trmt6 (trmt6,LOC107593280)


Basic Information

Item Value
gene id trmt6
gene name trmt6,LOC107593280
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45501651 ~ 45512516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229699.3
GGCTCTGGTAAACGCCAGTGAACACGTGGGTCCGggttttctctctcacactcagccTGCGCTCCCCCGGTGCACCGCGCTGCTTTAGCCCTCGCCGGTACTGTTCTGCTGTTCGTACCGGTTACTGGAGGAGATTaagagcctctctctctctcagacaggTGACCGGGAGAGTGATCTGTGGAAATGGCGGATCCGCTGGGGGTGGAGAGTGATGAGGAGGAGTGCAGGATCTGTGAGGGGGAGTATGTAGTCCTGAAGAGAGGAGAGGTCTACAAATCAGTCCAGGTGGAGAAGAGAAAgaAAGTGATTTTTGAGAAGCAGTGGATCTTCATGGACAATGCTGTTGGGCAGCTGTATGGCTCCACTTTTGAAGTAGACAGTGGTGGAATACTGAATCTGCGGAAACCAAAGCAAGATGAAGATTCCACAGACAACAAAGAGGCAGGGTTGGACAACAGACACATTGTTGATGatggaaaatcacagaaactgacCAGAGATGATATTGAGTCACTGAAAGAACAAGGGTTGAAAGGACagGAAATCATTCAGCAGCTTATAGACAACAGTACAACGTTCAAGGATAAAACAGAATTTGCTCAAGAGAAATACatcaagaagaaaaagaagaaGTATGAAAGCAATGTAACAGTGCTGAAGCCTTCCTGCCGTATTTTAGCTATGATGTATCATGGAAGAGAACCTGGAAAAATATGTCACCTGCGATATGACACCCTAGCTCATATGCTGACTATGGGGAACATCCATGCGGGCAGTAAGATTATTGTGTTTGAAACATGTGCCGGCCTTGTTCTTGGCTCCGTTATGGAAAGAATGGGAGGTCATGGCTCAGTGGTCCAGATGTACCCAGGTGGTGGGCCAGTCAGAGCAGGCATGGAGAGCTTTGGCTTCCCTTCACATTTCCACGAGACGCTACATGAATTTCCCTTATGTAAGGTGAACGCCTTACTTTCGGGAACGTTGAACCTGGATGAGAAAGACATGGACTCTCAGAGCAATGACAGCGCAGATAAAGAAAAGTCTGGCTCCTCTCAGGTCTCCTCAGGTGGAGGTGAGGAGGGCAGCTCAGAGCCACAGAGTATGGAAGTGAGCTTAGACCCAGCAGAGGCCAAGAAAAGGGAGGAGAGGGAGAAGCTACGTGAGCAAAAGGCACAGGAGAAGAAAGCGAAGTtggaggagaagaggaagagacTGGCTGCAGCAGCTGCCCTGCTGGAGGGTCGAAATGCAGATGGGTTGGTGATCGCCAGCCGCTTCTCCCCCTGCTCTGCACTGCTGTGCCTATTGAAGTTTGTGGCGCCGTCAAGACCGTTCGTAGTGTACTGCCAGTATAGAGAGccatTAATTGAATGCTATACAAAACTCAGGGAACAAGGTGGAGCAATCAGCCTCAGACTGACCGATTCCTGGCTTAGGCATTATCAGGTGTTACCCAACAGAACCCACCCCGTGCTGCTGATGAGTGGAGGAGGAGGTTATCTGCTCTCTGGAATCACAGTCGCTGCTGCTGCATCAGGAGCTCAGCAGAAATCAAGCGAGCCAGCTGCAAAGAGGATCAAACTCGATGAGATTACGAGCACAGCTGACAGTTCTGCCTAGCCTGTTTGTTCTACCTAACTTATTTTCGTTGGAATAAACCAAATTAGCCTCTCCTTGGGGAAATAATGTATAACTCCTCTGATAAAGTTGCTAGGCTTTATTGTACGAAGTTTAACCTTGTTTCCCAGGAGCCAGCCTTTCATCATTCAGCACAGGGCTATTCACAATGCTTTTACTggtgttctttttattttttattttattttatataagcaCAGAGTGCGAAGAAAAATGCAACTGCAATTTTGTGATCTTATAGTGTCCCAGACGAATTGCATTACCTTGAAAATTAAGAGTTAATAAAATATGACACACATGGGGAAa

Function

symbol description
trmt6 Predicted to act upstream of or within tRNA methylation. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Orthologous to human TRMT6 (tRNA methyltransferase 6 non-catalytic subunit).

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

GO:

id name namespace
GO:0006446 regulation of translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03256 TRM6, GCD10; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229699.3 True 1947 mRNA 0.47 11 45501651 45512516

Neighbor

gene id symbol gene type direction distance location
gpcpd1 gpcpd1,LOC107697181 coding downstream 36039 45451286 ~ 45465612 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding downstream 53485 45441438 ~ 45448166 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 135805 45358910 ~ 45365846 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 186396 44983244 ~ 45315255 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 650558 44808826 ~ 44851093 (-)
fermt1 fermt1,LOC106571740 coding upstream 2679 45515195 ~ 45531393 (-)
pak5 pak5 coding upstream 435512 45948028 ~ 46055938 (-)
LOC111194348 NA coding upstream 537318 46049834 ~ 46052723 (-)
LOC103025404 NA coding upstream 565692 46078208 ~ 46106169 (-)
LOC103025714 NA coding upstream 596056 46108572 ~ 46129242 (-)
G26386 NA non-coding downstream 91615 45408433 ~ 45410036 (-)
G26347 NA non-coding downstream 261433 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 340721 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 387690 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 636585 44862184 ~ 44865066 (-)
LOC111191909 NA non-coding upstream 85071 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 220800 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 330658 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 335101 45847617 ~ 45849592 (-)
G26612 NA non-coding upstream 554132 46066648 ~ 46067188 (-)
G26388 NA other downstream 64066 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 615850 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 630961 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 702146 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1601891 43890629 ~ 43899760 (-)
G26588 NA other upstream 422637 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 779571 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 914901 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 1006355 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 1021179 46533695 ~ 46535835 (-)

Expression


Co-expression Network