATAAAGAACTTGGCTCTCAAGAGAAAGGCCCTGAAGAATATgtagaagaagaggaagaagacaGAGACAAACGACATTGGAGGCCAGGTCATAAACATCAAAGGAAATATCATAAACGGGATGAGGACTCAACTGAAGAAGATCTTGGTGAATCagtggaggaagaggaagaggatagGGAAAAACGACACTGGAGACCAGGACACAAACATCAAAGAAAATATCACAAACGAGATGTGGAGTCAGATGAAGAACCTAGCTCTCAAGAGAAGGGACCTGAAGAATATgtagaagaagaggaagaggacagAGACAAACGACGCTGGAGACCAGGTCATAAACATCAGAGGAAATATCACAAACGGGATGGGGACTCATCGGATGAAGATCTTGCTGAATCagtggaggaagaggaagaggatagGGACAAACGACACTGGAGACCAGGCAACAAACATCAGAGGAGGCACAAGCgaggtgaagaagaagaatcagAAGATATGGAAAGTGAGGAGAGAGATAAGAAGGCTTGGTGGCCCAGCCAATGGTTCCAACATCAGAGATACCGCAAACATGCTGGAGAATCATCTGAAGATGACTCTGAAGATCAGCCACCTGAGAAAACATATGAAGAGCACAAGAAGCCCCATTCAcctgaggaagaagaggaggagctaATTGCCAGAGAGATTAAGGAGAACGGGCACCACAGCCCTTCAGAAGAAGAGAAGCAAGAGAAGGAGGCAGCACTGAGATACCTGACTAAGAAAAAGAACGAGTTGGAGGAGCGTCTGCTGAAGGAGGGCGAGGTTTACGAGAAGCGCAATCCCTGGATTTATCGAGGATACTACCATCCAGCCTGGTATAAGAGGAATTCTGAGCTTGCCAACACCATTCGCTACAAGCGAGGTTTACTGCCCCAAAACGATTCATCTGAGGGGGAACTGCACGAGAGGGCTCTTAATGCAGATGAGTTAAAAGAACTGGAGAAACTGGCCTCAATGGaccaacaaataaaacatacagattAGCAAACTTCGGAAGCAGAAAGGAAACAGCCACCCAGACGAGACGAAACGGCTAACATTCCCCCGTTATGATCGTCCAGAGGCTTTGTGCGTTGCTGCTTTGGGATGCTTTTTGGATTATTTCCTATATTTGAACTTGATgttaaaaatgccaaaaaaaaagaatgctcTGCTTATAGCATTGGTCCACAGTAATGTTTTATCTTATGTGAGATATTATAGACAGTGAAAGCCTTATATTACCTAACTGCAATgttgaatttaaaataaattagttcAAACTGCCTGAAATGGGGaacaaaataggaaaaaaaaactacaaaagcacaaaactatGCCTGTTTACTATTCTGCATCTAATATTATAATTGTGAAATTTGATGTTAAACCTAATGCATGAAATCTACTGATTAAAGACATTTGGTGTTGTTTTCCATTCTGTATAACTTAttattctaaatatatttatagagcCTGCTTTTGTTGTGTGCATCTAATAAAACGTGCTACAATGGGACCAAAGCACTAATAGTCATGTCTCTTAATTTTATGCTCCTTGCttaacaataaagaaaacaaacaaaa

Function

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process

KEGG:

id description
ko04911 Insulin secretion
ko04723 Retrograde endocannabinoid signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229697.2 True 2985 mRNA 0.45 5 45495681 45501646

Neighbor

gene id symbol gene type direction distance location
LOC103023922 NA coding upstream 54425 45433919 ~ 45441256 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding upstream 535445 44872464 ~ 44960236 (+)
wdcp wdcp,LOC107600078 coding upstream 686832 44803559 ~ 44808849 (+)
LOC111197225 LOC108410507 coding upstream 768476 44710373 ~ 44727205 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 802509 44673130 ~ 44693172 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 58900 45560546 ~ 45570484 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 113916 45615562 ~ 45785454 (+)
plcb4 plcb4,LOC108258041 coding downstream 301108 45802754 ~ 45926101 (+)
lamp5 lamp5,zgc:165600 coding downstream 432828 45934474 ~ 45945832 (+)
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding downstream 567927 46069573 ~ 46076984 (+)
G26322 NA non-coding upstream 382713 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 629997 44865143 ~ 44865684 (+)
G26280 NA non-coding upstream 641171 44853881 ~ 44854510 (+)
G26235 NA non-coding upstream 695035 44799984 ~ 44800646 (+)
G26226 NA non-coding upstream 725679 44769262 ~ 44770002 (+)
G26402 fermt1 non-coding downstream 22842 45524488 ~ 45528585 (+)
G26476 NA non-coding downstream 565242 46066888 ~ 46067187 (+)
G26477 NA non-coding downstream 578659 46080305 ~ 46083403 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 854239 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 862238 46363884 ~ 46409990 (+)
LOC103033920 LOC108416105 other upstream 2001365 43490323 ~ 43494316 (+)
G25880 NA other upstream 2070775 43424392 ~ 43424906 (+)
G25879 NA other upstream 2073635 43421771 ~ 43422046 (+)
rps29 NA other upstream 2132237 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2233582 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1026722 46528368 ~ 46549553 (+)
G26915 NA other downstream 2776621 48278267 ~ 48315894 (+)
G26995 NA other downstream 3054151 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3077157 48578803 ~ 48618075 (+)
G27075 NA other downstream 3239568 48741214 ~ 48742439 (+)

Expression


Co-expression Network