LOC103025099 (LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090)


Basic Information

Item Value
gene id LOC103025099
gene name LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46069573 ~ 46076984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232827.3
AGCAGGAGGAGAAGCTCAGGTCCTCCCTGAGTTCATCTGCAGTTTGTTTACTTCAGCCTGCACTGCATCTAAACAGACACAATGAGTTGTCCATCATCTGGTCAGCAGGGTAACGGTATATGGCCTTGTCAAGGCACTCAACAACCAGGAGCTCCAGTGTGGCCAGGGCAGCCCTGCCAACCTAGTTGGCCATCTCAGCCCAGTCAGCCTAACTGGCCTGCCCAGCCCAACCAGCCAAACTGGCCCAACCAGCCAAACTGGCCCACTCAGCCCAACCAGACAAACTGGCCCACTCAGCCCAACCAGCCTAATTGGCCAGGAATGCAGCCATGTGGAGGAAATTGGCCACCAAACCAGACAGCCATACCCAGCCAACCGGCCTGGCCTGTTCCTCCAACAACTCAACCCAGCCAACCAAGTCAACCCACTCAACCCAGTCTACCAGTTCCCCCAATCCAACCTACTCAGCCAAGCCAGCCAACTCCACCAACTCAACCAATTCAACCAACTCAACCAATTCAGCCAACTCCCCCAGTTCAGCCCACCTGGCCTGCACAGCTTCCCACACCCACAGGTTACCTTCCCACACCAACACATCCAGGGTGGTCCGGAAACCCCGGGCAGTCAGGATGGCCTGGTCAAGGCGCCACTGGAACCCAGACACGTCCATGGCCACCAGCTCCAGCCACAGGCCCAGTGTCAGTGCCCTTCAACATGAACTTCCCCAGAGGAATCTACGACAAGCTGATGCTCACAATAAGAGGGCAGATTAAGTCTGATGCCAAAATGTTTACTATAAATTTCCTGCGAGGCAATGACATCGCCTTGCACATCAACCCACGCTTTAATGACGGAGGAAAGCAGGTCTTGGTCCGCAACCACAAGCTGGGGGAAAAATGGGGGGCAGAAGAGAGGAACCTCCTGGGACCCTTTCCATTTCTTCCAGGACATCATTTTGAGATGAAGATCCTCTGCACAATCAATGAATTCAAGGTGGCGATCAATAGCACGCCCATGTTTGAATTCAAGCATCGCATCAAAGAGGTTAACCAAATCGACCGTATCAACATCCTGCACGACGTCACTCTCACTTCAGTCAACGTGGACACTCTGCCCTGAGCCGATCATACCTCTTGCCTGATCAGCCACACAGCCTACGTCCTCTGCACTGGACTGCAGGACAACAGTCCAAACGCTTCATCACTCAAATCACCCACCTCTTCAGTTAACCACTCTTCCGAGAATAAACAAGCCTTCCACAGTCAACAAAATTATTTGCTATGGAATAGCTCAAATACTGCATATTTCAGTGCTTATGATAGTAATGCTCTCCCTATTTCAACTCAACATTGCTCTGCACTCTGATAAATAAAGGTGCTTCAGAAGgttcattttttgagatgccacagaagacaacatttctttacctatttaaacattcataaatactgtatgatattacagagtgtttaaaaactccagcagcattgctgtgtCTGATACCCTATGACCAGCACGATTGGcgtaaataacaatattttgcaTGGCATATTTAGCAGTCCtaggttcttctatggcatctcAAAAACTACATAtacagctccagaaaaaaattaaaagaccacttcagtttctgaatcagtttctctgattttgctatttctaggtttatgtttgagtaaaataaacattgtggtTCTAGTGTATAAACTATTGacaccatttctcccaaattccacataaaaatagtcatttagagcatttatttgcagaaaatgagaaatgg

Function

NR:

description
PREDICTED: galectin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232827.3 True 1786 mRNA 0.48 6 46069573 46076984

Neighbor

gene id symbol gene type direction distance location
lamp5 lamp5,zgc:165600 coding upstream 123741 45934474 ~ 45945832 (+)
plcb4 plcb4,LOC108258041 coding upstream 143472 45802754 ~ 45926101 (+)
LOC103021983 plcb1,LOC108258091 coding upstream 284119 45615562 ~ 45785454 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding upstream 499089 45560546 ~ 45570484 (+)
LOC103022161 NA coding upstream 567927 45495681 ~ 45501646 (+)
LOC103030371 NA coding downstream 55589 46132573 ~ 46134116 (+)
LOC103027027 LOC108444466 coding downstream 83667 46160651 ~ 46178257 (+)
LOC103027954 NA coding downstream 116045 46193029 ~ 46201498 (+)
LOC103028674 LOC108411639,LOC102297057 coding downstream 157695 46234679 ~ 46289280 (+)
LOC103029419 LOC108411685,LOC108258103,LOC101066055 coding downstream 215024 46292008 ~ 46300124 (+)
G26476 NA non-coding upstream 2386 46066888 ~ 46067187 (+)
G26390 NA non-coding upstream 530634 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding upstream 540988 45524488 ~ 45528585 (+)
G26322 NA non-coding upstream 956605 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 1203889 44865143 ~ 44865684 (+)
G26477 NA non-coding downstream 3321 46080305 ~ 46083403 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 278901 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 286900 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 333447 46410431 ~ 46410875 (+)
G26679 NA non-coding downstream 403207 46480191 ~ 46480391 (+)
LOC103033920 LOC108416105 other upstream 2575257 43490323 ~ 43494316 (+)
G25880 NA other upstream 2644667 43424392 ~ 43424906 (+)
G25879 NA other upstream 2647527 43421771 ~ 43422046 (+)
rps29 NA other upstream 2706129 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2807474 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 451384 46528368 ~ 46549553 (+)
G26915 NA other downstream 2201283 48278267 ~ 48315894 (+)
G26995 NA other downstream 2478813 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 2501819 48578803 ~ 48618075 (+)
G27075 NA other downstream 2664230 48741214 ~ 48742439 (+)

Expression


Co-expression Network