LOC103038827 (LOC108410973)


Basic Information

Item Value
gene id LOC103038827
gene name LOC108410973
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41620999 ~ 41632164 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235239.2
TGAGGCAGTGGgcggcctctctctctctttacttatAGTAAACCCGGCCCCGCTGTGGCGCGAAGTGCAGATCGAGAAcggaagtgtgagtgtgtgttcaggtttagtttagttgttgGTTGGGAATACCGATGGCCTGCGCTGTGTACGGCTGCTCAGATCGATCTAACGGAGGGATAACGAGGAGCTTTTATAGAGTACCTAAAGTTCACCTACATAGAGGAGAAGAAATTAAGAAACTGACCCAGAAACGGCGGCAGAAGTGGCTCAGTAATCTCGTTCTGCGGCCTGGGCGCCTGGAGTCGGGCTCTGCTCGCGTGTGCAGTGAGCACTTTGTGAAAGGCTGCCCTAGTTCTTTAAGTGATGTTAAGTCTGTAGACTGGGCTCCAACACTAAACCTCGGTTATGATGAAGGTGAGCCCGTCTCCAAGGCATCGTGTCTACGAAAGGAGAGGGTGAAGTCCAGAGACAGTCATGAAAGGTGCACTGAAGTTTCAGAGGTCCAGCTGGATTGTCACAGTGAAAACCAAACCACGATCACTGTGGTGTACCTTGATAACGAGGTGGTGGACCCAGCTGCTAATGATGTTACTGAATTTCCAGCAGATGATGACAATGATGACAGTGACTAttatgatgaagatgatgatgaagaataCGATaatgaggaggaggaagaggaagaggaggatgactGTGATTACACTGAGGATGGCCCATTCTGCATAGATGATGAAGCTGAGCGGGAATGGCTCGCCAGGCTtcAAAACAATCTCAGCCAGtccacagaaaagaaaaatgtttctgCGCCACcagGTTTCAAGTCTTACCGTGCAGATTTAACATTGGGAAGGCTGACCAAGCGCTTCATGGACCTGCTTCACTCTGCACCAGAAGGTGTTCTAGACTTAAATGAGGCAGCACAAAAATTAGGCACGAGGAAAAGGCGGGTCTATGACATCACCAACGTGCTAGATGGGATTAAACTCATCACGAAGAAGTCAAAAAATAAGATCCAGTGGGTGGGCCCAACGCCAattagctgttttaaaggcCAGTGGAAGACCAAGGTGAAGGTTGACCTACTAAACTTGAAGACCATGGAGGAGGCTCTGGACTGGCTCATTAAAGACTGTGCTCAGCAGCTTTTTACTCTAACGGACATCAAAAGCAATTCTAATTCAGCTTATGTAACATATGAAGACATCTGTCAGATCAGTGTCTTTCAGGATCAGACTGTGATCGCCATCAAGGCCCCTGAGGAGACCAAGCTGGAGGTCCCAACCCCCACTGAGgaCTCTATACAGATCCACCTAAAGGGATGCAGAGGACCCATCCATGTGCTGACGTGCGACATGGGTGGACAGGGCAGCAAAGCAGGTCCAGTaaccactgctccacagcagcTTACAAAAGACCACTTCTTAACACTGGATGAGAGCAGAATACAGACAACACCACTCTCCACAGGCTAAAAACATGATTCAACAGCAGTATCGTCAAATCCATCGTTTTGTTGAACAGTTAAACACTCTGGAGGAATTGCACATCACTGATGCAGCAAAATGTTGTTCATTCGTTACCATAAACATTGCTTGAAGAACTTCGGTTGTGAAAAGGAAAAGTAATGGTGGGAGCACCATGatgaactttatttttatatgcatTACCTGATCATTCCAGTTTTTTCTTAACTAGGACACCGGTTTGTTCATCGGTCTGTACTGTAAGGAATGTGTTACTACAAAAATCTCACTTTTCTGAGAAAATAATTGTacaaaataatatgaaaatgagTAAAGGTCTATGTAATAGttcataatttcattttatgcagaaaaaacatttacagtcaGTGTGCTGAGATTACAATGGcttgtttaaacatttattaaaacacatttactcaATACTGATTGAGTCAGTAATGGCATCAATAGGAAGTATTATTTGTTGGCATTAAAAACTGATActgtttgtatttgtaaatatttttcacagtacTACTTGTTTTAAAGACACGTTCTGTTATTTTTGTCACAAATTATGatttccaaaaataaaataaatccacaCTTGTTAAAAA
>XM_007235240.2
TGAGGCAGTGGgcggcctctctctctctttacttatAGTAAACCCGGCCCCGCTGTGGCGCGAAGTGCAGATCGAGAAcggaagtgtgagtgtgtgttcaggtttagtttagttgttgGTTGGGAATACCGATGGCCTGCGCTGTGTACGGCTGCTCAGATCGATCTAACGGAGGGATAACGAGGAGCTTTTATAGAGTACCTAAAGTTCACCTACATAGAGGAGAAGAAATTAAGAAACTGACCCAGAAACGGCGGCAGAAGTGGCTCAGTAATCTCGTTCTGCGGCCTGGGCGCCTGGAGTCGGGCTCTGCTCGCGTGTGCAGTGAGCACTTTGTGAAAGGCTGCCCTAGTTCTTTAAGTGATGTTAAGTCTGTAGACTGGGCTCCAACACTAAACCTCGGTTATGATGAAGGTGAGCCCGTCTCCAAGGCATCGTGTCTACGAAAGGAGAGGGTGAAGTCCAGAGACAGTCATGAAAGGTGCACTGAAGTTTCAGAGGTCCAGCTGGATTGTCACAGTGAAAACCAAACCACGATCACTGTGGTGTACCTTGATAACGAGACTGAATTTCCAGCAGATGATGACAATGATGACAGTGACTAttatgatgaagatgatgatgaagaataCGATaatgaggaggaggaagaggaagaggaggatgactGTGATTACACTGAGGATGGCCCATTCTGCATAGATGATGAAGCTGAGCGGGAATGGCTCGCCAGGCTtcAAAACAATCTCAGCCAGtccacagaaaagaaaaatgtttctgCGCCACcagGTTTCAAGTCTTACCGTGCAGATTTAACATTGGGAAGGCTGACCAAGCGCTTCATGGACCTGCTTCACTCTGCACCAGAAGGTGTTCTAGACTTAAATGAGGCAGCACAAAAATTAGGCACGAGGAAAAGGCGGGTCTATGACATCACCAACGTGCTAGATGGGATTAAACTCATCACGAAGAAGTCAAAAAATAAGATCCAGTGGGTGGGCCCAACGCCAattagctgttttaaaggcCAGTGGAAGACCAAGGTGAAGGTTGACCTACTAAACTTGAAGACCATGGAGGAGGCTCTGGACTGGCTCATTAAAGACTGTGCTCAGCAGCTTTTTACTCTAACGGACATCAAAAGCAATTCTAATTCAGCTTATGTAACATATGAAGACATCTGTCAGATCAGTGTCTTTCAGGATCAGACTGTGATCGCCATCAAGGCCCCTGAGGAGACCAAGCTGGAGGTCCCAACCCCCACTGAGgaCTCTATACAGATCCACCTAAAGGGATGCAGAGGACCCATCCATGTGCTGACGTGCGACATGGGTGGACAGGGCAGCAAAGCAGGTCCAGTaaccactgctccacagcagcTTACAAAAGACCACTTCTTAACACTGGATGAGAGCAGAATACAGACAACACCACTCTCCACAGGCTAAAAACATGATTCAACAGCAGTATCGTCAAATCCATCGTTTTGTTGAACAGTTAAACACTCTGGAGGAATTGCACATCACTGATGCAGCAAAATGTTGTTCATTCGTTACCATAAACATTGCTTGAAGAACTTCGGTTGTGAAAAGGAAAAGTAATGGTGGGAGCACCATGatgaactttatttttatatgcatTACCTGATCATTCCAGTTTTTTCTTAACTAGGACACCGGTTTGTTCATCGGTCTGTACTGTAAGGAATGTGTTACTACAAAAATCTCACTTTTCTGAGAAAATAATTGTacaaaataatatgaaaatgagTAAAGGTCTATGTAATAGttcataatttcattttatgcagaaaaaacatttacagtcaGTGTGCTGAGATTACAATGGcttgtttaaacatttattaaaacacatttactcaATACTGATTGAGTCAGTAATGGCATCAATAGGAAGTATTATTTGTTGGCATTAAAAACTGATActgtttgtatttgtaaatatttttcacagtacTACTTGTTTTAAAGACACGTTCTGTTATTTTTGTCACAAATTATGatttccaaaaataaaataaatccacaCTTGTTAAAAA
>XM_007235241.3
GAGCGCGCTTGGCGCCTCTGCCGGTAGTGTGCGTTGGCTCGGCGGCGCGTGTAAACAAACGCAGCTGTGGTAGCGCGCGGCCTGGTCCAGCATGGTGAAGTGCGTGGTGCAGGGCTGTCAGAATCAGAGCGACCTGAAGCCCGGGGAGATGCCCACCCGGCCCCGCAAGCGCTTCTTCAGCTTCCCCGCCGACCGGAGCCGGGTGAAGGTGTGGCTGGCGGCGCTGCGGGAGGGCGAGCGCCTCGCCACTGACCGCTGTCAGATCTGTGAGGACCACTTTCTGCCCGAGCACATCACCGCCTGCGGAATACACCCCGACGCCATCCCCATCACCCCCCCGCTTGAGGGCGCACTCGCCTCCGCCGAGGAGCACGGGGAGCTGACCAAGCTGGTGACTGAATTTCCAGCAGATGATGACAATGATGACAGTGACTAttatgatgaagatgatgatgaagaataCGATaatgaggaggaggaagaggaagaggaggatgactGTGATTACACTGAGGATGGCCCATTCTGCATAGATGATGAAGCTGAGCGGGAATGGCTCGCCAGGCTtcAAAACAATCTCAGCCAGtccacagaaaagaaaaatgtttctgCGCCACcagGTTTCAAGTCTTACCGTGCAGATTTAACATTGGGAAGGCTGACCAAGCGCTTCATGGACCTGCTTCACTCTGCACCAGAAGGTGTTCTAGACTTAAATGAGGCAGCACAAAAATTAGGCACGAGGAAAAGGCGGGTCTATGACATCACCAACGTGCTAGATGGGATTAAACTCATCACGAAGAAGTCAAAAAATAAGATCCAGTGGGTGGGCCCAACGCCAattagctgttttaaaggcCAGTGGAAGACCAAGGTGAAGGTTGACCTACTAAACTTGAAGACCATGGAGGAGGCTCTGGACTGGCTCATTAAAGACTGTGCTCAGCAGCTTTTTACTCTAACGGACATCAAAAGCAATTCTAATTCAGCTTATGTAACATATGAAGACATCTGTCAGATCAGTGTCTTTCAGGATCAGACTGTGATCGCCATCAAGGCCCCTGAGGAGACCAAGCTGGAGGTCCCAACCCCCACTGAGgaCTCTATACAGATCCACCTAAAGGGATGCAGAGGACCCATCCATGTGCTGACGTGCGACATGGGTGGACAGGGCAGCAAAGCAGGTCCAGTaaccactgctccacagcagcTTACAAAAGACCACTTCTTAACACTGGATGAGAGCAGAATACAGACAACACCACTCTCCACAGGCTAAAAACATGATTCAACAGCAGTATCGTCAAATCCATCGTTTTGTTGAACAGTTAAACACTCTGGAGGAATTGCACATCACTGATGCAGCAAAATGTTGTTCATTCGTTACCATAAACATTGCTTGAAGAACTTCGGTTGTGAAAAGGAAAAGTAATGGTGGGAGCACCATGatgaactttatttttatatgcatTACCTGATCATTCCAGTTTTTTCTTAACTAGGACACCGGTTTGTTCATCGGTCTGTACTGTAAGGAATGTGTTACTACAAAAATCTCACTTTTCTGAGAAAATAATTGTacaaaataatatgaaaatgagTAAAGGTCTATGTAATAGttcataatttcattttatgcagaaaaaacatttacagtcaGTGTGCTGAGATTACAATGGcttgtttaaacatttattaaaacacatttactcaATACTGATTGAGTCAGTAATGGCATCAATAGGAAGTATTATTTGTTGGCATTAAAAACTGATActgtttgtatttgtaaatatttttcacagtacTACTTGTTTTAAAGACACGTTCTGTTATTTTTGTCACAAATTATGatttccaaaaataaaataaatccacaCTTGTTAAAAA

Function

NR:

description
PREDICTED: transcription factor E2F6-like

GO: NA

KEGG:

id description
K09390 E2F6; transcription factor E2F6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235239.2 True 2086 mRNA 0.43 9 41620999 41630257
XM_007235240.2 False 2059 mRNA 0.43 9 41620999 41630257
XM_007235241.3 False 1890 mRNA 0.46 8 41620999 41632164

Neighbor

gene id symbol gene type direction distance location
cpsf3 cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862 coding downstream 43739 41567196 ~ 41577260 (-)
taf1b NA coding downstream 122889 41489377 ~ 41498110 (-)
klf11 klf11,LOC108410427 coding downstream 147248 41469369 ~ 41473751 (-)
rrm2 rrm2,LOC107668265 coding downstream 155298 41459608 ~ 41465701 (-)
LOC103042935 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 169627 41447400 ~ 41451372 (-)
LOC103041202 NA coding upstream 102417 41734581 ~ 41738023 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding upstream 253411 41885575 ~ 41911776 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding upstream 426666 42058830 ~ 42061451 (-)
allc allc coding upstream 667705 42299869 ~ 42307990 (-)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding upstream 678186 42310350 ~ 42316742 (-)
G25367 ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 non-coding downstream 75498 41533919 ~ 41545501 (-)
G25400 NA non-coding downstream 81381 41538183 ~ 41539618 (-)
G25381 NA non-coding downstream 214212 41404010 ~ 41406787 (-)
LOC111196423 NA non-coding downstream 218305 41402021 ~ 41402694 (-)
G25272 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 non-coding downstream 371346 41244692 ~ 41249653 (-)
G25473 NA non-coding upstream 85057 41717221 ~ 41717780 (-)
G25472 kidins220b,LOC103040274,LOC108258057 non-coding upstream 87488 41719652 ~ 41729250 (-)
G25474 NA non-coding upstream 97667 41729831 ~ 41730469 (-)
G25491 NA non-coding upstream 147131 41779295 ~ 41779582 (-)
LOC111191902 NA non-coding upstream 291980 41924144 ~ 41927385 (-)
arhgap11a NA other downstream 178505 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 402170 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 1390131 40175262 ~ 40230868 (-)
G24903 NA other downstream 2162810 39455236 ~ 39458189 (-)
batf batf,LOC107697118 other downstream 2296297 39309726 ~ 39324702 (-)
LOC111196508 NA other upstream 223931 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 236860 41869024 ~ 41880424 (-)
G25678 NA other upstream 1085502 42717666 ~ 42718389 (-)
G25785 NA other upstream 1466658 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 1863255 43495419 ~ 43517157 (-)

Expression


Co-expression Network