ctgf (ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147)


Basic Information

Item Value
gene id ctgf
gene name ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50512953 ~ 50515944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233467.3
ATGCTTTCTGGAATGAGCCTGAGACTACTTGCTGTGCTCTGCTTCAGCTTTTTCAGCTGGGTGGTAGCCCAGGAGTGCAGTGGCCAGTGCCAGTGCCCTAATACGCCCCCACAGTGTGCCCCAGGTGTAAGCCTGGTGCTGGATGCCTGCGGATGCTGCCGGGTGTGTGCCAAGCAGCTGGGAGAGCTGTGCACAGAGAGAGACGTTTGCGACCCTCACAAAGGCCTGTTCTGTGACTACGGTTCCCCAAGCAATCGACGCATCGGTGTCTGCACTGCTAGAGATGGTGCCACCTGTGTGTTCGGAGGGATGGTGTACCGCAGTGGTGAGTCCTTCCAGAGCAGCTGCAAGTATCAGTGCACTTGCCTGGATGGAGCAGTTGGCTGTGTCCCCCTCTGTGGAATGGATGTCAGGCTGCCCAGCCCAGACTGCCCTTCGCCACGCAGGGTCAAGGTGCCAGGAAAGTGCTGTGAGGAGTGGGTCTGTGACTCTCCACAGTCCAACACCTTCGTGGGCTCTGCTCTTGCAGCttacagagaggaagagacctATGGCCCAGATCTTTCCATGATGCGTGAGAACTGTCTGGTCCAGACCACAGAGTGGAGCGCCTGCTCTAAGACCTGTGGCCTGGGGATCTCCACTCGTGTCACCAACGACAACCGCGAGTGCCGCCTTGAGAAGCAGTCCCGCCTGTGCATGGTCCGCCCCTGCGAATCCCACCTGGAAGAGAGAATCAGGAAAGGAAAGAAGTGCATTCGTACCCCAAGAGTCTCCAAGCCCATGAAGTTCGAGATCTCGGGCTGCACCACCACCAAGGCCTACCGGCCCAAGTTCTGCGGCGTTTGCACAGATGGCCGCTGCTGCACCCCCCACCGGACCGCCACTCTGCCCATGGAGTTCAAGTGCCCTGATGGCCAGGTCATGAAGAAGCAGATGATGTTCATCAAGACCTGCGCATGCCACTACAACTGCCCCGGTGAGAACGACATCTTCGAGTCCATGTACTACAAGAAGATGCTCGGCGACATGGCGTGAGGTGGAGGAGGGACGGAAAGACAGAAGGAGAATCCGTCCAGTGACTgtccattttaaaatgaaaacagataTCCATCTCATATCTCCGCACAGTACTCTGTctgttactttttgttttttgttcttttcattttacacatgtccttttctgtgtttgttgtatgtgtttatgtgtttgtgtgttttgttttgtatcaCTCGAAACTGTAATGATGTACCCATGATGGTGGTTGCTTAGGGCTCTTTTTTGCCCTAAAGTGAGTAAGCGATTGTGGGTGGGTTGAAGGGTGGGGAGGGTTAGGGTTTAATGACAGGGCTTCGTTGGGATGCCCCTTAAAAAATAACTGCACTATAGCCTGACTTGGTGGCACCCCTTGTCACTGATTGGCCCGACAACGCTGAGGCCCCTTTCCCTAAACTGTGGTGGGCAAATCCTGACTTGGAGAGTGAGAATGGTGAAAGGTGAGGAGGGCGGCGGCTTTTTAACCTCAGAACGGGGGCCGAAACGCCTCACccaactgagagagagagagacatgaatGTGCTCTTGTATTCTTGTATTTAACAGTGCATCTCAATGCTGAACAGGAAGCCAGGAGGTGTTCCTGTAGCACTGAGAGTGCCATAGTTCAACTGACTGACTCCTCTAAGAGAAAGAGTTGTTTTtgttgtccaaaaaaaaaaaaagactggatGATTTGCAGCTTCAttccttttttgttgttttattttttgggttGCTTTTGTAACACTGTAGATAATGTACATATTTTGTAcagtttaagttaatttaaatttaaaaacgtGTCTGTTTTTTTCACTATGTGTTATGATGATAGCTTGTTTTGCTGACTTGACTGTGCTTGTTGCAGTTTGTGTACTATTTTATTGAGAAGTGTGACCAAAAAGTTACATGTTTTGAACTTTTGTAGtttggaataaaatattatattttttatataaa

Function

symbol description
ctgf connective tissue growth factor (insulin-like growth factor-binding protein 8)

NR:

description
connective tissue growth factor

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K06827 CTGF, CCN2, IGFBP8; connective tissue growth factor (insulin-like growth factor-binding protein 8)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233467.3 True 2002 mRNA 0.49 5 50512953 50515944

Neighbor

gene id symbol gene type direction distance location
LOC111191919 NA coding upstream 1179031 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 1612719 48897216 ~ 48900234 (+)
casp8ap2 NA coding upstream 1616974 48884002 ~ 48895979 (+)
ginm1 ginm1 coding upstream 1790043 48711573 ~ 48722910 (+)
LOC103042815 NA coding upstream 1805004 48699613 ~ 48707949 (+)
lrp11 lrp11 coding downstream 190305 50706249 ~ 50723932 (+)
lats1 lats1,LOC107660506 coding downstream 242081 50758025 ~ 50768239 (+)
ube2j1 ube2j1 coding downstream 380417 50896361 ~ 50972664 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 464571 50980515 ~ 51030792 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding downstream 568124 51084068 ~ 51145395 (+)
G27322 NA non-coding upstream 94173 50362734 ~ 50418780 (+)
G27318 NA non-coding upstream 102669 50409036 ~ 50410284 (+)
G27313 NA non-coding upstream 201187 50311533 ~ 50311766 (+)
G27312 NA non-coding upstream 224980 50287770 ~ 50287973 (+)
G27309 NA non-coding upstream 236446 50276299 ~ 50276507 (+)
G27333 NA non-coding downstream 30664 50546608 ~ 50549982 (+)
G27369 NA non-coding downstream 158613 50674557 ~ 50675496 (+)
G27370 NA non-coding downstream 186427 50702371 ~ 50703121 (+)
G27463 NA non-coding downstream 456993 50972937 ~ 50973244 (+)
G27481 NA non-coding downstream 646681 51162625 ~ 51167564 (+)
moxd1 moxd1,LOC107737327 other upstream 104383 50339564 ~ 50408570 (+)
G27238 LOC107747660 other upstream 1064732 49447845 ~ 49448221 (+)
G27075 NA other upstream 1770514 48741214 ~ 48742439 (+)
G26995 NA other upstream 1871048 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 1894878 48578803 ~ 48618075 (+)
nup43 nup43 other downstream 228939 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 253919 50769863 ~ 50772162 (+)
G27489 NA other downstream 658544 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 1567338 52083282 ~ 52090633 (+)
G27683 LOC108412685 other downstream 1798081 52314025 ~ 52314266 (+)

Expression


Co-expression Network