trib2 (trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179)


Basic Information

Item Value
gene id trib2
gene name trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45358910 ~ 45365846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229705.3
CGCGCTGGCCGTGTGCGTGGAGCGCAGAGCGAGCCGAGCGAGCAGCAGCAGTCCGCTCCCGCACCGCACCGCGCTGAGCATGAGCGCCGCGCCTCCTCGCCATCAATGGACCTGACTCACAGCCgtgccagcagcagcagcagcagcaggagcccGCGGGACAGGAGGATGTGTTGCTGAAATAAGGATCAGGCCTGAGGGAGAGTCGGCCGtccctccttcttctcctccttctgtTCTCGTTGTTCCAGCATCCAGATCTCCAGAAGTCCGGGGTTTAGCAGGAATAAGACCGGGAGAAAAGTCGTCGAGGACATCCTCTCCCCTCTGCTTtaatcagaaacacagagacagcgcgCTCCGGGGCTGTTCTGCAGTGAGGACGGGTCTCTGCACACTTCTGGAGAGCTGCATGGAAATGATTTGtgggagaagaaggagaaggcCGCTTGTGCTGGAGGAAACCGGAGCCCTCTCTCAGGAAATCTGATCCCTCTCACCGgttagcaggctagctagctcccctctctctttcatacATGGTGATTTCATTGCCTTTTATTTCAAACTGGAACAGGGAaaaatagctagctagattagctaggTTAGATTTGCAGGCATTGGGTTTTCCAGCGTTTTGCACACGCCTGGTTGTTGGTTTATCTGTAGTACAGTTACAGAGGCTTctgttaacctagctaacctagttagctagctgaGCTTCTGTAGTTACaacagcaggagcagcagcatcCACTGAGTCTAACCTAAAGATAGGTTAGCTTActggctagctagttaacctagctccTCAACAAATGACATCAACATTAGCCAGAAAACTGAATGAAAAACGCACTAAGCTAGAGCAAGCTTATTTAACTAACTAATAGTTACATCCAGCTATAGAGAGGCCTTATCGAGGGACTCCTCTGTTTCTGTAACTGGAATACTATATCTgactagttaactagctaacctacacCCTGTGGTCTTTTCTCTGCAAATTCTTGCAGAAGCTTTTGCTAGCAAACCGAACCGTGTTAAACTAGCTAGCTCTAATCAACACTAATCAAATACAGTGCTATTTCAGCCTCAGTTGAAACGTGTCTAGCTAAGCTATTGAACATTTGCTCATTTGCTGATCCACTGTAAGCACTTTCTGCAGACATAGTAGCCTAATCTAAGACtatagctagttaactagcttaACTAGCAGATTTTAAGACCCCCCTAAACAGATATTAAGTAACTATTAGCTTGAGCTGAGCTTTTAAGACCCCCCACCAACACAGATATCgagtagcttttttttttttttttttattgtatatttttctaCTACACTAGCTGGACTATCACCCCCACTCTATCTTAGCTTAGCTCTATCTCCAGCCCAAGTTCAcccccttcctcctcctcctccctcgaCTCAAAACATCGACCCCTCTCCCTTAGGACGACCCTCATCTACCACTCATGAACATACAGAGGTCAAATCCCATTAACATTTCGCGTTATGGGAGATCGAGGCACAAAGCGCACGAGTTCGAGGAATTGTCTTGCATAAGGACAACCGAGTCGAGCCAGAGCTTCAGCCCCAATTTAGGATCCCCCAGCCCCCCGGAGACCCCGGACTCGTCGCACTGCATCTCGTGCATTGGAAATTACCTTTTGTTGGAGCCGCTCGAGGGAGACCACGTTTTCAGGGCCGCCCACTTGCACAGTGGGGAAGAGCTCGTCTGCAAGgtCTTTGATATCAGCCGATATCAAGAGTCCCTTGCTGCCTATTTTGTGCTGGGCGCCCACCAGAACATCAACCAAATAGTGGAGATCCTCCTGGGGGACACGCGTGCGTACGTGTTCTTCGAGCGGAGCCATGGGGACATGCACTCCTTCGTCCGCACGTGCAAAAAACTGCGGGAGGAAGAGGCTGCCAGACTATTCTATCAGATAGTCTCAGCCGTGGCACACTGCCATGACAACGGCCTGGTTCTTAGAGACCTCAAGCTGAGGAAGTTCGTCTTCAAGAACGAGGAAAGGAACCTTGTGAAGTTGGAAAGTTTGGAAGACACATACCTCTTGGAAGGAAGTGATGACTCTCTCTCAGACAAACACGGCTGTCCGGCCTACGTAAGCCCGGAGATCCTCAATGCTAGTGGCAGCTACTCTGGGAAGGCAGCAGACGTGTGGAGCCTGGGCGTCATGCTGTACACAATCCTCGTCGGTCGCTACCCCTTCCACGACGTGGAACCCAGTTCACTCTTCAGCAAGATCCGCCGTGGCCAGTTTAGCATCCCGGAGACATTAACGCCCAAGGCCCGCTGCCTGATCCGCAGCATTCTCCGGCGTGAACCGGGCGAACGTCTAACTTCCCAGGAGATCCTGGAACACCCCTGGTTTCTGGCTGCCACCAGCCAGCCTGGAACAGGCCACAGCAGGGGAGAGCGTGAGGTGGACCAGATGGTGCCAGAGGCCAAcatggaggaggagctggagcagtaCTTCAGCTgagcagcacaaaaaaaaaactttcagacATTTTGCCACGTGTTTTAGACGACAAAAAAGAGAAGTAAACAGAATACACTCATTACAAAGGTGTCTATCGTTATCTCCCATTCCATCGAGGAAATATGGGAAGGTCTGGCTTGATGGTGTGAAAGACCTTCAGCAAGAGCTTCTGGGCAATGCAAATGTTAATGTTCAGTAATGTAGCAAGACTTACAACTATCTCTTAGTTtgagtttttcctttttattttaagtggtgCTCATGAGATGTACGAGTCACATTAagctacaaaacaaacaaacaaacaaacaaaaaacccaCAACGGCACAGGAGTCCTCAGCCAAGGAGAACAAAACCATGAGGCAAACTGCAACCACTCCTGTTCTGAGTTCTGATTCATCAAGAACATGACGTTGTCTTCAGATACTGAACTTTACTCCAAAAGCATTTTGTTTGCTGTATCTATATTtattctttgttattttttagaagtatattacTTATACCATTCTGCTCTTTCGTAGCCTTATAGGCCAATACTATAGAACGTATGTGCTGGCTATCCGTAAAGttacaaaaatatgtttgtaaTTTCTTCTCTTCAGGCTTGACCCCCCTCATTGTGTAATTACGTTAACTTTCATTGTTTCTGTCATTTGTGTACGACTGCACCAAGTCAGCCCTTTGTGTTGCATTAAGCTCTCACTTTTCTCTTAAAAAGTTACTGCTGCTTTTCTTCTGCTCTAACCTGAACTGAACCTTTCTCCTTGAGCCTCCAAACATGATAAGCACTTGACTTGCCTAGGCTAGGTGAATGGTCCGATTCCACGTCTCTAGGCTAGCatctatttaattttaatttctttcttttacagaAATGAAAGTGAGTTTGTTTCTTCTAATTTAAAATAACtgctatattaaaaataaataaatattttcaggGTTTTCTGTTCAGTTACAGTTTCATCAAATATTGTAGGCAATACTTTTGACACAGGACAGTTTGGAAGTTAAGGCATTAAAGACTGTCCCAAGGTTTAGAATGAACTTTAGTGCCAGTATTTGTGCCCCCACACCACCTATGCTGatagtgtttttgtttgtttatttgttaaaatttaGGTTTGGACTCCACAACAGTAAAATGACGTTACTACGACTACACTGTCTCCAGTACCTCATGTTAATTTTCTACTGCCTGCGTGGGTTCTGTGAAATGATCATATTCTGAATGGGTACATGTGGACATGTTTTGTCGTATATCAATGTTACTTGAAATTGTGATCTCTAGTCAATGGCATGTGCCCTTTTTGAATGCTATAGCCTGCCTAGCAGGGGTGGGTGGGGGaagcttatttttttcccttcccCCTTTTTTTCCAAGAGTAAATTCTTGCAGACAGCTATGATAGGAGTCTAAGTTGCTTCTGTAAGCAtagttttgttattattattatttttaaaatatgcattttgGTAGGAAGAACTGCCCATGCTTTATTTGGTGCCGATTAGGTGCTAATGTTGAAGGAGATTtagttttgatttattttatttttttgaagggGGGGCGTGCATGACGGGATATCTGCCTCAGATGCTCTGATTGTAATGTAACTGATTTTGGTGTTTTGTCCAAatttattcagtaaataaattGTGAACTGCACATTGAAAAa

Function

symbol description
trib2 Predicted to enable mitogen-activated protein kinase kinase binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and regulation of MAP kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human TRIB2 (tribbles pseudokinase 2).

NR:

description
tribbles homolog 2-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08814 TRIB1_2; tribbles homolog 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229705.3 True 4197 mRNA 0.45 3 45358910 45365846

Neighbor

gene id symbol gene type direction distance location
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 43655 44983244 ~ 45315255 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 507817 44808826 ~ 44851093 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 598705 44737167 ~ 44760205 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 783635 44525886 ~ 44575275 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding downstream 991070 44360099 ~ 44367840 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding upstream 75592 45441438 ~ 45448166 (-)
gpcpd1 gpcpd1,LOC107697181 coding upstream 85440 45451286 ~ 45465612 (-)
trmt6 trmt6,LOC107593280 coding upstream 135805 45501651 ~ 45512516 (-)
fermt1 fermt1,LOC106571740 coding upstream 149349 45515195 ~ 45531393 (-)
pak5 pak5 coding upstream 582182 45948028 ~ 46055938 (-)
G26347 NA non-coding downstream 118692 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 197980 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 244949 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 493844 44862184 ~ 44865066 (-)
G26278 NA non-coding downstream 505339 44853068 ~ 44853571 (-)
G26386 NA non-coding upstream 42587 45408433 ~ 45410036 (-)
LOC111191909 NA non-coding upstream 231741 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 367470 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 477328 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 481771 45847617 ~ 45849592 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 473109 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 488220 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 559405 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1459150 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 1680048 43675025 ~ 43678862 (-)
G26388 NA other upstream 70263 45436109 ~ 45437585 (-)
G26588 NA other upstream 569307 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 926241 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 1061571 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 1153025 46518871 ~ 46525996 (-)

Expression


Co-expression Network