btbd6 (btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384)


Basic Information

Item Value
gene id btbd6
gene name btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60731202 ~ 60735851 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230927.3
acaggagcagcagcagcagtatagagagagatagagagaggtgaTGCTGCTGGTGATGGTAagcacagatacagatcacatGCCACTGCTCATTTACGCTCATCTAGGCTAGTCGTTTCTCGTCTGAGTCAGTCGTTTTTCTGGTTCTCTGGCGGTTTGCAGTGGATTTGGGACTCGAGGGGAGATGCTTTCTCCGTGATTGAGGATGCGatgagaaagaggaaaaagtaCGGGCGTTGGAATAGTTCCGCTGGACGGACGCGTCTGTGTTGTTCCctgtagagagagagcagcGTTATGTGATCGCGTAGGTCGTGAGCTCGTATTTGAAAACACGGGACCTGTCCGCTTAGAAGAGAGCGCCTCCCTCAGTGCACCTGCCGTTCTCTCAGATCTCCTACACACTGGTGGATTTATTTGCTGATGCCAACACCTCCAGATTGCCTGTATGGCCGGATCATGAAGTTTCTGACATTTTTCCTTCTGCTTCCAGAGACCCTAAAAAGGACTAGAAAGAGTGGGAAGGGACCCGGCAAGCTGCCAGCATGCTATGAGATTGTGACTTTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCTAGCATAAATACTAATCTGCCGAACAGCAACAGTCCAGCGGTTACTGCCAccagtaaaaagaacattgttcaGGTGACCCAAACAGTGACCACCCCGACGTCCAACACCACTCAGCAGAACATCAACAATAACAACGTCGAGACTGCCACCTGGCAGGCGACTCATCCGACACTGCGAGAAAGgaATGCTTTGATGTTCAATAACGAACTAATGGCTGATGTTCATTTCATTGTGGGTCCCCCTGGCGAGTCCCAAAAAGTCCCAGCCCATAAGTATGTGTTGGCAGTGGGGAGTTCAGTGTTTGGTGCCATGTTTTACGGGGATCTTGCTGAAGGCGAATCTGAGATTCATATTCCTGACGTGGAGCCTGCTGCTTTTTTAATCCTATTAAAATATCTGTACAGTGACGAGATTGAACTGGAGGCGGACACGGTGCTGGCCACTCTGTACGCCGCCAAAAAGTATATAGTGCCTGCCTTGGCCAAGGCCTGTGTCACCTTCCTGGAGACCAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGTCGGCTCTTTGAAGAGCCTGAGCTCACTCAGCGTTGCTGGGAGGTTATCGATGCTCAGGCCGAGCTGGCTCTGCGTTCTGAAGGCTTCTGTGAAATTGACCTACAGACCTTGGAGATCATCCTGAAACGAGAGACTCTAAACACTCGTGAGGCTGTAGTGTTTCAGGCCGTCTTGGAATGGGCTGTGGCCGAATGCAAAAGGCAAGGACTGGGACCAACGGCTCGCAACAAGAGGGCCGTGCTGGGCAAAGCCCTCTATCTGGTGCGAATTCCTACCATGACGCTGGAGGAGTTCGCAGATGGAGCAGCGCAGTCGGATGTGTTGACACTGGAAGAGACTCATGACGTTTTTCTGTGGTATACAGCAGCCACTAAGCCCAAACTGGACTTCCCACTGACTAAAAGGAAGGGACTGACGCCGCAGCGTTGCCACCGCTTTCAGTCCTCTGCCTATCGCAGCAACCAGTGGCGCTACCGTGGCCGCTGTGACAGCATCCAGTTCGCTGTGGACAAGCGGATCTTCATTGCTGGACTGGGCCTGTATGGCTCTAGTGGCGGGAAGGCTGAGTACAGCGTCAAAATCGAACTGAAGCGTCAAGGGGTGATTCTGGCCCAGAACCTGACTAAGTTCATTTCGGACGGTTCGAGCAGCACTTTCTCTGTGTGGTTTGAGCACCCGGTTCAGGTGGAGCAGGATGCCTTCTACACAGTTAGTGCCGTGTTGGATGGGAATGAGCTTAGCTACTTTGGACAAGAGGGAATGACAGAAGTGCAGTGTGGGAAGGTGACCTTTCAGTTCCAGTGCTCTTCGGACAGCACTAATGGCACTGGTGTGCAGGGCGGTCAGATCCCAGAGCTGGTCTTCTATGCCTGAAAGGTGTGAGGACAGCAGTACTGAAGTGCATTCCACTCAGCTGGATTTGGATGCAATGAACACATGGGAAAGTACAGGGTCCTGAGAGGCTCTTGCCTTCTTTTCAATGTAGCAGTGGAGGACAATTGAATGGCAAAGCCTATCTACACTAAAACAGACTCTTCTGACAAAGTATGAGTGAAGGAATGCTCCTCTgctttatttattgaaaaaaaaaagtatatttgatttaattattgATGCTGCGGCATGCAgatctatatataaataaatatatatataaacaaagaaatagatGTATTGCACTCCTGGTGGCTCACTACCGCTAGCGCGTTGTGTTTTGTACATAACCTGAGGCTAATTTGTTTACAGCTTGATGCTGACTGACAAATGAAATGTCTTGTATTAGTGTGCAGCTTACTAAACTGCAGATCATAAAAGTTTTGTGACTCAAACTG
>XM_007230930.3
acaggagcagcagcagcagtatagagagagatagagagaggtgaTGCTGCTGGTGATGGTAagcacagatacagatcacatGCCACTGCTCATTTACGCTCATCTAGGCTAGTCGTTTCTCGTCTGAGTCAGTCGTTTTTCTGGTTCTCTGGCGGTTTGCAGTGGATTTGGGACTCGAGGGGAGATGCTTTCTCCGTGATTGAGGATGCGatgagaaagaggaaaaagtaCGGGCGTTGGAATAGTTCCGCTGGACGGACGCGTCTGTGTTGTTCCctgtagagagagagcagcGTTATGTGATCGCGTAGGTCGTGAGCTCGTATTTGAAAACACGGGACCTGTCCGCTTAGAAGAGAGCGCCTCCCTCAGTGCACCTGCCGTTCTCTCAGATCTCCTACACACTGAGACCCTAAAAAGGACTAGAAAGAGTGGGAAGGGACCCGGCAAGCTGCCAGCATGCTATGAGATTGTGACTTTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCTAGCATAAATACTAATCTGCCGAACAGCAACAGTCCAGCGGTTACTGCCAccagtaaaaagaacattgttcaGGTGACCCAAACAGTGACCACCCCGACGTCCAACACCACTCAGCAGAACATCAACAATAACAACGTCGAGACTGCCACCTGGCAGGCGACTCATCCGACACTGCGAGAAAGgaATGCTTTGATGTTCAATAACGAACTAATGGCTGATGTTCATTTCATTGTGGGTCCCCCTGGCGAGTCCCAAAAAGTCCCAGCCCATAAGTATGTGTTGGCAGTGGGGAGTTCAGTGTTTGGTGCCATGTTTTACGGGGATCTTGCTGAAGGCGAATCTGAGATTCATATTCCTGACGTGGAGCCTGCTGCTTTTTTAATCCTATTAAAATATCTGTACAGTGACGAGATTGAACTGGAGGCGGACACGGTGCTGGCCACTCTGTACGCCGCCAAAAAGTATATAGTGCCTGCCTTGGCCAAGGCCTGTGTCACCTTCCTGGAGACCAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGTCGGCTCTTTGAAGAGCCTGAGCTCACTCAGCGTTGCTGGGAGGTTATCGATGCTCAGGCCGAGCTGGCTCTGCGTTCTGAAGGCTTCTGTGAAATTGACCTACAGACCTTGGAGATCATCCTGAAACGAGAGACTCTAAACACTCGTGAGGCTGTAGTGTTTCAGGCCGTCTTGGAATGGGCTGTGGCCGAATGCAAAAGGCAAGGACTGGGACCAACGGCTCGCAACAAGAGGGCCGTGCTGGGCAAAGCCCTCTATCTGGTGCGAATTCCTACCATGACGCTGGAGGAGTTCGCAGATGGAGCAGCGCAGTCGGATGTGTTGACACTGGAAGAGACTCATGACGTTTTTCTGTGGTATACAGCAGCCACTAAGCCCAAACTGGACTTCCCACTGACTAAAAGGAAGGGACTGACGCCGCAGCGTTGCCACCGCTTTCAGTCCTCTGCCTATCGCAGCAACCAGTGGCGCTACCGTGGCCGCTGTGACAGCATCCAGTTCGCTGTGGACAAGCGGATCTTCATTGCTGGACTGGGCCTGTATGGCTCTAGTGGCGGGAAGGCTGAGTACAGCGTCAAAATCGAACTGAAGCGTCAAGGGGTGATTCTGGCCCAGAACCTGACTAAGTTCATTTCGGACGGTTCGAGCAGCACTTTCTCTGTGTGGTTTGAGCACCCGGTTCAGGTGGAGCAGGATGCCTTCTACACAGTTAGTGCCGTGTTGGATGGGAATGAGCTTAGCTACTTTGGACAAGAGGGAATGACAGAAGTGCAGTGTGGGAAGGTGACCTTTCAGTTCCAGTGCTCTTCGGACAGCACTAATGGCACTGGTGTGCAGGGCGGTCAGATCCCAGAGCTGGTCTTCTATGCCTGAAAGGTGTGAGGACAGCAGTACTGAAGTGCATTCCACTCAGCTGGATTTGGATGCAATGAACACATGGGAAAGTACAGGGTCCTGAGAGGCTCTTGCCTTCTTTTCAATGTAGCAGTGGAGGACAATTGAATGGCAAAGCCTATCTACACTAAAACAGACTCTTCTGACAAAGTATGAGTGAAGGAATGCTCCTCTgctttatttattgaaaaaaaaaagtatatttgatttaattattgATGCTGCGGCATGCAgatctatatataaataaatatatatataaacaaagaaatagatGTATTGCACTCCTGGTGGCTCACTACCGCTAGCGCGTTGTGTTTTGTACATAACCTGAGGCTAATTTGTTTACAGCTTGATGCTGACTGACAAATGAAATGTCTTGTATTAGTGTGCAGCTTACTAAACTGCAGATCATAAAAGTTTTGTGACTCAAACTG
>XM_007230931.3
GCAAAATACGGTTGTCTAGGTTTGTATGATGCTTAAGCCTCTTAACCCAGTCCGTTATCCGTTGATAAACCCCTCCAAATGATCCATTTTGTAACGCCGGGGCCCTCTGTTGGAAAGCCGGGAGAACGAGCTGGAAGCAGGACGTAAGCCCAACCCCCCTCTCCCAGAGCAGGCTCGGGATTTAACATGGCTCCTGGCTGCGAGCGAACGAGCGTCCGCGGACCAGACCTGACTGTGTTTTTCCGCTGAGCGGGGCTCCCTCTTTTCCCCTCTTCACGAAAAGAGACCCTAAAAAGGACTAGAAAGAGTGGGAAGGGACCCGGCAAGCTGCCAGCATGCTATGAGATTGTGACTTTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCTAGCATAAATACTAATCTGCCGAACAGCAACAGTCCAGCGGTTACTGCCAccagtaaaaagaacattgttcaGGTGACCCAAACAGTGACCACCCCGACGTCCAACACCACTCAGCAGAACATCAACAATAACAACGTCGAGACTGCCACCTGGCAGGCGACTCATCCGACACTGCGAGAAAGgaATGCTTTGATGTTCAATAACGAACTAATGGCTGATGTTCATTTCATTGTGGGTCCCCCTGGCGAGTCCCAAAAAGTCCCAGCCCATAAGTATGTGTTGGCAGTGGGGAGTTCAGTGTTTGGTGCCATGTTTTACGGGGATCTTGCTGAAGGCGAATCTGAGATTCATATTCCTGACGTGGAGCCTGCTGCTTTTTTAATCCTATTAAAATATCTGTACAGTGACGAGATTGAACTGGAGGCGGACACGGTGCTGGCCACTCTGTACGCCGCCAAAAAGTATATAGTGCCTGCCTTGGCCAAGGCCTGTGTCACCTTCCTGGAGACCAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGTCGGCTCTTTGAAGAGCCTGAGCTCACTCAGCGTTGCTGGGAGGTTATCGATGCTCAGGCCGAGCTGGCTCTGCGTTCTGAAGGCTTCTGTGAAATTGACCTACAGACCTTGGAGATCATCCTGAAACGAGAGACTCTAAACACTCGTGAGGCTGTAGTGTTTCAGGCCGTCTTGGAATGGGCTGTGGCCGAATGCAAAAGGCAAGGACTGGGACCAACGGCTCGCAACAAGAGGGCCGTGCTGGGCAAAGCCCTCTATCTGGTGCGAATTCCTACCATGACGCTGGAGGAGTTCGCAGATGGAGCAGCGCAGTCGGATGTGTTGACACTGGAAGAGACTCATGACGTTTTTCTGTGGTATACAGCAGCCACTAAGCCCAAACTGGACTTCCCACTGACTAAAAGGAAGGGACTGACGCCGCAGCGTTGCCACCGCTTTCAGTCCTCTGCCTATCGCAGCAACCAGTGGCGCTACCGTGGCCGCTGTGACAGCATCCAGTTCGCTGTGGACAAGCGGATCTTCATTGCTGGACTGGGCCTGTATGGCTCTAGTGGCGGGAAGGCTGAGTACAGCGTCAAAATCGAACTGAAGCGTCAAGGGGTGATTCTGGCCCAGAACCTGACTAAGTTCATTTCGGACGGTTCGAGCAGCACTTTCTCTGTGTGGTTTGAGCACCCGGTTCAGGTGGAGCAGGATGCCTTCTACACAGTTAGTGCCGTGTTGGATGGGAATGAGCTTAGCTACTTTGGACAAGAGGGAATGACAGAAGTGCAGTGTGGGAAGGTGACCTTTCAGTTCCAGTGCTCTTCGGACAGCACTAATGGCACTGGTGTGCAGGGCGGTCAGATCCCAGAGCTGGTCTTCTATGCCTGAAAGGTGTGAGGACAGCAGTACTGAAGTGCATTCCACTCAGCTGGATTTGGATGCAATGAACACATGGGAAAGTACAGGGTCCTGAGAGGCTCTTGCCTTCTTTTCAATGTAGCAGTGGAGGACAATTGAATGGCAAAGCCTATCTACACTAAAACAGACTCTTCTGACAAAGTATGAGTGAAGGAATGCTCCTCTgctttatttattgaaaaaaaaaagtatatttgatttaattattgATGCTGCGGCATGCAgatctatatataaataaatatatatataaacaaagaaatagatGTATTGCACTCCTGGTGGCTCACTACCGCTAGCGCGTTGTGTTTTGTACATAACCTGAGGCTAATTTGTTTACAGCTTGATGCTGACTGACAAATGAAATGTCTTGTATTAGTGTGCAGCTTACTAAACTGCAGATCATAAAAGTTTTGTGACTCAAACTG

Function

symbol description
btbd6b Predicted to be involved in neurogenesis. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including myotome; nervous system; neural crest; neural tube; and otic vesicle. Orthologous to human BTBD6 (BTB domain containing 6).
btbd6 Predicted to be involved in neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in cytosol.

NR:

description
PREDICTED: BTB/POZ domain-containing protein 6 isoform X1

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0000932 P-body cellular_component

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230927.3 True 2489 mRNA 0.50 4 60731202 60734035
XM_007230930.3 False 2403 mRNA 0.50 5 60731202 60734035
XM_007230931.3 False 2279 mRNA 0.50 5 60731202 60735851

Neighbor

gene id symbol gene type direction distance location
xrcc3 xrcc3 coding downstream 28949 60697286 ~ 60702253 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding downstream 124045 60602410 ~ 60607157 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding downstream 419556 60307935 ~ 60311646 (-)
LOC103034514 LOC108434990,LOC108258108 coding downstream 512146 60184694 ~ 60219056 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding downstream 553848 60163340 ~ 60177354 (-)
LOC103028984 LOC108412120 coding upstream 433651 61169502 ~ 61201223 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding upstream 634144 61369995 ~ 61430279 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding upstream 971840 61707691 ~ 61815586 (-)
LOC103031530 NA coding upstream 1260502 61996353 ~ 62008626 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding upstream 1273956 62009807 ~ 62039839 (-)
G29741 NA non-coding downstream 205818 60520240 ~ 60525384 (-)
G29716 NA non-coding downstream 211405 60463976 ~ 60519797 (-)
G29724 NA non-coding downstream 230010 60498211 ~ 60501192 (-)
G29707 NA non-coding downstream 267856 60460988 ~ 60463346 (-)
G29702 NA non-coding downstream 334956 60395649 ~ 60396246 (-)
G29803 NA non-coding upstream 56925 60792776 ~ 60793791 (-)
G29819 NA non-coding upstream 156845 60892696 ~ 60893051 (-)
G29930 NA non-coding upstream 571252 61307103 ~ 61328118 (-)
G29937 NA non-coding upstream 631424 61367275 ~ 61383834 (-)
G30001 NA non-coding upstream 1172852 61908703 ~ 61917427 (-)
LOC111191938 NA other downstream 361588 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 366458 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 569136 60149397 ~ 60162066 (-)
snx17 snx17 other downstream 1178292 59506926 ~ 59552910 (-)
G29478 NA other downstream 1292904 59437600 ~ 59438298 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 557025 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1095990 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 2401100 63136951 ~ 63288108 (-)
G30376 NA other upstream 2594193 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 2697941 63433792 ~ 63485021 (-)

Expression


Co-expression Network