LOC103031223


Basic Information

Item Value
gene id LOC103031223
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61950471 ~ 61983459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233019.2
GTCTGTGTACAGCAGGCACGTTAGAAAGTGTCTAGACTGAAGACATAAATCCTATCAGCGTTGTTTTGTTCTTCGCCTCTTAAAGCCTCCACATGGAATTGTGTGAGCGATGCGCGCGACTTTTTAAAGACGTTGAAGCCCTTATTAAGGAGGAAACAGAAAGCTTTGTGCAGAGAGTGAAAGGTGTTGCTGGGAGAATCTCGAAGTGCTGTGGCTGGGGTAAAACATCTGCTGTCCCTCatgaaaaactttatgaacttcTGCGACGACAGCACTTGAAGCGTGAAAGCAGCTCCAGACTGAACCATCACCTTCCCACAGTACAGAATCGTGACTCAACTGTATTACTGGAGACATGCTGTACTCTCCTGCAGTCAGATGATGTGGAGGATCAGAGGACAGTGACTCTGTCCATGCTTAATCTTCTCATAGACAGGAAAGttaaaGAAGAGCATGTCATTGAGATGGGGCTTTTGGAGCCACTGGTTGATCTCCTACAGTCTGGTGATAACACAGTTCAATGTCACTCCAGTGCATGTATTGCTTTGCTAGCCTCTTCAGATTCAAACAGAGAGGTGATTGTGGCCTCTGATGCTGTGCTGCCTCTGCTTGTCCTGGCACGGGCCTTTGATCCAAAAGTTCAACAAAATGCTGTCAGAGCCCTTCTTAATCTTACCAAATCTGagAATACGGTAGATGTGCTTTGTAAAGAGGGAATTATACCTGTGCTGGCTCTACTGTTACAGTCAACTGATTCTGAAGTTCAGTTCTGCAGCTGCTATGCATTGAGTAATATTGCTGCAGTTCCAGAGCATCACacaaaaatgctccaaattgGTGACCGTTTCCTGCTGAAATCCCTGGTCTTACTTATGGGCTCATCTGTTCTTAAGAATTCCACCCAGGCCAGTCAGTGCCTCAGGAGCCTCACTTTGAATGGTGAGGCACATAATCAACTGGTTGGGCTGGATTGGGTGTGCCCACTGTTGACCCTCCTGAGAGCCCCAGAACATACCCCCCCTGAAACTGCTTTAATGCTGCTCTCTCAGCTTTCTGCCCACCCACCAAAGAGAgaGTCTCTGGTGAATCAGGGTGTGATTCCTGTTTTGGGAGACCTGCTTCTCACACATCTGCCTAACCCAACTATAGTCACTCACTGCACTGTTACCTTCAACCACCTCTGGGACATTGTGGAGAGTCTGCAGgtCCCGCTGCCGATCGAATGCTTGTCTGGGCTTCTTCTGGCTCTTGAGTTTCATTGGAAGGAGGATGACGTTGTTTTAAGTGTATTAATTTGCCTCTATTCACTGGCTTGTCATGACTCTCTCCGATTCGGTCTTGTCGAGAAAATGACTACAACTCACATTGGCAGACTTGTGGTCATCTCCAGTGAAAGCAAAAATGTTGAATTGTCTTTTGCTGCCGGTTCTTTAATCAGCAAATTAGACATAAATGATGAACTACTGAAACTTCACCACAAAGCCATTGTGGAATACTTGATGAGATTCCTTCGCAGTCAGGAAGTGAGATTTCAGCAGCTTGCTATCTCTAGTGTGTCTAATCTCAAAAAAGGTGGAGGGCTGGGCAGAATGGTGACGAGGGTGGATCTGGAGCAGGAGCTGAACAGAGTGCAGCAGCAGACTGAACACACCAGACAGCTGCTCCTGATGCTCCGGCAGGACACTTTAACTATGGGCAAACCCTGAAGCAGCAGTGTTGATTGAATTTATGTGTTTACCATGACTAATGCAGAGTTTTATAGCAacttgtattattaatttttgcatagcagtgtttttatgtttgtgtttttat
>XM_022664187.1
GTCTGTGTACAGCAGGCACGTTAGAAAGTGTCTAGACTGAAGACATAAATCCTATCAGCGTTGTTTTGTTCTTCGCCTCTTAAAGCCTCCACATGGAATTGTGTGAGCGATGCGCGCGACTTTTTAAAGACGTTGAAGCCCTTATTAAGGAGGAAACAGAAAGCTTTGTGCAGAGAGTGAAAGGTGTTGCTGGGAGAATCTCGAAGTGCTGTGGCTGGGGTAAAACATCTGCTGTCCCTCatgaaaaactttatgaacttcTGCGACGACAGCACTTGAAGCGTGAAAGCAGCTCCAGACTGAACCATCACCTTCCCACAGTACAGAATCGTGACTCAACTGTATTACTGGAGACATGCTGTACTCTCCTGCAGTCAGATGATGTGGAGGATCAGAGGACAGTGACTCTGTCCATGCTTAATCTTCTCATAGACAGGAAAGttaaaGAAGAGCATGTCATTGAGATGGGGCTTTTGGAGCCACTGGTTGATCTCCTACAGTCTGGTGATAACACAGTTCAATGTCACTCCAGTGCATGTATTGCTTTGCTAGCCTCTTCAGATTCAAACAGAGAGGTGATTGTGGCCTCTGATGCTGTGCTGCCTCTGCTTGTCCTGGCACGGGCCTTTGATCCAAAAGTTCAACAAAATGCTGTCAGAGCCCTTCTTAATCTTACCAAATCTGagAATACGGTAGATGTGCTTTGTAAAGAGGGAATTATACCTGTGCTGGCTCTACTGTTACAGTCAACTGATTCTGAAGTTCAGTTCTGCAGCTGCTATGCATTGAGTAATATTGCTGCAGTTCCAGAGCATCACacaaaaatgctccaaattgGTGACCGTTTCCTGCTGAAATCCCTGGTCTTACTTATGGGCTCATCTGTTCTTAAGAATTCCACCCAGGCCAGTCAGTGCCTCAGGAGCCTCACTTTGAATGGTGAGGCACATAATCAACTGGTTGGGCTGGATTGGGTGTGCCCACTGTTGACCCTCCTGAGAGCCCCAGAACATACCCCCCCTGAAACTGCTTTAATGCTGCTCTCTCAGCTTTCTGCCCACCCACCAAAGAGAgaGTCTCTGGTGAATCAGGGTGTGATTCCTGTTTTGGGAGACCTGCTTCTCACACATCTGCCTAACCCAACTATAGTCACTCACTGCACTGTTACCTTCAACCACCTCTGGGACATTGTGGAGAGTCTGCAGgtCCCGCTGCCGATCGAATGCTTGTCTGGGCTTCTTCTGGCTCTTGAGTTTCATTGGAAGGAGGATGACGTTGTTTTAAGTGTATTAATTTGCCTCTATTCACTGGCTTGTCATGACTCTCTCCGATTCGGTCTTGTCGAGAAAATGACTACAACTCACATTGGCAGACTTGTGGTCATCTCCAGTGAAAGCAAAAATGTTGAATTGTCTTTTGCTGCCGGTTCTTTAATCAGCAAATTAGACATAAATGATGAACTACTGAAACTTCACCACAAAGCCATTGTGGAATACTTGATGAGATTCCTTCGCAGTCAGGAAGTGAGATTTCAGCAGCTTGCTATCTCTAGTGTGTCTAATCTCAAAAAAGGCAAGTTAGCATTTTTCCAAAAGcccatgcattttttattacaagGTTTGATTTTAAGAAGTATAAAACCCTTCCCTATTCTCAGTCAAATGAGCAGGGTGTGGAAAAACGCCACCAGGTCCAGGTGCAGCTCTTTGAATGTCAGTTGGCAGTTGAGTGATAAGATTGTGTCTGTGCAGGTGGAGGGCTGGGCAGAATGGTGACGAGGGTGGATCTGGAGCAGGAGCTGAACAGAGTGCAGCAGCAGACTGAACACACCAGACAGCTGCTCCTGATGCTCCGGCAGGACACTTTAACTATGGGCAAACCCTGAAGCAGCAGTGTTGATTGAATTTATGTGTTTACCATGACTAATGCAGAGTTTTATAGCAacttgtattattaatttttgcatagcagtgtttttatgtttgtgtttttata

Function

GO: NA

KEGG:

id description
K08332 VAC8; vacuolar protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233019.2 False 1815 mRNA 0.46 13 61950471 61983458
XM_022664187.1 True 1995 mRNA 0.45 12 61950471 61983459

Neighbor

gene id symbol gene type direction distance location
l3hypdh l3hypdh,LOC107684001 coding upstream 245643 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding upstream 253600 61696800 ~ 61696871 (+)
trnad-guc NA coding upstream 257187 61693213 ~ 61693284 (+)
LOC103031412 NA coding upstream 786873 60994927 ~ 61163598 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding upstream 1156641 60703082 ~ 60793830 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding downstream 1180 61984639 ~ 61990664 (+)
LOC103033766 LOC103033766,LOC108416260 coding downstream 808289 62791748 ~ 62793588 (+)
LOC103034413 NA coding downstream 885652 62869111 ~ 62885298 (+)
LOC103046101 LOC108414576,LOC108416204 coding downstream 905409 62888868 ~ 62907516 (+)
LOC103046397 NA coding downstream 925632 62909091 ~ 62925805 (+)
G29977 NA non-coding upstream 12495 61937664 ~ 61937976 (+)
G29963 NA non-coding upstream 32847 61908703 ~ 61917624 (+)
G29976 NA non-coding upstream 35319 61913064 ~ 61915152 (+)
G29974 NA non-coding upstream 43405 61906583 ~ 61907066 (+)
G29972 NA non-coding upstream 47502 61902763 ~ 61902969 (+)
G30042 NA non-coding downstream 64153 62047612 ~ 62092000 (+)
G30097 NA non-coding downstream 317375 62300834 ~ 62303159 (+)
G30105 LOC108416271 non-coding downstream 341058 62324517 ~ 62356704 (+)
G30110 NA non-coding downstream 411461 62394920 ~ 62395161 (+)
G30122 NA non-coding downstream 578419 62561878 ~ 62562080 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 14388 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 1425420 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 2352139 59586709 ~ 59598332 (+)
atraid atraid other upstream 2390709 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 2721631 59221266 ~ 59228840 (+)
LOC103045797 NA other downstream 838284 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 942559 62926018 ~ 62931133 (+)
G30362 NA other downstream 1352275 63335734 ~ 63345693 (+)
kit kit other downstream 2247785 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 3038960 65022419 ~ 65046978 (+)

Expression


Co-expression Network