fermt1 (fermt1,LOC106571740)


Basic Information

Item Value
gene id fermt1
gene name fermt1,LOC106571740
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45515195 ~ 45531393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229700.3
GACTGGGCGTGTTCTTTTCTTCATACCTTCATCAGGAGAACTGTGCTGAGATATCAGCGCTGCtgctgcactggaaaaaaacagcttCAGCCTGAATAGTGTGAGCTTCCCCCCGGTGAAGCCATGGTCACCGCTGCTGAGCGCCAAAACTCATGGGAGCTGTCGATCCAAGTGGATCAGCGGCAAGGAGATGAGAGCATGAAGTTTAAAATTCTGGTTAAGGGAGATCTTCACATTGGAGGACTCATGCTCAAACTCGTGGAGAAGATCAAGACCCCTCAGAACTGGTCAGATCATGCCCTGTGGTGGGAAAAGAAGAACTGCTGGCTGTTGAAAAACCACTGGACACTGGATAAGTATGGAGTGCAAGCAGATGCTGACCTACGCTTTACTCCCCAGCATAAGCCACTGTTGCTGCAGCTGCCCAACATGAAGACCATCAAACTGACCATCAGCTTCTCATCAGTGGTCTTCAAGGCTGTGGAAGAAATTTGCAAAGCACTCAACATAAGAAGATCAGAGGAGTTATCCCTCCTGAAAGCACCAGATgatccaaaaaagaaaaagaaaaaagacaagaatAAGGACCAGGAGGAAGATGAAATAATAGACATGGACGTTATCAGTGGAACAGCTGGCAGCAGTCTCTACAGTAAAACCATGACGGCGACCTATGACCCTGAGAACGGAACACCCGCATCAGCCACCAGCCTGTGGTTCGGGGAGAACTCTCTGACTTCCAGCCAGCCCAACGTGCCCCCAGAGGAGCTGGCCAAGATGTACCAACCTCTTAGTATGGAAGATAAATCTGTAATCAATGCTGGGTGGCTGGACTCATCGAGTTCTCTAATGGAGCAAGGCATCCAGGAGAATGACAAGCTTCTTCTGCGCTTCAAGTACCATTGTTTCTTTGATCTCAATCCAAAGTATGATGCAGTAAGGATTACACAACTGTATGAACAGGCACGGTGGGCTATTCTCCTGGAAGAGATTGAATGCACTGAAGAAGAGATGCTGATGTTTGCTTCCCTGCAGTATCACATATGCAAGCTGACCATGTCTACCAAGCCTGTGGACTATTCAGACGAACCCGACATCGATGAGGTGGAGGCAGCCCTCTCACATTTGGAAACAACACTTGAAGGACGAAACACAGACAAAATTCTGGAAGATATCACAGATATTCCAAAATTGGAAGACACTCTTAAACTGTACAGGCCCAAGCGACTACTGCGAACGTTCAAAGACTACTGGTTTGTGTTCAAAGACACCAGCATTTCCTATTACAAAAACAAAGAGTCTGCCAGTGGAGAGCCCATTGAACAACTCCATCTGCGAGGCTGTGAAGTTGTTCCAGATGTCAATGTAACAGAAAAGAAGTTTGGGATCAAACTCTTACTACCTGTTGCAGATGGAATGAACGAGGTGTATATTCGTTGTGATAATgaaacgcAGTATGCCAAGTGGAAAGCTGCCTGCATCTTGGCCTCTAAAGGCAAGACGATGGCCTACAGCTCCTACGGCTCTGAGGTCAGGAACATCCAGTCTTTCCTACAGATGAAGAGTTTGGCGCCCCCACCCGGCCAGGCTGCATCTGACGTGGAGTCCATGGAGATGAATCCTGAATGTTTTGTCTCTCCACGATATGGCAAAAAATACAAGaacaaacaattatctaCACGGATCTTGGATGCCCATCATAATATTTCCCAGCTCTCTCTCATGGAGGCTAAAATGCGCTTCATCCAGGCATGGCAGTCTTTGCCAGAGTTCGGTATCAAATACTACATAGTTAGATTCAGAGGGTGCAAGAAGGATGAAATACTAGGCATCTCCTACAACAGATTAATCCGTATTGACACGTCCACACGCCTGCCAGTGACTACGTGGAGATTTTCCAACATGAAACAATGGAATGTCAACTGGGAGATTAGACAGGTGTCCATTGAATTTGACCAAAACGTGTGGGTAGCATTCTCCTGTCAGAGCTGTGACTGTAGAGTGGTTCATGAATACATTGGAGGCTACATTTTCCTCTCAACCCGCTCCAAGGACCAAAATGAAACACTAGATGAAGAACTCTTCCGTAAACTTACAGGAGGACAAGAATAACTGTTAACATCACTGAAAAACTTGTGAATCTTCCATGTGTCAAGTCGAGATTGGCCTTCAGATTTCAATTGACCAAGTTGTAATGTAGCCTTTTTAATATGAGTttcatgcttttgtttttttttttgtttacatttaaacaaaaaccTCATTAAAAAGCTCAGATTTGTGACACTACATGGGTATGCTAGCCAAGCTTACTGGTATTTGCTGAATTTCATCTTATGAGCTTAATTGTAAGTTTAATTCAGAGCTTCCAAAGAGGAGAGCCACACCTGATCTGATACTACTGACATACTTAGCTGCTCCAGCTTGTGGATGTAACAtgagagacagaagctcatctgttgctgcacagtttgtgttggtcatcctctagtccttcatcagttcTCACAGGAAGCTGCCCACAGAGCACCGTTGGCTCATTGTTTTATCTTGATAGACTGTtcttagtccagcagtgacactgaggtgtttaaaaactccagcagcactgctgtgtctgatccactacTTCCCTAAAAACACACGCTAATACACTAcactgtcactgcagtgctgagaatggtCTACCATCCAATAGCTGCTGTGTGGTGGTTGTGTGGGTTTATTGAAGAACAAGGGGAAGGGAAGGAGGATAATTAAGTATGAACAGAAACATAGGGCCCcattctgtaattatagaactataaagtgATCCTGTGTGCACAGTGGAGCTGAAAGATGGACATTgcatgtagaaacaaggaggtggtgaTATTCTTATGTGTATACACTATTTCATTTCTGCTGAAGAATTTAAAAGGCAGCCAGCCACAACAAAGTATTGAAAACATAGTGaatgttatttgtttttgtatttcctATTAAACATGTCAATCAGAACA
>XM_015605195.2
AAGGAGATGAGAGCATGAAGTTTAAAATTCTGGTTAAGGGAGATCTTCACATTGGAGGACTCATGCTCAAACTCGTGGAGAAGATCACATAAGCCACTGTTGCTGCAGCTGCCCAACATGAAGACCATCAAACTGACCATCAGCTTCTCATCAGTGGTCTTCAAGGCTGTGGAAGAAATTTGCAAAGCACTCAACATAAGAAGATCAGAGGAGTTATCCCTCCTGAAAGCACCAGATgatccaaaaaagaaaaagaaaaaagacaagaatAAGGACCAGGAGGAAGATGAAATAATAGACATGGACGTTATCAGTGGAACAGCTGGCAGCAGTCTCTACAGTAAAACCATGACGGCGACCTATGACCCTGAGAACGGAACACCCGCATCAGCCACCAGCCTGTGGTTCGGGGAGAACTCTCTGACTTCCAGCCAGCCCAACGTGCCCCCAGAGGAGCTGGCCAAGATGTACCAACCTCTTAGTATGGAAGATAAATCTGTAATCAATGCTGGGTGGCTGGACTCATCGAGTTCTCTAATGGAGCAAGGCATCCAGGAGAATGACAAGCTTCTTCTGCGCTTCAAGTACCATTGTTTCTTTGATCTCAATCCAAAGTATGATGCAGTAAGGATTACACAACTGTATGAACAGGCACGGTGGGCTATTCTCCTGGAAGAGATTGAATGCACTGAAGAAGAGATGCTGATGTTTGCTTCCCTGCAGTATCACATATGCAAGCTGACCATGTCTACCAAGCCTGTGGACTATTCAGACGAACCCGACATCGATGAGGTGGAGGCAGCCCTCTCACATTTGGAAACAACACTTGAAGGACGAAACACAGACAAAATTCTGGAAGATATCACAGATATTCCAAAATTGGAAGACACTCTTAAACTGTACAGGCCCAAGCGACTACTGCGAACGTTCAAAGACTACTGGTTTGTGTTCAAAGACACCAGCATTTCCTATTACAAAAACAAAGAGTCTGCCAGTGGAGAGCCCATTGAACAACTCCATCTGCGAGGCTGTGAAGTTGTTCCAGATGTCAATGTAACAGAAAAGAAGTTTGGGATCAAACTCTTACTACCTGTTGCAGATGGAATGAACGAGGTGTATATTCGTTGTGATAATgaaacgcAGTATGCCAAGTGGAAAGCTGCCTGCATCTTGGCCTCTAAAGGCAAGACGATGGCCTACAGCTCCTACGGCTCTGAGGTCAGGAACATCCAGTCTTTCCTACAGATGAAGAGTTTGGCGCCCCCACCCGGCCAGGCTGCATCTGACGTGGAGTCCATGGAGATGAATCCTGAATGTTTTGTCTCTCCACGATATGGCAAAAAATACAAGaacaaacaattatctaCACGGATCTTGGATGCCCATCATAATATTTCCCAGCTCTCTCTCATGGAGGCTAAAATGCGCTTCATCCAGGCATGGCAGTCTTTGCCAGAGTTCGGTATCAAATACTACATAGTTAGATTCAGAGGGTGCAAGAAGGATGAAATACTAGGCATCTCCTACAACAGATTAATCCGTATTGACACGTCCACACGCCTGCCAGTGACTACGTGGAGATTTTCCAACATGAAACAATGGAATGTCAACTGGGAGATTAGACAGGTGTCCATTGAATTTGACCAAAACGTGTGGGTAGCATTCTCCTGTCAGAGCTGTGACTGTAGAGTGGTTCATGAATACATTGGAGGCTACATTTTCCTCTCAACCCGCTCCAAGGACCAAAATGAAACACTAGATGAAGAACTCTTCCGTAAACTTACAGGAGGACAAGAATAACTGTTAACATCACTGAAAAACTTGTGAATCTTCCATGTGTCAAGTCGAGATTGGCCTTCAGATTTCAATTGACCAAGTTGTAATGTAGCCTTTTTAATATGAGTttcatgcttttgtttttttttttgtttacatttaaacaaaaaccTCATTAAAAAGCTCAGATTTGTGACACTACATGGGTATGCTAGCCAAGCTTACTGGTATTTGCTGAATTTCATCTTATGAGCTTAATTGTAAGTTTAATTCAGAGCTTCCAAAGAGGAGAGCCACACCTGATCTGATACTACTGACATACTTAGCTGCTCCAGCTTGTGGATGTAACAtgagagacagaagctcatctgttgctgcacagtttgtgttggtcatcctctagtccttcatcagttcTCACAGGAAGCTGCCCACAGAGCACCGTTGGCTCATTGTTTTATCTTGATAGACTGTtcttagtccagcagtgacactgaggtgtttaaaaactccagcagcactgctgtgtctgatccactacTTCCCTAAAAACACACGCTAATACACTAcactgtcactgcagtgctgagaatggtCTACCATCCAATAGCTGCTGTGTGGTGGTTGTGTGGGTTTATTGAAGAACAAGGGGAAGGGAAGGAGGATAATTAAGTATGAACAGAAACATAGGGCCCcattctgtaattatagaactataaagtgATCCTGTGTGCACAGTGGAGCTGAAAGATGGACATTgcatgtagaaacaaggaggtggtgaTATTCTTATGTGTATACACTATTTCATTTCTGCTGAAGAATTTAAAAGGCAGCCAGCCACAACAAAGTATTGAAAACATAGTGaatgttatttgtttttgtatttcctATTAAACATGTCAATCAGAACA

Function

symbol description
fermt1 Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within integrin-mediated signaling pathway. Predicted to be active in focal adhesion. Is expressed in several structures, including intestinal epithelium; median fin fold; non neural ectoderm; pectoral fin bud; and pectoral fin fold. Human ortholog(s) of this gene implicated in Kindler syndrome; telangiectasis; and vesiculobullous skin disease. Orthologous to human FERMT1 (FERM domain containing kindlin 1).

NR:

description
fermitin family homolog 1

GO: NA

KEGG:

id description
K17082 FERMT1, KIND1; kindlin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229700.3 True 3002 mRNA 0.44 15 45515195 45531393
XM_015605195.2 False 2690 mRNA 0.43 14 45515195 45528516

Neighbor

gene id symbol gene type direction distance location
trmt6 trmt6,LOC107593280 coding downstream 2679 45501651 ~ 45512516 (-)
gpcpd1 gpcpd1,LOC107697181 coding downstream 49583 45451286 ~ 45465612 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding downstream 67029 45441438 ~ 45448166 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 149349 45358910 ~ 45365846 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 199940 44983244 ~ 45315255 (-)
pak5 pak5 coding upstream 416635 45948028 ~ 46055938 (-)
LOC111194348 NA coding upstream 518441 46049834 ~ 46052723 (-)
LOC103025404 NA coding upstream 546815 46078208 ~ 46106169 (-)
LOC103025714 NA coding upstream 577179 46108572 ~ 46129242 (-)
LOC103029737 lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320 coding upstream 786571 46317964 ~ 46329110 (-)
G26386 NA non-coding downstream 105159 45408433 ~ 45410036 (-)
G26347 NA non-coding downstream 274977 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 354265 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 401234 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 650129 44862184 ~ 44865066 (-)
LOC111191909 NA non-coding upstream 66194 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 201923 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 311781 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 316224 45847617 ~ 45849592 (-)
G26612 NA non-coding upstream 535255 46066648 ~ 46067188 (-)
G26388 NA other downstream 77610 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 629394 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 644505 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 715690 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1615435 43890629 ~ 43899760 (-)
G26588 NA other upstream 403760 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 760694 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 896024 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 987478 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 1002302 46533695 ~ 46535835 (-)

Expression


Co-expression Network