G58384


Basic Information

Item Value
gene id G58384
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14011905 ~ 14018473 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66481
GCATAGCCCAAATTCATAAAAGAACAAGGCAAAGTACAGTTGTAATTTATTTATATTTTAGACATTTACAGAGCCTTTATATACAAACACACATATTCTATATATTCTATATCCTATATATTCTATAACCTAAATTGAATGTTATGAACATTGAAGGACCAATAGGCATGTTACAATGCAAAGCTAAGCAAATGTCTATTATGTTAATAATGTGGAAAGCCAGCGTTCAGTGTTCAGTGCTCATGTTTCATAATGGAGAATATGTGAAATGCAGTACAGAGGCATTGCATAGAGATATCATTAGTTTCCATAGGGATTTGCATCTGGACAGACATTGAAACATACAATATTAAGGTACTGAGAGTTTCTAAAATGTAAATGCTTTTACCAATGCACAACTGTAGAGACAGACATTTTAACGAGGCCTTTGTGAACTGAAATTGCCAAAACCTTTCCAAGAGTCCTCAGAAAACAGTGCCATTGAAGGTTCTTGTTTATCATTAAGCGATACAAAAATATAATGATACATTTATTTATAAATTAATCCCAGATGGAACTTGTTGTAAAAGTAAATTTTGCACTCTTTACTCTTCTGTATTTCCCTGTATACAAAATTTGAAAAAATTGTGACCAATCTTTGTAAATGAGACAAAACAGAAAATAAAAAAGCATGTTAAATATAAACTATGTTAAATATATTTAATGCAGTTAAACATTTAATCTGAATTATTACTAATACAATAAAATCAGTGCACGAATTTTATGAATTTCACATAAAGATTGCAATGGACATTTTAAGCTCTTTCATTTTTTTGCATGATCATGTATCAGACCTATAGATTATTTACCACACATCCACACTGTGCTTCATGCGTTTCAGCACCAACAAGTTTTTTCAAGAATCTCCAGAAAATGTTGGGTTTTGAACTGTGGTCGTAGCATTCTGGAATAATGGGTTGGTACCCTGTGGTTTTTTCATGTTTTCTGTCTTTTTCAAATCTCTTCCATTCTCTAAGGTCGCTTGCATATAGAATTGCCTTGACAATGAGGAGGATTAGGAGACCAATCAACGCCACACCTGCCAGAGATCCTCCTACGATGGCTGCTATGTTCGGCCCCACAGGACATTCTAACACAAGAAACATGAAGGTAGAATGCTTTTCTTTTTGCTGTTTCAATTGTGATGCTTGTTTAAAATGGAATATTTGTCCAAAAATGAAAAGTATGTCATTATTTACACACCCTCATATTGTTGCAAACCTCTATACTGTTTCTTATGCTGTCAAACATCATAAAAAGTCTTTTACTACCATATAAACTACTTTTACAGTTTTTACTTGTTTGTCATTATAAACTATTGCTGTATGTAAAATAAATATTAAAGGGTTAGTTCACCCATAAATGAAATTTCTTTCATTAATTACTCACCCTCATGTCGCTCCGAACACGCAAGACCTTCGTTCAT
>TU66484
GCATAGCCCAAATTCATAAAAGAACAAGGCAAAGTACAGTTGTAATTTATTTATATTTTAGACATTTACAGAGCCTTTATATACAAACACACATATTCTATATATTCTATATCCTATATATTCTATAACCTAAATTGAATGTTATGAACATTGAAGGACCAATAGGCATGTTACAATGCAAAGCTAAGCAAATGTCTATTATGTTAATAATGTGGAAAGCCAGCGTTCAGTGTTCAGTGCTCATGTTTCATAATGGAGAATATGTGAAATGCAGTACAGAGGCATTGCATAGAGATATCATTAGTTTCCATAGGGATTTGCATCTGGACAGACATTGAAACATACAATATTAAGGTACTGAGAGTTTCTAAAATGTAAATGCTTTTACCAATGCACAACTGTAGAGACAGACATTTTAACGAGGCCTTTGTGAACTGAAATTGCCAAAACCTTTCCAAGAGTCCTCAGAAAACAGTGCCATTGAAGGTTCTTGTTTATCATTAAGCGATACAAAAATATAATGATACATTTATTTATAAATTAATCCCAGATGGAACTTGTTGTAAAAGTAAATTTTGCACTCTTTACTCTTCTGTATTTCCCTGTATACAAAATTTGAAAAAATTGTGACCAATCTTTGTAAATGAGACAAAACAGAAAATAAAAAAGCATGTTAAATATAAACTATGTTAAATATATTTAATGCAGTTAAACATTTAATCTGAATTATTACTAATACAATAAAATCAGTGCACGAATTTTATGAATTTCACATAAAGATTGCAATGGACATTTTAAGCTCTTTCATTTTTTTGCATGATCATGTATCAGACCTATAGATTATTTACCACACATCCACACTGTGCTTCATGCGTTTCAGCACCAACAAGTTTTTTCAAGAATCTCCAGAAAATGTTGGGTTTTGAACTGTGGTCGTAGCATTCTGGAATAATGGGTTGGTACCCTGTGGTTTTTTCATGTTTTCTGTCTTTTTCAAATCTCTTCCATTCTCTAAGGTCGCTTGCATATAGAATTGCCTTGACAATGAGGAGGATTAGGAGACCAATCAACGCCACACCTGCCAGAGATCCTCCTACGATGGCTGCTATGTTCGGCCCCACAGGACATTCTAACACAAGAAACATGAAGAATGGCAGCGAGTTTTCCATCCCCTGCCATGTGGAAGCCGTCATCAGTGGCCAGCACCAGCAGCCGAGTGCTGTTTCCCCAACCAATCTCATCCTGTGCACAGGTAACACATTTTGCTTTGTATTTACATACATGAAATAGAACGTCATGCATGAATCAGGCTTCGTATAACCTCTTGCTCCTTTGCATTATATATAATGAAGGTAAACAGGTTTTATGTAAGTATTTCACACAGCATGACATATAATTCACATTCCTTTGTACACAGTGTCTGTTAATATGGTTGCCAAAGTAAATTTCTGCCACTTATGCATGTGGTGTGAAGTGTTCTAAGTCTCACCACACAGACAGCGGCTTGCATGATGGCATCCAGACTTCCCTCTGGAGGGTCCAGGTTTCCAGATATATGCTGCTTGGCTACCATATCTCTAAACTTATTCCCGTCTTTTGTTAGTGAAAGCACATGCTGAAAGCCAAATGCAGGCTGGCATGGTTCATTTTTATCCGCGCATGGCTGTTTGAGCTTCGCTTCATTGGTGTCAGTGTATGGAAGAAGAGTTTTGTCGACAAACGAACCA
>TU66485
CTAGTATTTTAAGTAATAATTTGTGTATTTATAGGGCGGCTTTGTAAATGTCAAGGTCACACAAGTTTTCTTACCCTGACTGTTGACACGGACGTTGACAAGTAGGACATGTTTTGCAGTAGGGCCCCTTGTATCCTCTCTCACATACACACCGGTTACATTCACATTTACCACGGTTAAAACAAACACTCCCATCTGTCTTGCAAGCCTCATCGGATTTTGCACAGTGACACGCTGTGCCCTCGTAGCCTTGTTCACACTCACATTTACCACATTTGCACTTGCCATGGCCTGCACTGTTTATTTTCATATTTTTCACAGTGCTCATCGTCACATTCACAGTGTTCGCCATAGAAATTGCCACCGCCCTCTGTGATATGGCACTGACACCGTCCACAAACACAATCTCCTTTGCCTTCGCATTCGGTCCCGTTGTCCTTCCGGCACTGCGCTTTCAGTGAGGCCTCGTCCTTTTGGCCTAGTTTGCACTCACAGCGCTGTCCTAAGTAACCAGTATTACAACGCAGCTGCCACAGACGACTGTACCCTGACCCCCACAGTGAGGATGAGGTTTATTGGAATCGTCACATTCACATTTACATCGAGTCTGAACGGTCACTTTCAGTTTTTCATTAAAGCCCAGTGGCCCAATGAGGAAGCTCTGACTGTCCTCAAAGCATTTGTCTGCTGTTACTTTCACAGTAAAAGTCACGTTCTGTCCAATGTTCACATTGTCACACTTCCCCCTGTCACTGGGTTTTTCTCCACCTGCACAGTTTGATGTGTATTTCACAGATATGAAGTTCGGGAGGGCATCATGAGCCATGATCACTTCAGAGGTTAAGTTATTGTATGCATCCACAATTAGTTTGACAACGTTGCTTGAGTCGTCAGAAAGCACTCCTACTGCAGATTTAGGGATCAGTTTGCTCAGCTCTGCGTACACAGTTTCCATTTTTTTAGTGACGGCAAAAATTGGTTGTATGTTTTGCTCCTCCAGCTTGCGAGCTATCTGTCCAACAGATGGGTAGTCCCAGATGTTGCTCATGCTGTACTTATTGCCGACCATCTGACAGGTTTCTTTGTTTGGTTCCAGAATGGCAGCGAGTTTTCCATCCCCTGCCATGTGGAAGCCGTCATCAGTGGCCAGCACCAGCAGCCGAGTGCTGTTTCCCCAACCAATCTCATCCACACAGACAGCGGCTTGCATGATGGCATCCAGACTTCCCTCTGGAGGGTCCAGGTTTCCAGATATATGCTGCTTGGCTACCATATCTCTAAACTTATTCCCGTCTTTTGTTAGTGAAAGCACATGCTGAAAGCCAAATGCAGGCTGGCATGGTTCATTTTTATCCGCGCATGGCTGTTTGAGCTTCGCTTCATTGGTGTCAGTGTATGGAAGAAGAGTTTTGTCGACAAACGAACCA
>TU66486
CTAGTATTTTAAGTAATAATTTGTGTATTTATAGGGCGGCTTTGTAAATGTCAAGGTCACACAAGTTTTCTTACCCTGACTGTTGACACGGACGTTGACAAGTAGGACATGTTTTGCAGTAGGGCCCCTTGTATCCTCTCTCACATACACACCGGTTACATTCACATTTACCACGGTTAAAACAAACACTCCCATCTGTCTTGCAAGCCTCATCGGATTTTGCACAGTGACACGCTGTGCCCTCGTAGCCTTGTTCACACTCACATTTACCACATTTGCACTTGCCATGGCCACCTGCACACTGTTTATTTTCATATTTTTCACAGTGCTCATCGTCACATTCACAGTGTTCGCCATAGAAATTGCCACCGCCCTCTGTGATATGGCACTGACACCGTCCACAAACACAATCTCCTTTGCCTTCGCATTCGGTCCCGTTGTCCTTCCGGCACTGCGCTTTCAGTGAGGCCTCGTCCTTTTGGCCTAGTTTGCACTCACAGCGCTGTCCTAAGTAACCAGTATTACAACGCAGCTGCCACAGACGACTGTACCCTGACCCCCACAGTGAGGATGAGGTTTATTGGAATCGTCACATTCACATTTACATCGAGTCTGAACGGTCACTTTCAGTTTTTCATTAAAGCCCAGTGGCCCAATGAGGAAGCTCTGACTGTCCTCAAAGCATTTGTCTGCTGTTACTTTCACAGTAAAAGTCACGTTCTGTCCAATGTTCACATTGTCACACTTCCCCCTGTCACTGGGTTTTTCTCCACCTGCACAGTTTGATGTGTATTTCACAGATATGAAGTTCGGGAGGGCATCATGAGCCATGATCACTTCAGAGGTTAAGTTATTGTATGCATCCACAATTAGTTTGACAACGTTGCTTGAGTCGTCAGAAAGCACTCCTACTGCAGATTTAGGGATCAGTTTGCTCAGCTCTGCGTACACAGTTTCCATTTTTTTAGTGACGGCAAAAATTGGTTGTATGTTTTGCTCCTCCAGCTTGCGAGCTATCTGTCCAACAGATGGGTAGTCCCAGATGTTGCTCATGCTGTACTTATTGCCGACCATCTGACAGGTTTCTTTGTTTGGTTCCAGAATGGCAGCGAGTTTTCCATCCCCTGCCATGTGGAAGCCGTCATCAGTGGCCAGCACCAGCAGCCGAGTGCTGTTTCCCCAACCAATCTCATCCACACAGACAGCGGCTTGCATGATGGCATCCAGACTTCCCTCTGGAGGGTCCAGGTTTCCAGATATATGCTGCTTGGCTACCATATCTCTAAACTTATTCCCGTCTTTTGTTAGTGAAAGCACATGCTGAAAGCCAAATGCAGGCTGGCATGGTTCATTTTTATCCGCGCATGGCTGTTTGAGCTTCGCTTCATTGGTGTCAGTGTATGGAAGAAGAGTTTTGTCGACAAACGAACCA
>TU66487
CTAGTATTTTAAGTAATAATTTGTGTATTTATAGGGCGGCTTTGTAAATGTCAAGGTCACACAAGTTTTCTTACCCTGACTGTTGACACGGACGTTGACAAGTAGGACATGTTTTGCAGTAGGGCCCCTTGTATCCTCTCTCACATACACACCGGTTACATTCACATTTACCACGGTTAAAACAAACACTCCCATCTGTCTTGCAAGCCTCATCGGATTTTGCACAGTGACACGCTGTGCCCTCGTAGCCTTGTTCACACTCACATTTACCACATTTGCACTTGCCATGGCCTGTAAAAAGTAAAAACATTACACTTAAGAACTTATTCTAAAAAACAAACTATAAATCACTTAAAAATTTCTACACAAATCACCTGCACACTGTTTATTTTCATATTTTTCACAGTGCTCATCGTCACATTCACAGTGTTCGCCATAGAAATTGCCACCGCCCTCTGTGATATGGCACTGACACCGTCCACAAACACAATCTCCTTTGCCTTCGCATTCGGTCCCGTTGTCCTTCCGGCACTGCGCTTTCAGTGAGGCCTCGTCCTTTTGGCCTAGTTTGCACTCACAGCGCTGTCCTAAGTAACCAGTATTACAATGCAGCTGCCACAGACGACTGTACCCTGACCCCCACAGTGAGGATGAGGTTTATTGGAATCGTCACATTCACATTTACATCGAGTCTGAACGGTCACTTTCAGTTTTTCATTAAAGCCCAGTGGCCCAATGAGGAAGCTCTGACTGTCCTCAAAGCATTTGTCTGCTGTTACTTTCACAGTAAAAGTCACGTTCTGTCCAATGTTCACATTGTCACACTTCCCCCTGTCACTGGGTTTTTCTCCACCTGCACAGTTTGATGTGTATTTCACAGATATGAAGTTCGGGAGGGCATCATGAGCCATGATCACTTCAGAGGTTAAGTTATTGTATGCATCCACAATTAGTTTGACAACGTTGCTTGAGTCGTCAGAAAGCACTCCTACTGCAGATTTAGGGATCAGTTTGCTCAGCTCTGCGTACACAGTTTCCATTTTTTTAGTGACGGCAAAAATTGGTTGTATGTTTTGCTCCTCCAGCTTGCGAGCTATCTGTCCAACAGATGGGTAGTCCCAGATGTTGCTCATGCTGTACTTATTGCCGACCATCTGACAGGTTTCTTTGTTTGGTTCCAGAATGGCAGCGAGTTTTCCATCCCCTGCCATGTGGAAGCCGTCATCAGTGGCCAGCACCAGCAGCCGAGTGCTGTTTCCCCAACCAATCTCATCCTGTGCACAGGTAACACATTTTGCTTTGTATTTACATACATGAAATAGAACGTCATGCATGAATCAGGCTTCGTATAACCTCTTGCTCCTTTGCATTATATATAATGAAGGTAAACAGGTTTTATGTAAGTATTTCACACAGCATGACATATAATTCACATTCCTTTGTACACAGTGTCTGTTAATATGGTTGCCAAAGTAAATTTCTGCCACTTATGCATGTGGTGTGAAGTGTTCTAAGTCTCACCACACAGACAGCGGCTTGCATGATGGCATCCAGACTTCCCTCTGGAGGGTCCAGGTTTCCAGATATATGCTGCTTGGCTACCATATCTCTAAACTTATTCCCGTCTTTTGTTAGTGAAAGCACATGCTGAAAGCCAAATGCAGGCTGGCATGGTTCATTTTTATCCGCGCATGGCTGTTTGAGCTTCGCTTCATTGGTGTCAGTGTATGGAAGAAGAGTTTTGTCGACAAACGAACCA
>TU66483
AGTCAAACCAAAAATTACTTAGACACTAGATATAATTTTTTATATTTTTTACTAGTGGGTGCAGGACACTATAGTTCATTTATGTAAGTGAGGATAGCAAAATAAAGTAAACTGTGACATATTATACCCAAAAATTCTTCATACAGTGGACTACCAGTAAAATGTATAAAAATTTGGGACCAAAAATGATTCAGACACTTTGACCTTACCATGTTTTGCTTAAGTGCTATCTGACATAATTAAGATTAATTTTTTCTGACACAGTTTAACTCTGAGATCTTGTCATAGTTTATTATCATTTTTTAAACTATATTGAATAAACTGTAATAATGAATGAAATGTTCAAGGTGTCTGAATACATTTTGGTTTTACTGTATATGTAAGAATGTTAGAATTATGTTAGATTCCTGTGATGGATAAGTTTAGGGATAGCTTCCTGTGAACTGTATAGTCACATCCATATACATGCACATATACAGTGTGTATATATATATATATATATATATATATAATAAAATGGTCTCTTACCTGCAGCTGCCACAGACGACTGTACCCTGACCCCCACAGTGAGGATGAGGTTTATTGGAATCGTCACATTCACATTTACATCGAGTCTGAACGGTCACTTTCAGTTTTTCATTAAAGCCCAGTGGCCCAATGAGGAAGCTCTGACTGTCCTCAAAGCATTTGTCTGCTGTTACTTTCACAGTAAAAGTCACGTTCTGTCCAATGTTCACATTGTCACACTTCCCCCTGTCACTGGGTTTTTCTCCACCTGCACAGTTTGATGTGTATTTCACAGATATGAAGTTCGGGAGGGCATCATGAGCCATGATCACTTCAGAGGTTAAGTTATTGTATGCATCCACAATTAGTTTGACAACGTTGCTTGAGTCGTCAGAAAGCACTCCTACTGCAGATTTAGGGATCAGTTTGCTCAGCTCTGCGTACACAGTTTCCATTTTTTTAGTGACGGCAAAAATTGGTTGTATGTTTTGCTCCTCCAGCTTGCGAGCTATCTGTCCAACAGATGGGTAGTCCCAGATGTTGCTCATGCTGTACTTATTGCCGACCATCTGACAGGTTTCTTTGTTTGGTTCCAGAATGGCAGCGAGTTTTCCATCCCCTGCCATGTGGAAGCCGTCATCAGTGGCCAGCACCAGCAGCCGAGTGCTGTTTCCCCAACCAATCTCATCCACACAGACAGCGGCTTGCATGATGGCATCCAGACTTCCCTCTGGAGGGTCCAGGTTTCCAGATATATGCTGCTTGGCTACCATATCTCTAAACTTATTCCCGTCTTTTGTTAGTGAAAGCACATGCTGAAAGCCAAATGCAGGCTGGCATGGTTCATTTTTATCCGCGCATGGCTGTTTGAGCTTCGCTTCATTGGTGTCAGTGTATGGAAGAAGAGTTTTGTCGACAAACGAACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU66481 False 1465 lncRNA 0.33 2 14011905 14013492
TU66484 False 1727 lncRNA 0.37 3 14011905 14018473
TU66485 False 1427 lncRNA 0.47 8 14015113 14018473
TU66486 False 1432 lncRNA 0.47 8 14015113 14018473
TU66487 False 1759 lncRNA 0.44 6 14015113 14018473
TU66483 True 1434 lncRNA 0.40 6 14015962 14018473

Neighbor

gene id symbol gene type direction distance location
CI01000009_14007631_14010487 NA coding upstream 1212 14007087 ~ 14010693 (+)
CI01000009_13942733_13946356 FRZB coding upstream 65500 13942521 ~ 13946405 (+)
CI01000009_13884165_13939556 NCKAP1 coding upstream 72217 13883847 ~ 13939688 (+)
CI01000009_13811227_13837798 NA coding upstream 173510 13811076 ~ 13838395 (+)
CI01000009_13798741_13799037 NA coding upstream 212714 13796884 ~ 13799191 (+)
CI01000009_14033666_14036472 RETSATL coding downstream 15193 14033559 ~ 14036472 (+)
CI01000009_14039505_14043545 RETSATL coding downstream 20736 14039209 ~ 14043609 (+)
CI01000009_14095330_14128580 NA coding downstream 75172 14093645 ~ 14128582 (+)
CI01000009_14170062_14192930 NA coding downstream 150748 14169221 ~ 14193332 (+)
CI01000009_14242224_14243004 NA coding downstream 223644 14242117 ~ 14243724 (+)
G58388 NA non-coding upstream 7823 13996825 ~ 14004082 (+)
G58389 NA non-coding upstream 33301 13975388 ~ 13978604 (+)
G58310 NA non-coding upstream 176026 13833541 ~ 13835879 (+)
G58301 NA non-coding upstream 263082 13745821 ~ 13748823 (+)
G58307 NA non-coding upstream 365509 13637284 ~ 13646396 (+)
G58421 NA non-coding downstream 32504 14050977 ~ 14051404 (+)
G58467 NA non-coding downstream 79018 14097491 ~ 14097703 (+)
G58489 NA non-coding downstream 106847 14125320 ~ 14156231 (+)
G58452 NA non-coding downstream 180165 14198638 ~ 14201846 (+)
CI01000009_14264935_14273006 NA non-coding downstream 246450 14263423 ~ 14277555 (+)
G58028 NA other upstream 868297 13140378 ~ 13143608 (+)
G57701 NA other upstream 988767 13006643 ~ 13023138 (+)
G57691 NA other upstream 1093440 12906444 ~ 12918465 (+)
G57682 NA other upstream 1119566 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1575888 12432538 ~ 12436017 (+)
G58382 NA other downstream 15086 14039757 ~ 14039901 (+)
G58455 NA other downstream 228222 14246695 ~ 14258526 (+)
G58558 NA other downstream 478463 14496936 ~ 14501514 (+)
G58649 NA other downstream 631251 14649724 ~ 14652022 (+)
G58711 NA other downstream 748186 14766659 ~ 14773773 (+)

Expression


Co-expression Network