Item | Value |
---|---|
gene id | LOC103025090 |
gene name | ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035899.1 |
NCBI id | CM008302.1 |
chromosome length | 74127438 |
location | 43295459 ~ 43326032 (-) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
ppp2r5cb | Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Orthologous to human PPP2R5C (protein phosphatase 2 regulatory subunit B'gamma). |
ppp2r5c | Enables peptidase activity and protein phosphatase regulator activity. Involved in DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; and negative regulation of cell population proliferation. Acts upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process and protein processing. Located in several cellular components, including Golgi apparatus; chromosome, centromeric region; and nucleoplasm. Is integral component of membrane. Part of protein phosphatase type 2A complex. |
description |
---|
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0050790 | regulation of catalytic activity | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0000159 | protein phosphatase type 2A complex | cellular_component |
id | description |
---|---|
K11584 | PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_007230735.3 | True | 4235 | mRNA | 0.43 | 16 | 43295459 | 43326031 |
XM_007230736.3 | False | 4119 | mRNA | 0.43 | 15 | 43295459 | 43326032 |
XM_007230737.3 | False | 4164 | mRNA | 0.43 | 14 | 43295459 | 43317038 |
XM_007230738.3 | False | 4047 | mRNA | 0.43 | 13 | 43295459 | 43317038 |
XM_022686354.1 | False | 4139 | mRNA | 0.42 | 16 | 43295459 | 43324676 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
slc25a29 | slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 | coding | downstream | 106100 | 43179427 ~ 43189359 (-) |
LOC103042238 | hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003 | coding | downstream | 232291 | 43051888 ~ 43063168 (-) |
c3h2orf70 | NA | coding | downstream | 396976 | 42895773 ~ 42898483 (-) |
fndc1 | fndc1,LOC107549078 | coding | downstream | 404387 | 42826068 ~ 42891072 (-) |
wtap | wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 | coding | downstream | 535469 | 42752009 ~ 42759990 (-) |
LOC103024139 | LOC107100300,LOC107378075,LOC108257811 | coding | upstream | 2575 | 43328607 ~ 43336669 (-) |
LOC103024454 | hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 | coding | upstream | 10815 | 43336847 ~ 43341516 (-) |
mgat2 | mgat2,LOC107728126,LOC107564584,LOC107704380 | coding | upstream | 24861 | 43350893 ~ 43356000 (-) |
LOC103027377 | LOC108416125,LOC101075333,LOC106560396 | coding | upstream | 273625 | 43599657 ~ 43664802 (-) |
LOC103034775 | NA | coding | upstream | 340815 | 43666847 ~ 43672990 (-) |
G25802 | myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 | non-coding | downstream | 116240 | 43172973 ~ 43179219 (-) |
G25797 | LOC108411385 | non-coding | downstream | 124245 | 43160421 ~ 43171214 (-) |
G25776 | NA | non-coding | downstream | 160173 | 43119814 ~ 43135286 (-) |
G25774 | NA | non-coding | downstream | 163707 | 43124819 ~ 43131752 (-) |
G25777 | NA | non-coding | downstream | 168126 | 43061698 ~ 43127333 (-) |
G25874 | NA | non-coding | upstream | 34456 | 43360488 ~ 43363090 (-) |
G25902 | NA | non-coding | upstream | 135637 | 43461669 ~ 43462154 (-) |
G25903 | NA | non-coding | upstream | 158057 | 43484089 ~ 43484368 (-) |
G25986 | palld,LOC107755258,LOC106560254 | non-coding | upstream | 540344 | 43866376 ~ 43885038 (-) |
G26009 | NA | non-coding | upstream | 595844 | 43921876 ~ 43924352 (-) |
G25785 | NA | other | downstream | 184058 | 43098822 ~ 43111401 (-) |
G25678 | NA | other | downstream | 577070 | 42717666 ~ 42718389 (-) |
LOC111196586 | LOC108262118 | other | downstream | 1415035 | 41869024 ~ 41880424 (-) |
LOC111196508 | NA | other | downstream | 1429615 | 41856095 ~ 41865844 (-) |
arhgap11a | NA | other | downstream | 1852965 | 41436041 ~ 41442494 (-) |
LOC103027084 | LOC108416115,LOC103358919 | other | upstream | 169387 | 43495419 ~ 43517157 (-) |
G25967 | mcm3l,LOC108416133,LOC108258154,LOC107697457 | other | upstream | 348993 | 43675025 ~ 43678862 (-) |
cbr4 | cbr4,LOC107597475,LOC107665353 | other | upstream | 564597 | 43890629 ~ 43899760 (-) |
fkbp1b | fkbp1b | other | upstream | 1443232 | 44769264 ~ 44799505 (-) |
ubxn2a | ubxn2a,LOC107603085,LOC107750080,LOC107697178 | other | upstream | 1530067 | 44856099 ~ 44870690 (-) |