G58310


Basic Information

Item Value
gene id G58310
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13833541 ~ 13835879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66386
CTCTCCATTTCCAGCCATATGCAAAGCATGCTGGGAACTAACAAAGGTGTCTCTAAATAAAACTGCATAATTAAGCTAATTCTCTTAAAATAAATAGGTAGCCTCCTTTCTTTAATTTTATTTGCTTAAACGGTTCCTCAATTCAAGCATCAAAACTATGCAAGTTTCCCTAAAAAAATTAGGAAAATGTATCTCATGGTTTTATTAGTGAAATGTTCTCAATATTTTCTATACAACACTGAACCACAATTTTATTAATAACTATTTTTAATTATCACCTTAGTTTTTTTTAATGAAAATTACAAGACCGAAAATTCATTTTTTACAGTATAGTGATAACACACTGCAAACTGTGGACACACACACCCAGAACAGTGGACAGACATTTTTGCAAGCGATTGGGGGTTAGGTGCCTTGCTCCAGATGGTATTGAGAGTCGAACCCACAACCTTCAGGTTACAACTCTCTAACCATTAGGCCACAACTGCCCCACTGAACTGACTTGAGCTGAATAATGAAACTATCACCTTCTGTAGAGCTGTTTCTTTATAATTATTTGTGAAATTTAGCAATTTCTAAGTGAAAATTGTTTCAAAGCCACATTTTTTTTTCAGTGTACGTTAAGAATGGGTTTTATACTACTATTATTTTATACTACTATTGTCCAAAACCCCACAAAATCATCAGAAGACACTGTATGTCCTTATGTCATCATTATTAAAACGCTGAAAAAATAGTTCAGTTTAATTAAAAATTGACTATTTTACCCAAAATATGTGTATGCAATGCATTTATACATGTTAGAGTATTGTGCTGTTAGTTTAGCAACATCAAACTCTATTTGAAATAATTTGTGAGTTAAGTCTCCATCTCAGGTTTTGGGTGCTGCCTATGTAAGCAGTACGCTATGTAGGCAGTAGGGAGCTCACTAGGTATTGTGACATTTCCTAAATGACTGTGCACTGCAACCCATCACAATTCAGTATTCAAATAGATGTAAGAAAGATGACCAATCATAATTCAGAATGCGGCTATTATGATGACATTGTTGCTGTTGGTTACATTAAGTGTTCTATCAATGTTCCATGAAAGTTTCAATTGTACAAAAGCACACCCAAGGCTAAAATTGTCCACAAAATGGTTCGAAATTAGTCAACGGTTCGGGCTGAATCAATAGCACAAGTTCAATACTTAGTGTCAGGGCTTTAGAACAAACCCTAACCAGAATGTTTTAGGAATATCAATACAGATCTGCCATGCACACGTTACGATAATCTCTTCAGCGTTCCATTCCAGAGCTGCCCCACTTCTGTAATCCGTACATCATAAGACAGCATCAGACGGCGAGTGCAGTTTGTATTGTGTGGGCTATCACACATGGAAATGGAAGAACTCCAATGTCTTGTTCCTGGTTGAGGTTGTGTCTGGATAGAGATGCTTAGCCCTTTAACAAAGCCTAATTACAGGGACGGAGTCCTTGAAGCACCATGTTCATTGGCACAGGTGAAAGCGCTGGATTGTAATGTCAATATCTCTCCAGCTCCTTGATCAGCCCATTTAATCGTGATTTTAGCTGCAACCTTCACGTTAGCACACCAGATCTTTACCCATTACGCAACCCCCACACTATGGAGGTGGCAATGAAACCATTAGTGACCCAGCTGGAGTGATAAGATTGCGGTTCAATTCATCTAGCTTGCATTACTTGTCATGCATGAAATGTTCCTTCAATGAATTGCTGCGACACAGATAGAGACCAACTTTGGACTTACCTTTGAGATGTGCGTTTGTACTTCTGCCTGTAAGACAAAAAATGGAAGCACATTAGCTTGCAGCCATAATGAGCACATGCCATGGGAGAAAGTACTTTTACGTGTGTAAAGTACGGGACTGACAAGAACAGCATGCTCTATTTCCAGTGTGAACAAAGCCAGGATCTCAAGGAATTCTCACTTTTCCACTGCAGTGAATTAGTTATCACATGGAGCAGCTGTTATCTGACGTGTTTTAGACTGACGGTTTGAAAATCGACAGCGCATTGGGAAGTTTCCAAGGAACAACTGTGGCCTGGATGTTGATCAGTAGAGCTGTTTCAACGCATCCCAAAACAACGCTGTCTACCTAAGATGGGATGAATGGATGAGCAAGATCGGTCTATAGGAATAGATCCAAAGAGGCTTGGATGAGCTTTGCAGGGAGGTGATGGAACTAGACTGGTTTAAATCCCGGGATCAGCCATTCAGTGACTCCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66386 True 2253 lncRNA 0.39 2 13833541 13835879

Neighbor

gene id symbol gene type direction distance location
CI01000009_13798741_13799037 NA coding upstream 34350 13796884 ~ 13799191 (+)
CI01000009_13752424_13753460 NA coding upstream 79718 13752424 ~ 13753823 (+)
CI01000009_13696525_13718933 SSFA2 coding upstream 114608 13696525 ~ 13718933 (+)
CI01000009_13549003_13580198 ITGA4 coding upstream 253308 13549003 ~ 13580233 (+)
CI01000009_13394582_13476351 UBE2E3 coding upstream 356734 13392306 ~ 13476807 (+)
CI01000009_13884165_13939556 NCKAP1 coding downstream 47968 13883847 ~ 13939688 (+)
CI01000009_13942733_13946356 FRZB coding downstream 106642 13942521 ~ 13946405 (+)
CI01000009_14007631_14010487 NA coding downstream 171208 14007087 ~ 14010693 (+)
CI01000009_14033666_14036472 RETSATL coding downstream 197787 14033559 ~ 14036472 (+)
CI01000009_14039505_14043545 RETSATL coding downstream 203330 14039209 ~ 14043609 (+)
G58301 NA non-coding upstream 84718 13745821 ~ 13748823 (+)
G58307 NA non-coding upstream 187145 13637284 ~ 13646396 (+)
G58252 NA non-coding upstream 248285 13523613 ~ 13585256 (+)
G58205 NA non-coding upstream 447344 13385986 ~ 13386197 (+)
G58168 NA non-coding upstream 450437 13382604 ~ 13383104 (+)
G58389 NA non-coding downstream 139509 13975388 ~ 13978604 (+)
G58388 NA non-coding downstream 160946 13996825 ~ 14004082 (+)
G58384 NA non-coding downstream 176026 14011905 ~ 14018473 (+)
G58421 NA non-coding downstream 215098 14050977 ~ 14051404 (+)
G58467 NA non-coding downstream 261612 14097491 ~ 14097703 (+)
G58028 NA other upstream 689933 13140378 ~ 13143608 (+)
G57701 NA other upstream 810403 13006643 ~ 13023138 (+)
G57691 NA other upstream 915076 12906444 ~ 12918465 (+)
G57682 NA other upstream 941202 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1397524 12432538 ~ 12436017 (+)
G58382 NA other downstream 197680 14039757 ~ 14039901 (+)
G58455 NA other downstream 410816 14246695 ~ 14258526 (+)
G58558 NA other downstream 661057 14496936 ~ 14501514 (+)
G58649 NA other downstream 813845 14649724 ~ 14652022 (+)
G58711 NA other downstream 930780 14766659 ~ 14773773 (+)

Expression


Co-expression Network