LOC103029419 (LOC108411685,LOC108258103,LOC101066055)


Basic Information

Item Value
gene id LOC103029419
gene name LOC108411685,LOC108258103,LOC101066055
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46292008 ~ 46300124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232845.3
AGCTGAAAGTGGAGCGTAGTGGAGACGAGAGCGTGTGTGAGCGGAGTGGAGTTATTTGTATTAttggagagagagcgagagaaagggGGCGACAGCAGCAGCGGAGGAACAGGAGGCTACCTATCTGTCGTCTGAGGGAagggggtgtgtgtatgtgtgtgtttggggacaGTGAGCTCtgctgagtgagtgagtgtgactGAGtgatagtgagtgagtgtgtgtatatgtgcgaGCGAGAGAAACACAGCCAAGCTGGCGGAGTTCAACATGGCATCGGGAGAAACGCTGTACATAGAGACGGACGGGTCGGAGATGCCGGCTGAGATCGTGGAGCTGCACGAAATCGAAGTGGAAACGATCCCGGTGGAGACCATCGAGACCACGGTGGTCGGGGAGGACGACGACGACGATGATGACGACCACCAGCCCATGATCGCGCTGCAGCCGCTGGTGACGGACGACCCGAGCCAGCTCCACCACCATCAGGAGGTGATCCTGGTGCAGACCCGGGAGGAGGTGGTCGGCGGGGATGACTCGGACCTCCGGGCCGAGGACGGGTTCGAGGACCAGATCCTGATCCCCGTGCCCGCTCCCGGGGTGGAGGACGAGTACATCGGGCAgacgctgctaaccgtggcgGGGAAGAGCTCCGTGGGGAGGATGAAGAAGGGGGGCGGCAGCGGCAAGAAAGCGGGCAAAAAGAGCTACCTGAGCGGGGCCGAAGCCAGCGGGAGGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGACCCTGGAGGGAGAGTTCTCAGTCACGATGTGGGCTTCAGATGACAAAAAGGACATTGACCATGAGACTGTGGTAGAAGAACAAATTATTGGTGAGAATTCTCCTCCAGACTACTCAGAATACATGACTGGAAAGAAGCTCCCTCCTGGTGGCATCCCAGGAATCGACCTCTCGGACCCCAAACAGCTAGCAGAGTTTGCCAGAATGAAGCCACGGAAGATCAAAGAGGATGATGCACCGAGGACGATAGCCTGCCCCCacaaaGGATGCACTAAGATGTTCAGGGATAACTCTGCCATGAGGAAACACCTACACACCCATGGGCCCCGGGTTCACGTGTGTGCTGAATGTGGAAAAGCCTTTGTGGAGAGTTCCAAACTAAAGCGGCACCAACTTGTTCACACCGGAGAAAAGCCTTTCCAGTGCACCTTTGAGGGCTGTGGGAAACGCTTCTCACTGGACTTTAATCTTCGCACACATGTCCGGATTCACACCGGAGATCGCCCTTATGTCTGCCCGTTTGACGGCTGCAATAAAAAGTTTGCCCAGTCCACCAACCTCAAGTCACACATTCTAACACACGCAAAAGCCAAAAACAACCAATGAGCACCTCCgttctgtttttccttttacacCTGAACTCAGCCTGAACACCACAAACCTAACACTGGAGGAATGAGCTGTGCTCCTCTGTTGTTCTCTTAAGGAGTGGGGGCAATAAAATAAGACCAGGAGgtctgaaaataaattatggcAATTATAAAAGACAAAAACTGAACTTTGGCAACCCATATGTCCTCACATCTGCCTGCTTAACTGCGTGGCTCTTACTGAGGAGCTGTATGAGTATGGCTGCATCTGACCCAGCTAACAACCCTCATGATTTGATGGCTTACTGTGGCCAGCGGAATGATGGAACTCATGGATGTCGTCCTCATCCATCACAGGAACGAGTAGAACTAGGACATTTGGACAGTTTGctccattttttttagttctcaAATAAATCTCACCAGTCTGCATAGATACAGTGGCATGCTGAAGTTCAAGCtccctggttaaaaaaaaaaaagtgaataactTTGTGTAAAAGATGAATGGATTGCCAAAACAGCATAAAGTTAAAGAGCCATGTTCATGATTgcttttttcctttgttttagCATTGCTGCTAACTAAAGGTAGAGTTTGGGCACCCTGCCTGGTTAGGACTTGTAAGTATTGCAGCTTGTAAATGTATTTCATAGCAGCAAAGAGTCTTTCTATTAGGGttggtttgtttgggttttttcaccctttttttgtttgattctaGTTCTATGAAATTTTTGGGCAATCTTTGATACACTGTTCTTTTCAAGTTTATCCACAAAAGCTTCAAAGATGATTAGATCGGAGTACTGTTAGGGCCATGGCAAAACCTTCAGCCTGTGCCTCCTGATGTAGTACTTTGTGGATTTTGAGGTGAGTTTAGGATAATAATCTTGCTGTTAAAGCCtggtatttatttaaatctatTGTTCCCTATACCAGTGAAATGTTTAAAAGCCAATCATTGGCACAGGTTTTAAAGGATTATTGATCAACCCCGGTGCTCTCTACTAAAAAAGTAgaatttctttttctctccaaacaTAGTTTTGCTTATTACAGCCAGAAGGTTCTAGTGCAAGGTCATCAGTCTACAAGACAcgtttttaaaatgctttatacTGATTCTGCTGCTGAATTTTGTGTTGAGGATTTTGACGACTCTTCCATGAAGgtcattttttttgtgccagttTTTCTGCACAGAAGAATAATGCACCATTGTTCCAGTTTACTAAATCCTCCTGAAGCTCTTttgcctttaatttttttttttttttttttttttttgactttcTAATAATCTTACTGGAACATCATTCTCAAAATAATCTCAACTtgacttcttttctttttgtcaaCTTCCATTTCAAGGAGTATAATATATAAGGCTTTGAAATTTACCTCACCTGATCTTTCctaaatataatcaaaaacaaGCCATAGCCCTAATGAGCTAATTAATAGCTGAGACTTTGGTAAAGTGAATCTCTTGGAGTGCCCAGAAGTTTGCATGGTGCTACGTTCCATGTTTTGCTCAGaatgttaattaaaatgtttcgaCTTCAACTTTATGCCTTGAGGAGATCAGGCCAACTCTTACTTATTTAACCTGTTCAGTAACAGAAACATTAACCAGGGTGCTCTAACCTCTGCATGCCACTGtatgatttttaattttgtatttctgAGTGTGCATATTGTACACTTATATTTGGGATGTGCTTAGAAATTCAACCTTGAGATTATTCTTTATCCATGAGGATTTAAGGTTTTGCATAGGACATGTTCTTCTTGGAAGGGTGGATCATAGTTACTGTAAGACAATACTTCAAaagtattttatgtaaaaagttatcttttactgttttgttttttttcctgtctttaTTTGGTTGTAATCTAACCATTGAATAATCTTGTATACGTGTATTGTATGGCTGTATGGAGATCATGTAGGAATGATAAGCAGCGTGATTTTCAAGTGTTTACTGCTTTAAAGTGTTTAGTCATCAgttactttctcttttttgtcacatttgtCTCACATGGAgaagaacatttaaaatcattttaaacccaTCTCACCACAAATCACAATGTGACCTATCATTTTCCTTTGTTTAGATTGTATTATAAAGGTCTAAaccataaaaatattatttgttaatatttacatttccatGTATTTCAGTGAGCTGCAATTAAAGAAAAAGGTGATAAGAATCCAAA

Function

NR:

description
PREDICTED: transcriptional repressor protein YY1-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09201 YY; transcription factor YY

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232845.3 True 3591 mRNA 0.43 5 46292008 46300124

Neighbor

gene id symbol gene type direction distance location
LOC103028674 LOC108411639,LOC102297057 coding upstream 2728 46234679 ~ 46289280 (+)
LOC103027954 NA coding upstream 90510 46193029 ~ 46201498 (+)
LOC103027027 LOC108444466 coding upstream 113751 46160651 ~ 46178257 (+)
LOC103030371 NA coding upstream 157892 46132573 ~ 46134116 (+)
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding upstream 215024 46069573 ~ 46076984 (+)
entpd5 LOC103043327 coding downstream 41733 46341857 ~ 46352200 (+)
c3h14orf37 LOC107659812,LOC107574488,LOC107704373,LOC107713862 coding downstream 120024 46420148 ~ 46430049 (+)
otx2 LOC108410484 coding downstream 155889 46456013 ~ 46460814 (+)
prpf39 prpf39 coding downstream 218989 46519113 ~ 46525826 (+)
LOC103044458 LOC108424466 coding downstream 815328 47115452 ~ 47119014 (+)
G26477 NA non-coding upstream 208605 46080305 ~ 46083403 (+)
G26476 NA non-coding upstream 224821 46066888 ~ 46067187 (+)
G26390 NA non-coding upstream 753069 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding upstream 763423 45524488 ~ 45528585 (+)
G26322 NA non-coding upstream 1179040 45111185 ~ 45112968 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 55761 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 63760 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 110307 46410431 ~ 46410875 (+)
G26679 NA non-coding downstream 180067 46480191 ~ 46480391 (+)
G26687 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 non-coding downstream 211161 46511285 ~ 46514839 (+)
LOC103033920 LOC108416105 other upstream 2797692 43490323 ~ 43494316 (+)
G25880 NA other upstream 2867102 43424392 ~ 43424906 (+)
G25879 NA other upstream 2869962 43421771 ~ 43422046 (+)
rps29 NA other upstream 2928564 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 3029909 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 228244 46528368 ~ 46549553 (+)
G26915 NA other downstream 1978143 48278267 ~ 48315894 (+)
G26995 NA other downstream 2255673 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 2278679 48578803 ~ 48618075 (+)
G27075 NA other downstream 2441090 48741214 ~ 48742439 (+)

Expression


Co-expression Network