rd3l (rd3l)


Basic Information

Item Value
gene id rd3l
gene name rd3l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60485903 ~ 60490965 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230914.2
ATGGAGCCACAATATCGTGGTCATCACCCTCTCACTCCAACAAGCCTGTCCATACCATTCACTGCATGGATGAAGTGGCCCCATGTGGAAGGTGAACAGGGGCCAGGCTGTGTGGCCCCTGTGGGCCCTGGgcgtgtgctgctgagggaGCTGCTCTGGCAGTTGGAGCAGAGAGAGCAGCAGGTCCTGGAGGAGGAGTTGCAACACCGCCTCTCCCGGAGCAGCAGTATGGGATACCGACGCCCAATGGGGCGGCCTAGCTTACTGGCCCTGATGCCTGCCTCAGAGTGCAGACAGCTGGAGTGCCTCTGTGCTCGCATTCCTCCCTCACACACCGCCACTGTGCTCTCCAGGTTCCGGGATATTTTGGCTCACAACGATGTCCTGCCCTGGGAGCTTGTGTGCATCTTCAAGCAGGTGCTGCGGGACTTTCTAAGAAGGCAGGATGAGGCAGGGTACCGGCGTCCCTTCTCTCTGCCACCACCATTGCTACTCCCTGTTTCTCCTCCTGAAATGGAAACCAATGGGAGCACCCAACAGTCGAGGAAAGCATCTCCTGCCTCACCCTCACCTGAAGGACAAGAGAGGCACAGAGAGGAGATCCCGACCATCTCCAGCTATGTGGACCGGCATTTACGCAGCGCCTGCCCATATGCTGTCCAAAGAGACTGTCTGCCCTATTACCGAACACTGCCCGATGACTGTCCTGAAGCCTACAGCACTACCCTGTAAAGGTCAAAAATAGCTCAGAGTAACCCTACTGATCTCTGTGTCCTGTCTCCTTACAGAAACCTTCCTCAGACACAAACCcagaacagtaaaacacagagCATTCCAGTCTGGATCATTGTAAGCATGAGGTTTGTATTAGGAACACATTCAGAGCAGGGTCAGTTATGGCAAAAACAAGCACAACCTAGGCCAAAAATAACTCTGCTATAGGTACCACATTTAAAGCTGTCATGGCATTAGAAACGTTTGTGTCCTCAAACCCAGATTAGGATGAAGTGTGAATTCATGTCAGTTTATGGTATGTGGGCtgaataaacatatatacacagctctggaaaaaaaattaagagaccacttctgtttctaaatcagtttctct

Function

symbol description
rd3l Orthologous to human RD3L (RD3 like).

NR:

description
PREDICTED: protein RD3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230914.2 True 1111 mRNA 0.52 3 60485903 60490965

Neighbor

gene id symbol gene type direction distance location
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding upstream 23855 60395578 ~ 60462048 (+)
LOC111190190 NA coding upstream 42396 60430861 ~ 60443507 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding upstream 204013 60279839 ~ 60281890 (+)
LOC103035162 LOC108434989,LOC108258176 coding upstream 212614 60265837 ~ 60273289 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 394095 60061098 ~ 60091808 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding downstream 41777 60532742 ~ 60599366 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding downstream 212117 60703082 ~ 60793830 (+)
LOC103031412 NA coding downstream 503962 60994927 ~ 61163598 (+)
trnad-guc NA coding downstream 1202248 61693213 ~ 61693284 (+)
l3hypdh l3hypdh,LOC107684001 coding downstream 1202990 61693955 ~ 61704828 (+)
G29679 NA non-coding upstream 103647 60382041 ~ 60382256 (+)
G29663 NA non-coding upstream 129021 60356477 ~ 60356882 (+)
G29662 NA non-coding upstream 132773 60351318 ~ 60353130 (+)
G29641 NA non-coding upstream 197810 60287867 ~ 60288093 (+)
G29639 NA non-coding upstream 199960 60282585 ~ 60285943 (+)
G29772 NA non-coding downstream 199036 60690001 ~ 60690253 (+)
G29775 xrcc3 non-coding downstream 209380 60700345 ~ 60702123 (+)
G29812 NA non-coding downstream 336772 60827737 ~ 60827940 (+)
G29825 NA non-coding downstream 438157 60929122 ~ 60930577 (+)
G29916 jag2,jag2b,LOC106571712,LOC107718403 non-coding downstream 816254 61307219 ~ 61309843 (+)
nme6 nme6 other upstream 887571 59586709 ~ 59598332 (+)
atraid atraid other upstream 926141 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1257063 59221266 ~ 59228840 (+)
G29382 NA other upstream 1264867 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1373588 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 29377 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1435115 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2330778 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2435053 62926018 ~ 62931133 (+)
G30362 NA other downstream 2844769 63335734 ~ 63345693 (+)

Expression


Co-expression Network