LOC103032052 (rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319)


Basic Information

Item Value
gene id LOC103032052
gene name rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56486500 ~ 56635493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231518.3
GAGGAacagaggagtggaggagtggagaaCAGGAGGAGCAGGGGAGCTGACAGGACTTTGTTGCTAAGCCGGAGTGCGTGGAGGGGAAGCGGGGGGGAGCGATGGCTCAGGCCTCTCAGGAGCAGGGGGCAGTGGGGACCGCCGACCCCGAGGAGGACTCCCCGAACATGATCGTCTACAGGAAGATTGAGGATATAGTGACTCGAATCCAGGATGAGACTGAAGGAGTGCCAATCAGAACAGTCAAGAGCTTCATGTCTAAGATCCCTAGTGTGGTCACAGGGACTGACATTGTTCAGTGGCTGATGAAGAACCTCTCCATTGAAGATCCAGCGGAGGCCTTACACATCGGAAGCCTGATTGCTGCTCAGGGATACATCTTCCCCATCTCTGATCATGTTCTCACCCTAAAGGATGATGGGACATTCTACCGCTTTCAGgctCCATACTTCTGGCCATCTAATTGCTGGGAGCCCGAGAACACGGACTATGCCATCTATCTGTGCAAGCGGACCATGCAGAACAAGACACGGCTGGAGCTAGCAGACTATGAAGCGGAAAACCTGGCCAGGCTGCAGAGAGCTTTCGCCAGAAAGTGGGAGTTCATCTTCATGCAGGCTGAGGCTCAGGTCAAGATTGATAGGAAAAAGGACAAGACCGAGAGGAAGATTCTCGACAGCCAAGAAAGAGCCTTCTGGGATGTCCACCGACCAGTGCCAGGCTGCGTCAACACCACAGAAATGGACATCAGGAAGTGTCGACGCATGAAGAACCCCCAAAGAGTCAAGAagtctgtgtATGGTGTAGCAGAAGACACACAGACGCAGAGTCCTGTACACACACAATCGCAACAGAGCAGGAAGGACACCAAAGAGGATGTAGAGAAGGAGATTCTGTTCTTGAACACTCAGCTGGACAGACACTGCATGAAAATGTCCAAAGTAGCAGAAACGCTAATGAGCTACACTGAGCAGTATCTGGAGTATGACCCGTTTGTGTGCACCCCCGAGCCGTCCAACCCCTGGGTCGGTGATGACTGCACTTTCTGGGAGCTGGAGGCCAGTAAAGACCCCAGCCAGCAGCGGGTTAGAAAATGGGGATTTTCACTGGAAGAGGCTCTGAAAGATCCAGTGGGCCAAGATCAGTTCCTCAAGTTTCTAGAATCAGAGTTCAGCTCAGAAAACCTGCGGTTCTGGTTGGCAGTGCAGGATTTGAAGCGACGCCCCCTGCAGGATGTTCCAGCCCGCGCTCAGGAGATCTGGCAGGAGTTTCTGGCTGAAGGAGCTCCCAGTTCCATCAACCTGGACTCACACAGTTTTGAGCGCACCAGCCAGAATCTGAAAGACCCAGGACGCTACAGCTTTGAGGATGCCCAGGACCACATCTACAAGCTGATGAAGAGCGATAGCTACACCCGCTTCTTACGCTCCAGTGCGTATCAGGACCTCCTGCTGGCCAGAAAAAAGCCTGAAAGTGAACAAGGCCGTCGGACGTCTCTGGAGAAATTCACCCGCAGTGTGGGTAAATCTCTGACGGGGAAGCGTCTGACAGGCCTCATGCAGTCGTCCTGACGAGGCCTGGGCCTGGACTAGCCTGACCAAACCCAGAGGAGCTGCGATCTGCTGGTTTGAGAATAGTTTGACTGTGGTCATCAACCCATCCAACATTAGGACCTACTGCTAGCTCTACTACTCTGACATCGCGGCTATGGACTCTAGATGGCATGCAATAAGTCAACAACTTTACAAAACCTTTACAAAACAGGGACAGAGTCGTCTGTATTTAACCAATTATATACAACCATACAACCTTCAATCAACTACAATGACTGCACATATGAATGTCAGATTTTTACTTCCAGGATCACCTTGCGTTGATTTGATACTTCTTACCAGCAGCTGAGAAGCAGATCGGACTCTCGCTGCTTTGATTGCCATTTTAATAGCCTCTACTCCAGTTCATCCACTTTTCCAGGCTGGAGACATTAAGAGCAGTGACGTGCTGAGACAGAGTGTGAGTTGACGGTGGTGTGAGCAGGTGGAGGAGAGGGACGCGTGCCTTTTTGGCTGCAGAACAACATTCCAAAGGAGAGAAAACAAAAGTAGCAAGGGCTTCTTGTCTCGGTGTACTCTTGGCAAGGTTTGCACAGTTTTTGATATTACCATAATGTGTTAAAGTGGAGAGAAGTGTTAATGGATGCAGCGCAACCTGGATCGGAATTGGAGaaacttttcttcttcttctttatctttatcttcatCTCCTCAGTTCATTGAAATAATGTGCAATGTTGGAGCGGGTGCTGTTTCACAACACAAATACCTGAGCAGAGAGGTGTCACAGCAGAGAGCAGGGAGAATACAGATGGATGTGACTGCGACTAGGATggtgcactgtaaaaaatgatatCTTGGCAAGTAAACTTTGTAAATAGTAAACCTAGTCTAAATAACTCATATTTGCAATATTTCTGTTCTAAATCTCATAACAACATTGTAAGATTATTGTCTTAtattataaaagagtttataTTTTGAACATGCTGTCCTACTGCCAGATATGCCTTATTTCTTCAAAAATCCAAGACAATGGAGGCATTACTGTAAGTTTCTAAAGAAGAGCAAGTATCTTTTAATGGAATGAGAGTTTTCAGATAAAAATACTTTAGTCACAAACAAGCACCTACAAgaatgttaataatgataaatggGGAAAACAGACAGTCTTGGTTGGAAACAAGCAGTTCTTCTGTTTTGAAGCAGGACAGAATGCTTCATTTGAGTCAATACATGAATCAAAGGGCAATTGATTCATTAAACAGTGACTCTCTGAGCTGTCTGactcaaaacacaaacactgacaAAGCCAATTGCTTTATTAGGGTTTAAGTAAATGTTATCTGACTAGATGTCAAAGACTTTTAACATGGTCACAACAGCCCTGTAAtgcacattattaaaatataatgcgCAACACTTGAAATATGCAGGATTCTGCATCACTTTGCTCAGACCACTTCATTGGACATGGCAGACTCCATAATAATACTAAAGAAAGTTCTTCAGCTTTTATTATTGAAAATTACAACAATTTCTAAGAATTCTCTCTTGTATTTGAGGAGCCACACAAAGTGCAAACTATTAAGGCATTCAAATGTTTCTTGTTGGCTTTCCAAGATATCATTTTTATGCAGTgatattagaatattagaatatgtatattagaatagcacaaagaccaaacaaatgagaaaatgaCATTTCTGACATCTgcatatgtatttgtttttatacaaaGCATCCTAGCTATGATCTAAAAACAGAAATCTACCTAAACCTAATATAGAACTATATATGTGTGTCAAATCCACAGATGTAGCTGGTCCATGTTAAATGTATTCATCTAGCTTGCCTGcccaaatgaaaatgtaaatatagtcTGAATGTAAAAGATGTATGCTTCAAGAGTAGTGTTACAAAGGTGAGATAAACACACCGTCTATTATATTACACCCCCCAAAGATGGTCTGCACAAATATAGGACCGCTTATAGTGAAGGGCCGCGTCCAGGCCAGCGGACTTTTAGGATTATTCAGCGCTGCCTCATATAATCTGCTGGACCTGGACTGTTTTAGCCTAATATTGCTGCCACTTGACAGAAGTTGTGTATCACTGCCAGACATGCATATATATAGAGGACAAGCAGCGGAAGCCCTCATTGGTCAATACTCTGTTCACTAACTGTCTGTAAGCTGTTGGTTGAGAGGCGCTGTGGAACACGTTTCCAGCAAGAACTGCTTTGTGGACTCGTAACAGTGCATTCAGACTGAAACGGTGGAGACAGTGCGTacgtgtgtatgtttgtatgtatacaTATAGCAGCAGCTCTGCCTGTAGAGAATGCTGAGTAGAAGACATTTGAGAGTGAGTATAATTAGAGGCACAAGTGCTGCAACGAAGCACAAAACTATGCATGGGATATTTCTAAAGGATATTTCTTTACAGCTTTTAGTTTTttcaaagattaaaaaaaaaaagagtattagTGGAACACAGTGATGAATAGAAAGGGCGTTATGTCCAGAGTCAACCAATAAACATTCAGTATCCAT

Function

symbol description
rgs6 Predicted to enable GTPase activator activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Is expressed in nervous system and trigeminal placode. Orthologous to human RGS6 (regulator of G protein signaling 6).

NR:

description
PREDICTED: regulator of G-protein signaling 6-like isoform X2

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231518.3 True 4111 mRNA 0.44 18 56486500 56635493

Neighbor

gene id symbol gene type direction distance location
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding upstream 212172 56261636 ~ 56274328 (+)
susd6 susd6 coding upstream 259471 56192379 ~ 56227029 (+)
LOC103042812 zbtb2,zbtb2b,LOC103042812,LOC108424498 coding upstream 537550 55936150 ~ 55948950 (+)
LOC103034817 LOC108424415 coding upstream 597824 55666605 ~ 55888676 (+)
nrbp1 nrbp1,LOC107659221,LOC107737320,LOC107665360,LOC103372645 coding upstream 871025 55599802 ~ 55615475 (+)
pigh pigh coding downstream 88887 56724380 ~ 56731338 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding downstream 124213 56759706 ~ 56765799 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding downstream 131776 56767269 ~ 56819436 (+)
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding downstream 579851 57215344 ~ 57284784 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding downstream 770258 57405751 ~ 57407393 (+)
G28654 NA non-coding upstream 171744 56314038 ~ 56314756 (+)
G28637 NA non-coding upstream 258640 56214451 ~ 56227860 (+)
G28633 NA non-coding upstream 296217 56190067 ~ 56190283 (+)
G28632 NA non-coding upstream 296665 56189606 ~ 56189835 (+)
G28631 NA non-coding upstream 297031 56189253 ~ 56189469 (+)
G28776 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 non-coding downstream 185097 56820590 ~ 56823036 (+)
G28805 NA non-coding downstream 189195 56824688 ~ 56824999 (+)
G28807 NA non-coding downstream 194128 56829621 ~ 56830017 (+)
G28822 NA non-coding downstream 374984 57010477 ~ 57010719 (+)
G28833 NA non-coding downstream 483003 57118496 ~ 57118723 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 32566 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 174389 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 246771 56232739 ~ 56239729 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 1083170 55380604 ~ 55403330 (+)
G28072 NA other upstream 2107194 54378241 ~ 54379306 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 60351 56695844 ~ 56706092 (+)
G28865 NA other downstream 766432 57401925 ~ 57402392 (+)
LOC103042006 NA other downstream 1167398 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 1781901 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 2428980 59064473 ~ 59112315 (+)

Expression


Co-expression Network