xrcc3 (xrcc3)


Basic Information

Item Value
gene id xrcc3
gene name xrcc3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60697286 ~ 60702253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230925.3
gtttttgcgctgagaaaaaaaacatcaaatgccgtttttatttcatgtgttatttttattaatgataGTTTTCGTTCATGCGAGTAAACTTTACCTACCCGTGTAGGGACTCTTATTGTGTCGGGtttttttcatatgttttcCTAACCTGGAAACACACTACGCTGGAGTTTctctgatgtaaatgtatgaaaatCGCATTAATGTGGTGCACGCGGGGTTAAGCAGGTTAAGCGGACTGATCTAAACGCATTGTGTAAAGATGCGATGGACTTGGAACAGCTTGAGCTCAGTCCAAGAGTCAGGAATGCTCTGAGAAAGGCCTGTGTGAGATCGGTGAGGGAGGTGCTGAGTGTTTCTGCTCCGGAGCTGCAGCACAGACTCGCTCTCCTGTCTCTGAGGGAGGTGAAGGAGCTGCAtgctgctgccgccgctgccTGTAGGAGCTCACCACCCGTCACAGCTTTACAGTTGGCTCGTGGAGAATGTCCTTCCTTGGAACCCGGACACAGACTTTCGCTGGCCTGTCCTGTTTTGGATAATCTTTTGCGGGGTGGTCTTCCTCTGCGTGGAATAACAGAGCTAGCAGGTGAGAGTGCTGCTGGAAAAACCCAGTTTGCACTGCAGCTTTGCCTCTCTGTCCAGTATCCACAGGAACATGGGGGACTGGGATCAGGAGCTGTTTATATCTGCACTGAAGATTCTTTTCCCATTAAACGGCTGCGGCAACTCATTACCCAGCAGGCCCGACTCCGCCCAAATGTGCCACAGGCTCTGATCCGCAGCCTCCGCTTCAGTGACAATATCTACATCGAGCACACTGCAGACCTGgaAGCTCTGCAGGCGTGTGTGTCGCAGCGGGTGCCCATGTTACTGGAGAGAGGTTTGGTGCGTCTGGTGGTGGTGGACTCTGTTGCTGCCCTGTTCAGAACAGAGTTCCAAGCTGATGAAGCCATTGAGAGAGCACGCCACCTGCTGGCCTTTTCCAGCACCCTCCATCGCCTCAGCCATACGCATGCTGCACCTGTGTTCTGCATCAATCAGGTATCAGATGTTGTGGATGGTCCCAACCCAGGACGCTGTGATTATGGGCTGGTAGACAGTAAGGTGCAACCTGCTCTGGGTATTGCCTGGGCCAACCAGGTGATGGTGCGTCTCATGCTGTGGAGGCAGGAGGGCTGTTTAAGGTCAGGAGGTCGGACTAGCGCTCCCCGCAGACTGGAGGTGGTTTTTGCTCCACACCTACCCCGGGCCAGCTGCCTGTGTGGAGTATGGGAAGAAGGAGTCAGAGCAATTCCTGATGAAGACCTCGGTGAAGAGCTTCAAACCACTTCATGATGGCACTTCCAGTAGAGACTAATTTTTCAATTAGAGAATCTCTGGAGATAAAGGACTCAATCTACAAATTGACtgatttaaagcttttttttttaaccaagcacaatcatataaaatgtattatttctaTAAATGCTGTGTatttaataaacatgattttatATCCCTCTGCT
>XM_007230926.3
aatcgtttttgcgctgagaaaaaaaacatcaaatgccgtttttatttcatgtgttatttttattaatgataGTTTTCGTTCATGCGAGTAAACTTTACCTACCCGTGTAGGGACTCTTATTGTGTCGGGtttttttcatatgttttcCTAACCTGGAAACACACTACGCTGGAGTTTctctgatgtaaatgtatgaaaatCGCATTAATGTGGTGCACGCGGGGTTAAGCAGGTTAAGCGGACTGATCTAAACGCATTGTGTAAAGATGCGATGGACTTGGAACAGCTTGAGCTCAGTCCAAGAGTCAGGAATGCTCTGAGAAAGGCCTGTGTGAGATCGGTGAGGGAGGTGCTGAGTGTTTCTGCTCCGGAGCTGCAGCACAGACTCGCTCTCCTGTCTCTGAGGGAGGTGAAGGAGCTGCAtgctgctgccgccgctgccTGTAGGAGCTCACCACCCGTCACAGCTTTACAGTTGGCTCGTGGAGAATGTCCTTCCTTGGAACCCGGACACAGACTTTCGCTGGCCTGTCCTGTTTTGGATAATCTTTTGCGGGGTGGTCTTCCTCTGCGTGGAATAACAGAGCTAGCAGGAGCTGTTTATATCTGCACTGAAGATTCTTTTCCCATTAAACGGCTGCGGCAACTCATTACCCAGCAGGCCCGACTCCGCCCAAATGTGCCACAGGCTCTGATCCGCAGCCTCCGCTTCAGTGACAATATCTACATCGAGCACACTGCAGACCTGgaAGCTCTGCAGGCGTGTGTGTCGCAGCGGGTGCCCATGTTACTGGAGAGAGGTTTGGTGCGTCTGGTGGTGGTGGACTCTGTTGCTGCCCTGTTCAGAACAGAGTTCCAAGCTGATGAAGCCATTGAGAGAGCACGCCACCTGCTGGCCTTTTCCAGCACCCTCCATCGCCTCAGCCATACGCATGCTGCACCTGTGTTCTGCATCAATCAGGTATCAGATGTTGTGGATGGTCCCAACCCAGGACGCTGTGATTATGGGCTGGTAGACAGTAAGGTGCAACCTGCTCTGGGTATTGCCTGGGCCAACCAGGTGATGGTGCGTCTCATGCTGTGGAGGCAGGAGGGCTGTTTAAGGTCAGGAGGTCGGACTAGCGCTCCCCGCAGACTGGAGGTGGTTTTTGCTCCACACCTACCCCGGGCCAGCTGCCTGTGTGGAGTATGGGAAGAAGGAGTCAGAGCAATTCCTGATGAAGACCTCGGTGAAGAGCTTCAAACCACTTCATGATGGCACTTCCAGTAGAGACTAATTTTTCAATTAGAGAATCTCTGGAGATAAAGGACTCAATCTACAAATTGACtgatttaaagcttttttttttaaccaagcacaatcatataaaatgtattatttctaTAAATGCTGTGTatttaataaacatgattttatATCCCTCTGCT

Function

symbol description
xrcc3 Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to contribute to four-way junction DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Rad51C-XRCC3 complex. Predicted to be active in replication fork. Human ortholog(s) of this gene implicated in breast cancer; familial melanoma; and pancreatic cancer. Orthologous to human XRCC3 (X-ray repair cross complementing 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10880 XRCC3; DNA-repair protein XRCC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230925.3 True 1511 mRNA 0.49 7 60697286 60702249
XM_007230926.3 False 1428 mRNA 0.49 7 60697286 60702253

Neighbor

gene id symbol gene type direction distance location
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding downstream 90129 60602410 ~ 60607157 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding downstream 385640 60307935 ~ 60311646 (-)
LOC103034514 LOC108434990,LOC108258108 coding downstream 478230 60184694 ~ 60219056 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding downstream 519932 60163340 ~ 60177354 (-)
LOC103033561 NA coding downstream 551366 60128047 ~ 60145920 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding upstream 28949 60731202 ~ 60735851 (-)
LOC103028984 LOC108412120 coding upstream 467249 61169502 ~ 61201223 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding upstream 667742 61369995 ~ 61430279 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding upstream 1005438 61707691 ~ 61815586 (-)
LOC103031530 NA coding upstream 1294100 61996353 ~ 62008626 (-)
G29741 NA non-coding downstream 171902 60520240 ~ 60525384 (-)
G29716 NA non-coding downstream 177489 60463976 ~ 60519797 (-)
G29724 NA non-coding downstream 196094 60498211 ~ 60501192 (-)
G29707 NA non-coding downstream 233940 60460988 ~ 60463346 (-)
G29702 NA non-coding downstream 301040 60395649 ~ 60396246 (-)
G29803 NA non-coding upstream 90523 60792776 ~ 60793791 (-)
G29819 NA non-coding upstream 190443 60892696 ~ 60893051 (-)
G29930 NA non-coding upstream 604850 61307103 ~ 61328118 (-)
G29937 NA non-coding upstream 665022 61367275 ~ 61383834 (-)
G30001 NA non-coding upstream 1206450 61908703 ~ 61917427 (-)
LOC111191938 NA other downstream 327672 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 332542 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 535220 60149397 ~ 60162066 (-)
snx17 snx17 other downstream 1144376 59506926 ~ 59552910 (-)
G29478 NA other downstream 1258988 59437600 ~ 59438298 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 590623 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1129588 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 2434698 63136951 ~ 63288108 (-)
G30376 NA other upstream 2627791 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 2731539 63433792 ~ 63485021 (-)

Expression


Co-expression Network