mgat2 (mgat2,LOC107728126,LOC107564584,LOC107704380)


Basic Information

Item Value
gene id mgat2
gene name mgat2,LOC107728126,LOC107564584,LOC107704380
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43350893 ~ 43356000 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230734.3
TGGGAAATAGGTCGTCAGCAGTCCAGTTTTctcagagagggagagagagagagagcgagagagagtgagagagagagcgagagctcCAGCCtggcgcgtgtgtgtgttttattttctcgATATCTGGAGGAACAGAGGCGCTGGAACAGAAATGGATTAAGAATAATTTATCAGAGCTGTGCTGCACCGACTCTACGGGCTCTGGGAGCCGCAGTGTTGAACCGCGCGAGCTGTTTTAAGATGCCCCTCTCCTGCCTCTAATCAGCATGCCTTATGGGATTATTCCTTTGCAACATTGATATCCCATCAAAGTTTACATTCCATTATAGGAGACCTGAAGTAAAAGCTCAACTTTCTACAAAACGTTTCATAATAAAACTGGAGCAGagtatattttaatactttCTCTACCATTTTgggattttgtttgtttttatttttttactgtcctTTGTCCTACTATCCCACTGGGTGAAGGCTTATCATGAGATTCCGAATCTACAAGAGGAAAGTTGTAATACTGACTCTGGTGGTGGTTGTGTGCGGATTTGCCTTTTGGAGTAGCgggaaacagaaaaaagaaagtgcaGTTTTTCCAAAGGAAGTCGAGACTGTTAGGAGGAGCAGCGTTAGCAGCCAGGCTCAGGTCACAATCCCAGTAACCCGGAAACCAGTTGAACGAAACGTAACCCTTCCAGAAAAACAAGTTGCCCTCAAGCTTGAGTCAGATAATAGCACACTGGTGTACCGGGGGATTGTGTTCCAGATCAACTTTGACCAGACGTTGAGAAACGAAGACAAGTTTGGATCAGTGCGACAGAAGGATGACTTGGTGATAGTGGTTCAAGTTCATAACCGACCAGAGTACCTGAGGCTGCTGGTAGAAAGCTTAAGAAAAGCGAAAGGCATTGAAAATGTCCTGCTAATATTCAGCCATGACTTCTGGTCCCAGGAGATTAACCAAGTTGTGTCATCCATTGACTTCTGCCTTGTTCTTCAAATATTCTTCCCATTCAGCATCCAGCTCTACCCTCACGAGTTCCCTGGTAATGACCCCAGAGACTGCCCCAGAGACATTTCCAAGAAAGACGCCTTAAAACTTGGCTGCCTAAATGCAGAGTACCCAGACTCATTTGGCCATTACCGCGAAGCCAAATTCTCTCAAACCAAACACCACTGGTGGTGGAAGCTGCATTTTGTGTGGGACAGAGTACGTGTCTTAAAGGATCACAAAGGACTAGTGCTGCTTATTGAGGAGGACCACTACTTGGCCCCAGATTTCTACCATGTCCTCAAGCTGATGTCCTCTCTGAAGAGAGATCAGTGCCCCGACTGTGACATCCTTTCTCTAGGAAGCTATGGTCACATTGGCTATGCCAGCAAAGCCAACAGAGTGGAGGCCAAGGCCTGGAAATCCACAGAGCACAACATGGGCATGGCAATGAATCGGGAGACGTACGAGAAACTCATCAAGTGCACAGATAACTTCTGCACTTACGACGATTACAACTGGGACTGGTCCCTGCAGCACCTCACCGTAGCCTGCCTGCCCACATTCTGGAAGGTCATGGTGAGTGAAGCGCCTCGCATCTTTCATGCTGGAGATTGTGGCATGCACCACAAGAAGTCCACCTGCATGCCCAACACTCAGAAGACAAAGATAGAAAACATTCTTCAGAGCAGCTCCAACCAGCTGTTCCCAAAAACTTTGCTCATCACAAAGAGACTGCCTGCATCAGGTGCTGGGGGAGTGGCCCCTCATGTTAAAAATGGTGGATGGGGAGATATCAGGGACCATGAACTCTGCAAGAGCTATCTTCGGTTACAGTGACCTTATTCTCttttactgtttgtttgttttttgcatcCTCTAATGAAAGCCTTTACAAATTCTTAACGGACTATATCTTTATATTGCCTGTTTTGTTgaaatattccaaataaaaacgtATGTGGGTTT

Function

symbol description
mgat2 Predicted to enable alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be located in Golgi stack and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).

NR:

description
PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230734.3 True 1960 mRNA 0.46 2 43350893 43356000

Neighbor

gene id symbol gene type direction distance location
LOC103024454 hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 coding downstream 9377 43336847 ~ 43341516 (-)
LOC103024139 LOC107100300,LOC107378075,LOC108257811 coding downstream 14224 43328607 ~ 43336669 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding downstream 24861 43295459 ~ 43326032 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding downstream 161534 43179427 ~ 43189359 (-)
LOC103042238 hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003 coding downstream 287725 43051888 ~ 43063168 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding upstream 243657 43599657 ~ 43664802 (-)
LOC103034775 NA coding upstream 310847 43666847 ~ 43672990 (-)
LOC103035096 NA coding upstream 332898 43688898 ~ 43703969 (-)
LOC103035417 NA coding upstream 353728 43709728 ~ 43716198 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding upstream 590979 43946979 ~ 43981364 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 171674 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 179679 43160421 ~ 43171214 (-)
G25776 NA non-coding downstream 215607 43119814 ~ 43135286 (-)
G25774 NA non-coding downstream 219141 43124819 ~ 43131752 (-)
G25777 NA non-coding downstream 223560 43061698 ~ 43127333 (-)
G25874 NA non-coding upstream 4488 43360488 ~ 43363090 (-)
G25902 NA non-coding upstream 105669 43461669 ~ 43462154 (-)
G25903 NA non-coding upstream 128089 43484089 ~ 43484368 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding upstream 510376 43866376 ~ 43885038 (-)
G26009 NA non-coding upstream 565876 43921876 ~ 43924352 (-)
G25785 NA other downstream 239492 43098822 ~ 43111401 (-)
G25678 NA other downstream 632504 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1470469 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 1485049 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1908399 41436041 ~ 41442494 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 139419 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 319025 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 534629 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1413264 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 1500099 44856099 ~ 44870690 (-)

Expression


Co-expression Network