wdcp (wdcp,LOC107600078)


Basic Information

Item Value
gene id wdcp
gene name wdcp,LOC107600078
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44803559 ~ 44808849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229711.3
GTCAAAAATGACCGTGTGGAAACATCCTCGCGCGCCGGTGTTTGAGCTGTTGCGGTGGAAACACATGTGatgttgtgtttttatagACAGGAAAATCATGGACCTTGGAAAAGCCAAACTTCTGAGAACAGGATTAAACACACTCCTCCAGGCCATTCACCCTGTGCATGGAATAGCTTGGACTGATGGGAGGCAGGTTTGCCTCACTTCTTGCTACTTTGTCAATGGTGATCCCAAGTTTGGCGACACCAATGTCATTGGACAGTTTGAACATGTCTTGGGACTTTTCTGGGGACCTCTTTGTTGCTCTGGTTCTCCTGCTCTCCTGGCCGTGCAGCACAAGAAGCACGTCACCGTGTGGCAGCTTCAGCTCAGCGCCCTGGAGCAGAACAAGCTGTTGTGCACTCAGACGTGTGAAATGAGTGAGCCTTTCCCACTGCTTTCTCAGGGCTGCGTCTGGCATCCCAAGCTAGACATCTTGGCCGTCTTGACCAAGCGGGACGCCTCTGTCCTGTTTTCCGTGCGTGTGGATAACAGGCGAGTAAAGGCAGACATCCGGGGCAGTGGCCTGATCCACTGTGCGTGCTGGACTAAAGATGGAACCAGGTTTGTGGTTGCAATTGGCAGCGCTCTTCATTCTTACATATGGAATGACATCCAGAAAAGCTTGGTGGCCTGCtccttttgccccatttttgaTGTTGGGGGCTATATCTGCGCGATCGAGTCTACAGACGAGGCTCAGGTAGCCGTAACCACTGAGCTGCCGCTGGACAAAATCTGTGGGCTCAATGCTGGTATTGCCTTTGACCTGCCGAACGAATCGGACCAGTCTTCTCAGCAGTCTCCAGTAGTCATGTTGGATCAGGATGTTTCTTTGGACTCCAGGAGAAGGTCATTTGATTCAGAGCGCTCACTACCTCTAGGGTTCATCTCGTCCTCCAGTCCCATTGACCTTACGAACATTTTGGCTAAGCACAGGAAGTCAGATCCCAGCCCCCTCATTCACTTGAGACGGCGGGATAATTTGACTGGAACGGGACAAGACTCCTCTCACTTAATTTTAGTCAAGTATGAGCGGAAGGTCACCACCACCAGGAAAGTGAGCATCCCTGGCATCCTAGTCCCTGACATTGTTGCCTTTGATCCCAGAGGGAGCACAGTAGCAGTGGCTTCCAACACCTGCAACATGGTGCTGATCTACTCCATCATGGCGTCCTCCATGCCCAATGTTCAACAGATTCATCTGCAGAAGAATGAGAGACCAAAAGGGGTGTGTTTCATCaacagcaagatgatgctgctcATGGTTGGTCGGCAGCGATCCAACGACCCCGCCTTCCTTCCATCTTCAAACACGGACAAATTTGTCCTTCGGCTTATGGCTAAAGAACTGTTGTTTGACGAGGACACCACCTCTCCAGTTGTACAGAAGCCTGAGTCTCCCAGTAACTTCCACGGGGTCAGGAGACATTCAGAGAACGTCTCCAAGGACTTGGCAGTGAGGGATCTTGTCCTTCCAGGAGGTTCAGTAATCCACTCCCCAAACAGCAGGAGGAAGCTGATTGAGGAGTTACGCAGCTCAGAGCCCAGTCCGGTGCCAAGCTCAGTTGACTACTCTGACAGAGCCACGTCTAGCACCTCGTCCATCACTTTGGAAAACTACGACATGGATCACATCAGCCGCATGGCCACTCTCGCAGTGGCTGGCCAGGCAAGCCGGGAATCCAGTCGACCGTGTTCCCCACGGTATGAGCCTTCAGAAAAGCTGCTCTCTGACCCCCCTATGTTGCAGAATAGCTGTTCTTCAAAAGAAAAGAACCTGGAGCAGCTAGCACACAACATGGAGCGGATATTTGCACGATTTGATGAGGTGAGGCAGTGCCTGACTGAAATCAAGGACTATGCCCAGAATGGGAGAAAACCCTTCATCAGCTACCCGGCTGCCTCTGAGCCACAGTACATCCATGTAACATGTCAGAAGCAGCTGTCAGAGAATGTTTACACAGACGAGAGAAGGCCAGTGCTATTGTATGATGGAAGGCTTAGCCTTCGAGTTGTTCAGGAACTCTTCAGCCTGACTGTTGTGGAGATGATGCATGGACCAATGTGGATTATCCTGGTGGCTGATGCCGATGGATTTGTACCGCTCACCTTCAAGCACAAGGAGGAGATAACAGTACGGAGCGCAACGAGGAGGTGTCCCTTCAAGCCATTTAGCTGTACTGATGACGTGTTTCCTGAAAATGCACATCCTCCACACACGGAATAATGGAATGGTGAATTTGTGTTTTAGCCTCTACAGCACAAAGCTGAGGAATGAGGATTTACTGGACATGTTAAAAAGGCTTACGTTAAAGACAATGCCTCATAATTCCTGTTTACAGGGCACTAGTGGCTTTTCTGTAGTGTTGCCATTGTAAATCcctatattgtattttttgtatttctgaaAGCAAATATTGGAGTGCCTGCTTTAACGGATTTTTTACTGTTAGCATGCACCTCAAGACACCTCAACAAGTGTTTTGAatgaaatcatttatttttgtagaGATTTCAAATGAATGTATTTCTAAGGCAtgtgtatatatctgtatatgtatatgcacGTAACCCtataaattatgttattaattTCTATGTCCTTGATAGAACTTAGTAGCATTAGTTTTGGATATGGTTACATTTTCGAAAATGTATGAATCTCTCCGAATCTCTCCCAACTTCTATGCACTGTGAACCGACAAATGAACAGTAACTTCAATAAGCATAATTAAAGTCAAATTATTTATTCTTA
>XM_022686640.1
GAAACATCCTCGCGCGCCGGTGTTTGAGCTGTTGCGGTGGAAACACATGTGatgttgtgtttttatagGAAAATCATGGACCTTGGAAAAGCCAAACTTCTGAGAACAGGATTAAACACACTCCTCCAGGCCATTCACCCTGTGCATGGAATAGCTTGGACTGATGGGAGGCAGGTTTGCCTCACTTCTTGCTACTTTGTCAATGGTGATCCCAAGTTTGGCGACACCAATGTCATTGGACAGTTTGAACATGTCTTGGGACTTTTCTGGGGACCTCTTTGTTGCTCTGGTTCTCCTGCTCTCCTGGCCGTGCAGCACAAGAAGCACGTCACCGTGTGGCAGCTTCAGCTCAGCGCCCTGGAGCAGAACAAGCTGTTGTGCACTCAGACGTGTGAAATGAGTGAGCCTTTCCCACTGCTTTCTCAGGGCTGCGTCTGGCATCCCAAGCTAGACATCTTGGCCGTCTTGACCAAGCGGGACGCCTCTGTCCTGTTTTCCGTGCGTGTGGATAACAGGCGAGTAAAGGCAGACATCCGGGGCAGTGGCCTGATCCACTGTGCGTGCTGGACTAAAGATGGAACCAGGTTTGTGGTTGCAATTGGCAGCGCTCTTCATTCTTACATATGGAATGACATCCAGAAAAGCTTGGTGGCCTGCtccttttgccccatttttgaTGTTGGGGGCTATATCTGCGCGATCGAGTCTACAGACGAGGCTCAGGTAGCCGTAACCACTGAGCTGCCGCTGGACAAAATCTGTGGGCTCAATGCTGGTATTGCCTTTGACCTGCCGAACGAATCGGACCAGTCTTCTCAGCAGTCTCCAGTAGTCATGTTGGATCAGGATGTTTCTTTGGACTCCAGGAGAAGGTCATTTGATTCAGAGCGCTCACTACCTCTAGGGTTCATCTCGTCCTCCAGTCCCATTGACCTTACGAACATTTTGGCTAAGCACAGGAAGTCAGATCCCAGCCCCCTCATTCACTTGAGACGGCGGGATAATTTGACTGGAACGGGACAAGACTCCTCTCACTTAATTTTAGTCAAGTATGAGCGGAAGGTCACCACCACCAGGAAAGTGAGCATCCCTGGCATCCTAGTCCCTGACATTGTTGCCTTTGATCCCAGAGGGAGCACAGTAGCAGTGGCTTCCAACACCTGCAACATGGTGCTGATCTACTCCATCATGGCGTCCTCCATGCCCAATGTTCAACAGATTCATCTGCAGAAGAATGAGAGACCAAAAGGGGTGTGTTTCATCaacagcaagatgatgctgctcATGGTTGGTCGGCAGCGATCCAACGACCCCGCCTTCCTTCCATCTTCAAACACGGACAAATTTGTCCTTCGGCTTATGGCTAAAGAACTGTTGTTTGACGAGGACACCACCTCTCCAGTTGTACAGAAGCCTGAGTCTCCCAGTAACTTCCACGGGGTCAGGAGACATTCAGAGAACGTCTCCAAGGACTTGGCAGTGAGGGATCTTGTCCTTCCAGGAGGTTCAGTAATCCACTCCCCAAACAGCAGGAGGAAGCTGATTGAGGAGTTACGCAGCTCAGAGCCCAGTCCGGTGCCAAGCTCAGTTGACTACTCTGACAGAGCCACGTCTAGCACCTCGTCCATCACTTTGGAAAACTACGACATGGATCACATCAGCCGCATGGCCACTCTCGCAGTGGCTGGCCAGGCAAGCCGGGAATCCAGTCGACCGTGTTCCCCACGGTATGAGCCTTCAGAAAAGCTGCTCTCTGACCCCCCTATGTTGCAGAATAGCTGTTCTTCAAAAGAAAAGAACCTGGAGCAGCTAGCACACAACATGGAGCGGATATTTGCACGATTTGATGAGGTGAGGCAGTGCCTGACTGAAATCAAGGACTATGCCCAGAATGGGAGAAAACCCTTCATCAGCTACCCGGCTGCCTCTGAGCCACAGTACATCCATGTAACATGTCAGAAGCAGCTGTCAGAGAATGTTTACACAGACGAGAGAAGGCCAGTGCTATTGTATGATGGAAGGCTTAGCCTTCGAGTTGTTCAGGAACTCTTCAGCCTGACTGTTGTGGAGATGATGCATGGACCAATGTGGATTATCCTGGTGGCTGATGCCGATGGATTTGTACCGCTCACCTTCAAGCACAAGGAGGAGATAACAGTACGGAGCGCAACGAGGAGGTGTCCCTTCAAGCCATTTAGCTGTACTGATGACGTGTTTCCTGAAAATGCACATCCTCCACACACGGAATAATGGAATGGTGAATTTGTGTTTTAGCCTCTACAGCACAAAGCTGAGGAATGAGGATTTACTGGACATGTTAAAAAGGCTTACGTTAAAGACAATGCCTCATAATTCCTGTTTACAGGGCACTAGTGGCTTTTCTGTAGTGTTGCCATTGTAAATCcctatattgtattttttgtatttctgaaAGCAAATATTGGAGTGCCTGCTTTAACGGATTTTTTACTGTTAGCATGCACCTCAAGACACCTCAACAAGTGTTTTGAatgaaatcatttatttttgtagaGATTTCAAATGAATGTATTTCTAAGGCAtgtgtatatatctgtatatgtatatgcacGTAACCCtataaattatgttattaattTCTATGTCCTTGATAGAACTTAGTAGCATTAGTTTTGGATATGGTTACATTTTCGAAAATGTATGAATCTCTCCGAATCTCTCCCAACTTCTATGCACTGTGAACCGACAAATGAACAGTAACTTCAATAAGCATAATTAAAGTCAAATTATTTATTCTTA

Function

symbol description
wdcp Predicted to enable kinase binding activity. Orthologous to human WDCP (WD repeat and coiled coil containing).

NR:

description
PREDICTED: WD repeat and coiled-coil-containing protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229711.3 True 2800 mRNA 0.48 4 44803559 44808849
XM_022686640.1 False 2778 mRNA 0.48 4 44803577 44808849

Neighbor

gene id symbol gene type direction distance location
LOC111197225 LOC108410507 coding upstream 76354 44710373 ~ 44727205 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 110387 44673130 ~ 44693172 (+)
LOC103046392 LOC103046392,LOC108414880 coding upstream 323655 44474148 ~ 44479904 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding upstream 331628 44460685 ~ 44471931 (+)
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding upstream 343300 44417438 ~ 44460259 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding downstream 63615 44872464 ~ 44960236 (+)
LOC103023922 NA coding downstream 625070 45433919 ~ 45441256 (+)
LOC103022161 NA coding downstream 686832 45495681 ~ 45501646 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 751697 45560546 ~ 45570484 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 806713 45615562 ~ 45785454 (+)
G26235 NA non-coding upstream 2913 44799984 ~ 44800646 (+)
G26226 NA non-coding upstream 33557 44769262 ~ 44770002 (+)
G26225 NA non-coding upstream 35072 44768157 ~ 44768487 (+)
G26217 NA non-coding upstream 65444 44737167 ~ 44738115 (+)
G26216 NA non-coding upstream 66906 44735834 ~ 44736653 (+)
G26280 NA non-coding downstream 45032 44853881 ~ 44854510 (+)
G26286 NA non-coding downstream 56294 44865143 ~ 44865684 (+)
G26322 NA non-coding downstream 302336 45111185 ~ 45112968 (+)
G26390 NA non-coding downstream 641160 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding downstream 715639 45524488 ~ 45528585 (+)
LOC103033920 LOC108416105 other upstream 1309243 43490323 ~ 43494316 (+)
G25880 NA other upstream 1378653 43424392 ~ 43424906 (+)
G25879 NA other upstream 1381513 43421771 ~ 43422046 (+)
rps29 NA other upstream 1440115 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1541460 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1719519 46528368 ~ 46549553 (+)
G26915 NA other downstream 3469418 48278267 ~ 48315894 (+)
G26995 NA other downstream 3746948 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3769954 48578803 ~ 48618075 (+)
G27075 NA other downstream 3932365 48741214 ~ 48742439 (+)

Expression


Co-expression Network