prpf39 (prpf39)



Basic Information


Item Value
gene id prpf39
gene name prpf39
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46519113 ~ 46525826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007230723.2
ATGGAACACTCTGACCTGGATCTTTCAGACGAGCCCATGACGGGGATGGTTAATGCAGACACCCCTGACAATGGGGACTCTAATGCTGTGGAAGGTGCAGGGGATAGTTTCATTTCAAACCTTCCCAACTTAACCCAGGATGCTCAGTGGACAATGGACCAAGTTCCTGGCACACTTGCTGCTCTTGCAAGCCAGCAGGTTGCAGGACAAGAGGGGGAGAAGTTCTCAGTGGATGAGCCTTTAAAATCAGTCGAGCAAAAATCTGATGTTCCTGAACAAAATGCCTCTGAACAACCTGAAAATTCTGTTTGTGTTGCTGAAACAAATGGACAAACTGCAGAGCTGAGCTCTGTAATGCAGACCGAGTTGGACAGTTCCGAAAGTCCTGCGAACATGGAACTTGAGGATGCATCCAAAGAAGAAAGTGAGGAAGCTGTGGGTGATGCGGCGGGTGATGCTGCTGAGGGAAAAGAGGCAATGCCTTCTGACTTTGACCGGCTATACAAAGTAGTCGAGGATAACCCTGAAGATTTTAATGGATGGGTCTACCTTCTGCAGTATGTGGAACAAGAAAACCACATTTTGGCTTCAAGAAGGGCATTTGATGCCTTTTTCCTTCACTATCCATACTGCTATGGTTACTGGAAGAAATACGCAGACATTGAGAAAAAGCATGGTTTCATACAGGAAGCAGATGAgGTGTACCGAAGAGGTTTACAGGCCATCCCGCTTAGCGTTGACTTGTGGCTTCACTACATAGCTTTTCTAAGGGAGAACCAAGACAACAGTGACGGAGAAGCTGAAAGCCGCATACGAGCTGCGTATGAGCATGCAGTCCTAGCTGCGGGTACTGATTTCCGGTCAGATCGTCTGTGGGAAGCTTATATCAACTGGGAGACTGAACAGGAGAAGCTGGCCAACGTTACAGCTGTCTATGACCGTATCCTGGGTATTCCCACACAGCTGTATTCTCAGCATTTCCAGAGgtttaaagATCATGTGCAGAATGGTAATCCCAAGCACTTTCTATCCGAAGAGGAGTTTGTGCAGCTTAGGTTGGAGCTTGCTGCTGCCAATAAGCCCACTGTTGAGGGAGAGGAAGAAGCCCCCAGTGAAGAGCTTCCACCAGGCACTGAAGACCTCCCTGACCCTGCAAAGAGAGTCACGGAGATCGAGAATATGCGGCATAAGGTGATCGAGGCACGGCAAGAGATATTTAACCACAATGAGCATGAAGTCAGCAAGCGCTGGGCTTTTGAGGAAGGGATCAAGCGTCCATATTTCCACGTAAAGGCCTTGGAGAAAACTCAGCTCAGCAACTGGAGGGAGTATCTGGACTTTGAACTGGAGAATGGGACACCTGAACGTGTAGTGGTTCTGTTTGAGCGCTGCCTGATCGCCTGTGCCCTTTATGAGGAATTCTGGATAAAGTATGCCAAGTACTTAGAGAGCTACAGTACAGAGGGAGTGAGACATGTGTACAAGAAAGCATGCACCATCCACCTGCCCAAGAAGGCCAACATCCATTTTCTCTGGGCAGCCTTTGAGGAACAACAAGGGAACATTGAGGAAGCACGAGGCATCCTGAAAAGCCTAGAGGAGTCAGTTCCAGGCCTGGCCATGGTGAGACTACGTCGGGTGAGTCTGGAGCGTCGACATGGTAATTTGGATGAAGCGGAGACACTCCTGCGGGACGCTATTCAGAATGGAAAAAATGCAACAGAATCATCATTCTACTCTGTGAAACTAGCAAGACAGCTCCTCAAAGTGCAGCGGAGTATTGGAAAGGCTAGAAAAGTACTGCTAGAAGCCATAGAAAAAGATGAGACCAGTCCTAAGCTGTACCTAAACTTGCTGGAGTTGGAGTACAGTGGAGATGTACAGCAAAATGAAGCAGAAATCCTGGCGTGCTTTGATCGTGCCATCAACAGTTCAATGCAACTGGAGTCACGTATCACTTTCTCACAGCGTAAAGTGGACTTTCTAGAAGATTTTGGCAGTGACATAAAtgtGCTTGTGGCTGCGTATGAACAACACCAGAAACTTCTGAAAGAACAAGACTCAtcaaaaagaaaagcagagaaTGGGTCTCAAGAACCAGACTCAAAAAGACAGCGTGTGGATGATGCCTCTGGAGCATCGGGTCAGGTGGCTCCAGACATGCAAGCCAACCATGGGTACAACTATAACAACTGGTATCAGCAGTACAACGCCTGGGGAACCCAAAATTCCTGGGGCCAGTATGGCCAGTATCAGTATAACCAGTACTATCCCCCACCCCCCACATGATGACATGAAGTATAATTGAACTTTGTCCTTTTTATCCATTCTTACTGATTCTCATGACATTCTCAGTCATTTgacagtttactttgtgttttttgagtATGTGTTGCAAATGAGTTTTTCTTCTGTGGAAAATGTGCAGATAAGTTTAATTTTAGCCTAATTTAGCGTGGTCTCTTTTTGGAAACTTGGTAGTTTGACCGTTTTTGTATGGAAAATCTCAACTTTAATTCTTTAACTTTCTCTGCTCTCCTTAATGTGATGTCTTCATGTTTTCAGAGCCCAaagtaaaatgaagtttttAGTTTGACCTTTTGAATTTCATAATAAAGAGATTGGTATCCTTGa

Function


symbol description
prpf39 Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39).

NR:

description
PREDICTED: pre-mRNA-processing factor 39 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007230723.2 True 2634 mRNA 0.46 14 46519113 46525826

Neighbor


gene id symbol gene type direction distance location
otx2 LOC108410484 coding upstream 58299 46456013 ~ 46460814 (+)
c3h14orf37 LOC107659812,LOC107574488,LOC107704373,LOC107713862 coding upstream 89064 46420148 ~ 46430049 (+)
entpd5 LOC103043327 coding upstream 166913 46341857 ~ 46352200 (+)
LOC103029419 LOC108411685,LOC108258103,LOC101066055 coding upstream 218989 46292008 ~ 46300124 (+)
LOC103028674 LOC108411639,LOC102297057 coding upstream 229833 46234679 ~ 46289280 (+)
LOC103044458 LOC108424466 coding downstream 589626 47115452 ~ 47119014 (+)
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding downstream 613723 47139549 ~ 47200208 (+)
man1a1 man1a1,LOC107727625 coding downstream 867421 47393247 ~ 47590416 (+)
LOC103032605 NA coding downstream 1392520 47918346 ~ 47926402 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding downstream 1414611 47940437 ~ 48196539 (+)
G26687 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 non-coding upstream 4274 46511285 ~ 46514839 (+)
G26679 NA non-coding upstream 38722 46480191 ~ 46480391 (+)
G26667 NA non-coding upstream 108238 46410431 ~ 46410875 (+)
G26529 NA non-coding upstream 109123 46363884 ~ 46409990 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding upstream 161247 46355885 ~ 46357866 (+)
G26705 fkbp3 non-coding downstream 7982 46533808 ~ 46535925 (+)
G26710 NA non-coding downstream 58197 46584023 ~ 46623216 (+)
G26717 NA non-coding downstream 136311 46662137 ~ 46663431 (+)
G26725 NA non-coding downstream 222664 46748490 ~ 46769667 (+)
G26762 NA non-coding downstream 486538 47012364 ~ 47012698 (+)
LOC103033920 LOC108416105 other upstream 3024797 43490323 ~ 43494316 (+)
G25880 NA other upstream 3094207 43424392 ~ 43424906 (+)
G25879 NA other upstream 3097067 43421771 ~ 43422046 (+)
rps29 NA other upstream 3155669 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 3257014 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 2542 46528368 ~ 46549553 (+)
G26915 NA other downstream 1752441 48278267 ~ 48315894 (+)
G26995 NA other downstream 2029971 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 2052977 48578803 ~ 48618075 (+)
G27075 NA other downstream 2215388 48741214 ~ 48742439 (+)

Expression



Co-expression Network