G58388


Basic Information

Item Value
gene id G58388
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13996825 ~ 14004082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66495
GATGCTCCAGAAGGAAATACAATGCATTAAGAGCCGGGGGGTGAAAACTTTTGAACAGGATGAAAAAGTCCAAATTTTTCTTATTTTGTTTAAATATCAGTTTTTTTCATTTAGTACTGCTCTTCGGGAGCAACAGAAGATACTTTCATGTTTCCCAGAAGACAAATTAAGTAAATTTTTCCTTAATCTTCGAATTCAAAAAGTTTTCACCCCCTGGCTCTTAATTAATTGTGTTTCCTTCTGGAGCCTCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCAGTTGTCCTCAGTGTGAAAAGACGGATCTCAAAATTATACAGTAACTGCTGGAAAGGGTACAAATTTGCAAAAGATGCTGGAAAACTGAAGAATCCGCAGGACCTGGAGGATTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGACCAAACAAGGGACTCATGAACAACCATCACAAAACAAAAAAACAGTCGTAGATCATCCAGGTATTTTTTAATTTTGTATGATCTCTTATTTTGTCAAAATTTTTCACATTTTCACAGATTCTGCAAGGGGTTCACAAACTTTCAAGCGGCACTGTATAGATATGGTTAGCTACTTTTCGTTAGCAAATTGTAGTGTAGCTAACTACTATTTCGAAGGATGAACTTGACTGTATTTTAACTTAAACTCTAGCTGGACGAACTACAAGCTTTAAAGTAACTCCCCAAACACTGCATTGCAGAACTGCCTATTTTTTTATGTCATTTTTAATTATTACAAAAAATAACACATTTATTTTTCTCTATTCTCACAATCTCCTGAACCTTTTTCTTTTATCTCCTGGACTTCTGTTTTTGCCAGTGCTTCAGCTACGTCAGTAGTGTTTTTAGTGTGGGTCTTCACTCTAGTACACCATGCTCACCTATTTTCCCTGGACTGTGTGTGGTGCCCATTCCAACTGTCTGTCCCTTGTCTGTCCACTTCTGGAAGAGTTGCTTGAACACTGATGATTCTGCTCCTTCACTCACGGTCTCTACATAGGTGGATGAAGGATATCCTTTTGCCTTTATGTAGGCCTAGAACAATAGAACGTTACATGAGATGATGAAGTGTTTGTGAGATGTGATTGCATTAACTTTTGGTGCAATATACTATGCTGAGATTAAAAATATTGGGCCTTATTCACTAACGATTGTGTAGAAGTGTTCTTAAGTGCGCAGAAATGGTTCTCAAGCTAATTTTTTAAAAAAAAATCCAGAATATGTCAGATAATTATTTATCTCTAAATTGGCTTAAAGACTTGAATTTTAAGGACACTTTAAGGAATCAATTAGTTGATGATAAATCATGATTTCTGCATGACAGCATTCATACAAATACGTGCATATGCACATTTGTATGAGGCACATTGTAAAAAATAGTTTGGTTAGTGCTTCATTGGTGTATGTAAATTGTCTGGACTCACCTCTGCTTTCTTCAGAGACTCTGCCCTTTCAGTTTTTGATGCCTTTTTGCCCTTCCAGACAAAGATCTTTATTCCGCCTTGATCTAGCAGATAGCAGTCCTGCCACAGGAATCAGATTTCAATACATTTATACTGCAGCTACTTAGCAGTATCTTTTTTTTCTTTTGAGAGCCATTGTCTTTTGTGTACCAAAATGAGAATTATACACTCAATTTGCATTTGAATAGCTGTTCATCATGCATACAACTTGCTTGTTTCTTTACTGGTCCTGCTTCTCCATTTCAAGTCGACATGAAATCAGATTTGATTCTATTTACTTTTTAAATGCATATTGTGCACAATTCATTGGTGCATACTATTTGTTTTTTTGTTTTTTTTTAAAGGTTTGTCTTCATAACCTTGTATCAAAACATAATAATGTAAGAACTTGCTCAGCATCTGAAACAACTCTCTTTTTTCAGTTGATGTCACAAGTTCCTCTTTCTTTTTAGCCCATTTCCTCCAACTACTCCATCCTTGGCTTCAACTCTCACGTTTCACTATCTAATCGATTCCTGATAAATAAAATCAAGTCTCGCAATACATTTCTCATTGAACATCCCTTTTGTCTTGAGGGTATGTCAGATTACAGAAGCAAAATGGTTTGCCAGGAGCATTTCCTGGTGACTTTGACATTTTGAATGGTAGTCGGTCATATTTGCATCACAACCGCTTGACCAGGTCAAACTGAGTAGTGAAAATGACTGTGTTCCTGATAGTTCTGTCTTATCTTAACAGACATCTACTACAGTTTGTAGGCTTGCACGTTATGCTGATGCAGACCCAATTTACACATATGTCCCTCCCAGCTGTGATCAATGAAATGCACCTGTGCACTTTCACCTTGCTATCAACTTGGCCTTTATACAGAATTGCTTTGGGTGAGGGATCAGGGTTAATCATACCTCAGTTTTCAGTAGGTCTTGTGTGAGAGGTTTCACTGCCACCTCCTGAACTACAAGGTTACCGTCAGCATCTGAAATACTTTTCACACAAGATTGTTTTAGTTGCAGTGCTTATTTTTCAATACAATAATGCAGCAAGATGCAGTTGTGATTTAAAACAGTTTCAAGTTTAACTCACTGAAAGAGTTTAATGGCAGTCTTCAGTTTCTCATCAACAATCTCATCTGGGATGGCATCTCTGATCTCTTTTCTGTCCCCCAATGCCTGCTTCATCATTTTCATGGCTTCCTCAGAGGATTTCTCATCATCTCCTTCCACTACAGTCACTTGTGCTCGACCACCTCTCTCTCGGTCACGAATGTCCTTCGCTAGGTTCATTCCCTATTAAAAGCCATCAGTAAACTTACTGTGCAGATGTTTTAATATAGATCTTCAGCATCAAGAATGTGATTCTTTACTTTAAATTGGGCTTTTTTTGCACGGGAAATCAATTCTAATGGTTTACCCTTAACCTCTCCATTCGGTTACTCTTGGGTCCATTCCACTGAATGATCAGGCTCCCCAGATCCAGCAGGAACACATCACCTTTATTAAAGCTCTTCCAGCTCATTTCCACCTGAACACAGACGGATTGAGCCACATTATTACACTTTTTGGGGGAAATCAGCTTACTTACTTGGGGGTAACACATTACAAGTAACGCGAATTATGTAATCAGATTACTTTTTTGAGTAAAGTAACACATTACTTTCAAATTTACAACAAAATAGTTACTTTTCTGAATTAGTAACGCAAGTTACTTTGTTTTCCCATTTACTTACTGACACCTGTCCCCATGTTGAGAGAAATCAGGAGTAAGTGCAGAGGCGTTTGTGCGTTTTGTGAACAAGATAGGTATTGTAGTTCTGGTATCACTAAATGTGAACATGCATTTACTTATCTCCCTTGCACAAAAACAGATTCAGTATTTCTCAAAATGAATAAAAATAGTTAAAGGCAAACAGTGGCGCCTGCAGCCGTACGGCTGTACGCACTGTGCGTACCATGAGAAGGGCGCTAATTAATGCCGTTTTTATTTTTTACATAATTTTTAAATTGATTATTAAAATCTTTCTGTGTACACTCATGACATATTAAGAATAAATAAAGGTGTGCATTTGTGTGTTGTATAGTCAAATGTGTTTATGTGCCCATGGGTGGGCGTGGGGGATATGGGTGAAAAGAAATCTGATTGGATAGTTTAGTTTCGTCACTTTTTGCACACATAAAAAATATTACTACGGGGGGGAACGTACCTGTGGGAACATTTTCACGAGTTGCAAAATAGGTACCAATACGTACATATCACTGCAGTTTCAATGTGAAATGTCCACTGAGTGGCACTAAAAGCGCGTTTTTTTGTTTGTTTGTTTGTTTGTTTGCCAGAACAGATAAATGTGAATATGGCACATTTTTATGACATTGGTTTTTATACGAATCACCGCTGTTCTGATTTTAAAATTTGTCCGGTGAGTACCGCTAAAAGTGTAATGCTCCATTATTTTTAAAATAACGTACCACCAACACTACACCTAAACCTACCCGATAGTGTTAACAAAAGCAAATGTGACATAAAAAGCATCCGTAATCGTGCTGATTTAGCTTGTTTTGATCTCTCATCTTTGAGCTCTTTTACCGTGACTCGTTTTTCCCTGGATTCGTACCCAAGTCTACCTCATCCTAAGTACAACTCCATATCAGCTGAGCTACCGAGCAAGCTTGTTATGTCAGAAAAGCGAAACATATGGAGCTGGTTAAGGGATGCAAAGTCCAAAATATATTTGTTTACAAATCGTGCACTTTGGTAGAAAGCGTTTTGAAGTCATAACATAATATTGTGCAAGGAGACGTGAAAACAAGTCTTTATTAATCCATAAGCTGACCCTGTAATCGTAACTGTGTATGAAAGCGATTAAAAGCGCTTGCTGTTTTACTGCCTCTAGTGTTCATTTCTGTTGGAAACTGCAGTGATATGTACGTATTGGTACGTATTTTTGCGACTCGTGAAAACGTTCACACAGGTACAGTACGTCTTTCCATGAGACCAGGTTGGTTATAATACAAATATACTTTATGTATTTAATCTCACTTTATTAATCATTGTAAAGTAACTAAGTAATGCAATTAGTTACTTTTATGGAGTAATGCAGTATTGTAACGTATTTCTTTAAAAGACAACACTGCTTACTGCCTCTCAAGCTAATTTAAGACACATAATGCATATAATACTAATACATTCACATAATTAATATAATACTAAATCATTTATGATCTGAGTGGTTGGTTTTTGTGTGGTTGACACAAGAAAAAAAGGAGTAGTAAAATGTCACACGGTCTAGGAGGCGGCTTTTTACACCACTGACCAGTATGCAGTGTTGTAGTGGGTCAGAGTTCCTCTATTGTAGTCTGATTGGGGCTATTCTTACCTCTCCTGCAACCACATGCTTATTTCCCTTAACATGCAGCAGTCTGCGAATGTTGTACGTGTTTGTCTCCACTTGTTTCATCCCAGATGCGACACCACCTTTTTTTACACGATGCCCTGTTTGAAGTATCCTTGGAAGGTGGCGCTCTCATGGCCCTGGGTCTCACGATGCTGCACAGCAACGCCCCCTAGGTGATCATCCATCTGTGTGGTGTATATCGCTGCTGCTCCCTGCTCATCCTGGGAGGTGGCCTTGCCCAGCCAATAATGAATGTCATAGGAGTAGTTGTTGCTGGTCTTGTGAGTCTGAAAATTATTTTTGTTTCTTATTAGCTCAAACATTTGTTCACTGATCTCTAAGGTTGTCAGCTCGAAAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66495 True 5252 lncRNA 0.38 2 13996825 14004082

Neighbor

gene id symbol gene type direction distance location
CI01000009_13942733_13946356 FRZB coding upstream 50420 13942521 ~ 13946405 (+)
CI01000009_13884165_13939556 NCKAP1 coding upstream 57137 13883847 ~ 13939688 (+)
CI01000009_13811227_13837798 NA coding upstream 158430 13811076 ~ 13838395 (+)
CI01000009_13798741_13799037 NA coding upstream 197634 13796884 ~ 13799191 (+)
CI01000009_13752424_13753460 NA coding upstream 243002 13752424 ~ 13753823 (+)
CI01000009_14007631_14010487 NA coding downstream 3005 14007087 ~ 14010693 (+)
CI01000009_14033666_14036472 RETSATL coding downstream 29584 14033559 ~ 14036472 (+)
CI01000009_14039505_14043545 RETSATL coding downstream 35127 14039209 ~ 14043609 (+)
CI01000009_14095330_14128580 NA coding downstream 89563 14093645 ~ 14128582 (+)
CI01000009_14170062_14192930 NA coding downstream 165139 14169221 ~ 14193332 (+)
G58389 NA non-coding upstream 18221 13975388 ~ 13978604 (+)
G58310 NA non-coding upstream 160946 13833541 ~ 13835879 (+)
G58301 NA non-coding upstream 248002 13745821 ~ 13748823 (+)
G58307 NA non-coding upstream 350429 13637284 ~ 13646396 (+)
G58252 NA non-coding upstream 411569 13523613 ~ 13585256 (+)
G58384 NA non-coding downstream 7823 14011905 ~ 14018473 (+)
G58421 NA non-coding downstream 46895 14050977 ~ 14051404 (+)
G58467 NA non-coding downstream 93409 14097491 ~ 14097703 (+)
G58489 NA non-coding downstream 121238 14125320 ~ 14156231 (+)
G58452 NA non-coding downstream 194556 14198638 ~ 14201846 (+)
G58028 NA other upstream 853217 13140378 ~ 13143608 (+)
G57701 NA other upstream 973687 13006643 ~ 13023138 (+)
G57691 NA other upstream 1078360 12906444 ~ 12918465 (+)
G57682 NA other upstream 1104486 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1560808 12432538 ~ 12436017 (+)
G58382 NA other downstream 29477 14039757 ~ 14039901 (+)
G58455 NA other downstream 242613 14246695 ~ 14258526 (+)
G58558 NA other downstream 492854 14496936 ~ 14501514 (+)
G58649 NA other downstream 645642 14649724 ~ 14652022 (+)
G58711 NA other downstream 762577 14766659 ~ 14773773 (+)

Expression


Co-expression Network