LOC103023605 (napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620)


Basic Information

Item Value
gene id LOC103023605
gene name napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45441438 ~ 45448166 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229702.2
CAAGTAAACCCGTCGGCAGTAATCCCCAGCTACAGTAGCGACACAGAGCGGGTTATACGGAGCGCTGCGGAACATTAAGTTTATACGCCTGTTCTTCTGATCGCTTACTGAAACAGAATGGACAATTCGGGCAAGGAGAAAGAGGCCATTCAGCTGATGGCTGATGCGGATAAGAAAGTGAAGTCGTCCGGCTCTTTCCTAGGAGGGATGTTTGGTGGGAATCACAAAGTTGAGGAGGCCTGTGAAATGTATGCCAGAGCAGCCAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCAGGAAATGCTTTCTGCCAGGCAGCCAGACTTCACATGCAGCTTCAGAACAAACATGATGCAGCCACCAGTTTTGTTGACGCTGGAAATGCCTTCAAGAAGGCTGATCCACAGGAGGCCATCAACTGCTTAAATGCAGCCATCGATATTTATACAGACATGGGACGATTTACCATTGCAGCCAAACACCATATCACAATTTCAGAGGTGTACGAGTCAGAACTGGTTGATATCGAGAAGgCAATTGCACATTATGAACAGGCTGCAGACTATTACAAAGGGGAGGAGTCAAATAGCTCTGCAAACAAGTGTCTCCTGAAGGTTGCTTCATACAGTGCCCAGCTGGAACAGTATCCAAAGGCCATTGAAATCTACGAACAGgtTGGAACAAACACTATGGACAACCCTCTGCTGAAATACAGTGCCAAAGAATACTTCTTCAAAGCCTCCTTATGTCACTTCATTGTGGATGAGCTCAATGCAAAGCTCGCTGTTGAGAAGTATGAGGAAATGTTCCCAGCATTTTCTGATTCAAGAGAGTGCAAACTTTTAAAGAAACTTCTGGAGGCCCACGAGGAACAGAATGCAGAGGCTTTCACAGAAGCAGTGAAGGAGTTTGATTCTATTTCACGTCTGGACCAGTGGCTAACCACCATGCTCCTGCGCATTAAGAAAACCATCCAGGGTGATGAGGGGGACTTGAAGTGAAATGTAGAGCTGGGGGAAACCATCCAAGGCATGACACCCCCTCCCcgaaacatttcatatcattttTGTGCAATGGCCAAGTCCAGGTTTCCCAGTACGATATGTTAAGATTTATTGCTGCAGCGTTTATAGcgcacatataaacatattacaTTGATTTCGtacattatttttaacattaatattaggCTTTCCAACATTAGACCTGGTTTGGGCTGCTAAATCTCAGGCTCCCTGTTTTTATAATGAATGTTTTTTCTGAATACACAAAGTGGTGTAGTTCAGTGTCGGGATCAGCCAAGGATAAACTAGGGACCTGAGAAGTTGGCTGGTTAAGTAATCACTGGATTGTGGATTGCTAGTGCTGCATGACATGTACAAATGTAATTATGGTGTCAGAAGAccagaaatattttaaagtagattgaaatttgtttgattatttatttattttatttgtgcaaTCTGTACTCATCCTATTTCTGTCAGTACCTCTACAGCTGTGTAGGCCTCATGTCTCCTACGGAAATCTATGGGTTTGTCAGTCTTAATTTAATACTCAGTTATGTTAATGTTCTACAAAAGTGTAACACATGTCAGAGTAATGAAGTATAAACAACGTTTATTTCTTAATCCTGTCACGATGTTCAAATTAGTAAtgtttctttatgttttatttatgtttctactttctctcatttatATTTGACCTCACTCATTGGTTTGCAGGTTGCACACCACTTACATATACAACTGAAGGCAAACACTTGTTGCTCCATGTTTGTTAGCATATTCAAACTATGAACGATTTGTGAAATCCCTGTATAACCTGTGTCGATGTGCTATGTGTTGTGTTGTGAATTCATCTGTCATGCAGCACTTATGCTAGTGCACTCTCCATTTTGGTGGTCCTTAGCAGCGCATGTcacagtgtgtctgtgtattaGTGATGATATTTAGTATCTCACTGTATCTatagtttttaaaaagccatcACTAGAGGCAACCTACTTATTTATCTAGGTTCTTTCTGACTGAGTAATTGATCTACTGCTGAATGTCTGTATGAAAGCACAGAAATAAAGGTCTGAtattaaaagaaa
>XM_022686708.1
aacaTATTTTAACTACTTGAATTGTTTATACCACCTTTAATGAAGCAGCCTGTAGTTGTGTAGGCAGTGCACTacttaaggtggaattgaaCACTGGACATGAACGCCTACCTTTAATGGGTAAACTCGTCATGGGAATCACAAAGTTGAGGAGGCCTGTGAAATGTATGCCAGAGCAGCCAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCAGGAAATGCTTTCTGCCAGGCAGCCAGACTTCACATGCAGCTTCAGAACAAACATGATGCAGCCACCAGTTTTGTTGACGCTGGAAATGCCTTCAAGAAGGCTGATCCACAGGGGACGATTTACCATTGCAGCCAAACACCATATCACAATTTCAGAGGTGTACGAGTCAGAACTGGTTGATATCGAGAAGgCAATTGCACATTATGAACAGGCTGCAGACTATTACAAAGGGGAGGAGTCAAATAGCTCTGCAAACAAGTGTCTCCTGAAGGTTGCTTCATACAGTGCCCAGCTGGAACAGTATCCAAAGGCCATTGAAATCTACGAACAGgtTGGAACAAACACTATGGACAACCCTCTGCTGAAATACAGTGCCAAAGAATACTTCTTCAAAGCCTCCTTATGTCACTTCATTGTGGATGAGCTCAATGCAAAGCTCGCTGTTGAGAAGTATGAGGAAATGTTCCCAGCATTTTCTGATTCAAGAGAGTGCAAACTTTTAAAGAAACTTCTGGAGGCCCACGAGGAACAGAATGCAGAGGCTTTCACAGAAGCAGTGAAGGAGTTTGATTCTATTTCACGTCTGGACCAGTGGCTAACCACCATGCTCCTGCGCATTAAGAAAACCATCCAGGGTGATGAGGGGGACTTGAAGTGAAATGTAGAGCTGGGGGAAACCATCCAAGGCATGACACCCCCTCCCcgaaacatttcatatcattttTGTGCAATGGCCAAGTCCAGGTTTCCCAGTACGATATGTTAAGATTTATTGCTGCAGCGTTTATAGcgcacatataaacatattacaTTGATTTCGtacattatttttaacattaatattaggCTTTCCAACATTAGACCTGGTTTGGGCTGCTAAATCTCAGGCTCCCTGTTTTTATAATGAATGTTTTTTCTGAATACACAAAGTGGTGTAGTTCAGTGTCGGGATCAGCCAAGGATAAACTAGGGACCTGAGAAGTTGGCTGGTTAAGTAATCACTGGATTGTGGATTGCTAGTGCTGCATGACATGTACAAATGTAATTATGGTGTCAGAAGAccagaaatattttaaagtagattgaaatttgtttgattatttatttattttatttgtgcaaTCTGTACTCATCCTATTTCTGTCAGTACCTCTACAGCTGTGTAGGCCTCATGTCTCCTACGGAAATCTATGGGTTTGTCAGTCTTAATTTAATACTCAGTTATGTTAATGTTCTACAAAAGTGTAACACATGTCAGAGTAATGAAGTATAAACAACGTTTATTTCTTAATCCTGTCACGATGTTCAAATTAGTAAtgtttctttatgttttatttatgtttctactttctctcatttatATTTGACCTCACTCATTGGTTTGCAGGTTGCACACCACTTACATATACAACTGAAGGCAAACACTTGTTGCTCCATGTTTGTTAGCATATTCAAACTATGAACGATTTGTGAAATCCCTGTATAACCTGTGTCGATGTGCTATGTGTTGTGTTGTGAATTCATCTGTCATGCAGCACTTATGCTAGTGCACTCTCCATTTTGGTGGTCCTTAGCAGCGCATGTcacagtgtgtctgtgtattaGTGATGATATTTAGTATCTCACTGTATCTatagtttttaaaaagccatcACTAGAGGCAACCTACTTATTTATCTAGGTTCTTTCTGACTGAGTAATTGATCTACTGCTGAATGTCTGTATGAAAGCACAGAAATAAAGGTCTGAtattaaaagaaa

Function

symbol description
napb Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in several processes, including SNARE complex disassembly; glutamatergic synaptic transmission; and regulation of receptor internalization. Located in extracellular exosome. Biomarker of Alzheimer's disease and Down syndrome.

NR:

description
beta-soluble NSF attachment protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229702.2 True 2108 mRNA 0.41 11 45441438 45448166
XM_022686708.1 False 1978 mRNA 0.40 10 45441438 45446516

Neighbor

gene id symbol gene type direction distance location
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 75592 45358910 ~ 45365846 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 126183 44983244 ~ 45315255 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 590345 44808826 ~ 44851093 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 681233 44737167 ~ 44760205 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 866163 44525886 ~ 44575275 (-)
gpcpd1 gpcpd1,LOC107697181 coding upstream 3120 45451286 ~ 45465612 (-)
trmt6 trmt6,LOC107593280 coding upstream 53485 45501651 ~ 45512516 (-)
fermt1 fermt1,LOC106571740 coding upstream 67029 45515195 ~ 45531393 (-)
pak5 pak5 coding upstream 499862 45948028 ~ 46055938 (-)
LOC111194348 NA coding upstream 601668 46049834 ~ 46052723 (-)
G26386 NA non-coding downstream 31402 45408433 ~ 45410036 (-)
G26347 NA non-coding downstream 201220 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 280508 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 327477 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 576372 44862184 ~ 44865066 (-)
LOC111191909 NA non-coding upstream 149421 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 285150 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 395008 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 399451 45847617 ~ 45849592 (-)
G26612 NA non-coding upstream 618482 46066648 ~ 46067188 (-)
G26388 NA other downstream 3853 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 555637 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 570748 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 641933 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1541678 43890629 ~ 43899760 (-)
G26588 NA other upstream 486987 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 843921 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 979251 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 1070705 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 1085529 46533695 ~ 46535835 (-)

Expression


Co-expression Network