LOC103041202


Basic Information

Item Value
gene id LOC103041202
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41734581 ~ 41738023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235249.3
aaatctttatcacCAATCATAGACTTATACAGGCACTCTTCAGCTATGAAGAGTTGGTTTTCAACGTTTGTGCTTGCTcagtattaaaattatatacataaatacatataaaattctattaaaattgtgtttatatgCGTGTGTTAGGTCTGTGCATTTATtcaggatttatatttattattttattaattgatgTCATCGCTATCTGAGTCCTCTGGATCAGTGTGTACCGGTAACTGGTTTCAGCATCTGCACGGTGCTCTTGGACCTGGTCCAGCTCCACCACGAGGGAAGAGTGCTGGGCGTGTAGGCGGGACTTCCCTGGCCAATCGCGTTGCTTGGAGTCGCAGATTGACGTGACGGCACTGACCAATCCGCTCGCTGCTGTGTGCAGTACAATAAAGCTGGCGGCGCGGTCTCTGTGTaccaaagacagacagacagtggtcgctggagcgagagagggagagagaaactgTTCTTCTGACTGATCCGCTTCTCCGCTCTGTAGCGAGTTCAGGCTCCGCTCTGCCCGAACATGAAGGCCATCAGCCCGGTGCTGCCGCTGAGGAGGAGCCCGTCCCTCAGCCTGGAGCGCGAGCTGGGCGTGTGGAGGAGTAAAGGCGGCGGCGGCGCGGAGGAGCCGCTCGGTCTGCTGTGTAACATGAACGACTGCTACAGCCGCCTGAAGGAGCTGGTGCCCAGCCTGCCGCAGAACCGGAGCGTCAGCAAGATGGAGATCCTGCAGCATGTCATCGACTACATCCTGGACCTGCAGATCGCCCTTGACTCCAGCTCCGCCtccccgcagcagcagcagagcgcGGCTCCAGAGACAGCGGTGATCTCTCTACGGACTGTCAACCACACCAGCTACTctcagTCCAGTAGCTGTCTGACAGAAATGACCTCAGATGACCATGTGACAATTCCTCGCTGAAGCTAAACTGgTGTTTCGGTCACGGAGCAAAAACAggaccttttttgttattcctcTGTGTCCGTTGCCTGGACTTCGTCTTAAATGACATGGATTTCCCTCAAACGGAGATGAAAAAAGTTctgtgtgatttttatatttatctacaGGCTGTACAGTTCCTTCTTCCAAAGGAAGATTTCTTAACAGGACAGACTGAGACGAGGCAAagcaaaatgaagaaaaagaatacattttaatgcctttttttcctttttggttAAACTTGTACAGTGTGTGATTACACTACAGCCCAGGTGTGGTGAGAGCACTTATACTGGTGCAGCCCTTCAAGCAGGGACACAGTGAGCTGCCCAGAGTGATGGCCTTCAGGGAGTGCAACTTCTGGAGTCCCTCAGTCCCAGCACATTCTAGTGTTTTCAGTGCTCCAACGCACCCAGTTAACCCTGACGAAAGGTTTATCTAGGAGCTGGTGGGTTGAGTcaggtgtgttaaagcagggaaaGCTCTCAAACGCAGGATGTCTGCAGCACCAGGCCTGAGAAATCTGAACTGAATGGAGTGCACGGATGAACAGCTTTAAAGCAGTTCATCTTGCGCTGCGAGTGCTGTAAAGTGAATTTTCTTTCTGCTGGAATGTGACCTTTGTAAtgctataaaataattttataaaagtaatgtaaaattgcacttttttatatgaaataaatgataTGAAGGCTACAAAA

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235249.3 True 1668 mRNA 0.48 3 41734581 41738023

Neighbor

gene id symbol gene type direction distance location
LOC103038827 LOC108410973 coding downstream 102417 41620999 ~ 41632164 (-)
cpsf3 cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862 coding downstream 157321 41567196 ~ 41577260 (-)
taf1b NA coding downstream 236471 41489377 ~ 41498110 (-)
klf11 klf11,LOC108410427 coding downstream 260830 41469369 ~ 41473751 (-)
rrm2 rrm2,LOC107668265 coding downstream 268880 41459608 ~ 41465701 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding upstream 147552 41885575 ~ 41911776 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding upstream 320807 42058830 ~ 42061451 (-)
allc allc coding upstream 561846 42299869 ~ 42307990 (-)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding upstream 572327 42310350 ~ 42316742 (-)
LOC103036422 LOC103036422,LOC108411258 coding upstream 981526 42719549 ~ 42727065 (-)
G25474 NA non-coding downstream 4112 41729831 ~ 41730469 (-)
G25472 kidins220b,LOC103040274,LOC108258057 non-coding downstream 5331 41719652 ~ 41729250 (-)
G25473 NA non-coding downstream 16801 41717221 ~ 41717780 (-)
G25367 ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 non-coding downstream 189080 41533919 ~ 41545501 (-)
G25400 NA non-coding downstream 194963 41538183 ~ 41539618 (-)
G25491 NA non-coding upstream 41272 41779295 ~ 41779582 (-)
LOC111191902 NA non-coding upstream 186121 41924144 ~ 41927385 (-)
G25528 NA non-coding upstream 218509 41956532 ~ 41956907 (-)
LOC111196609 NA non-coding upstream 334030 42072053 ~ 42076721 (-)
G25559 NA non-coding upstream 456984 42195007 ~ 42195290 (-)
arhgap11a NA other downstream 292087 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 515752 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 1503713 40175262 ~ 40230868 (-)
G24903 NA other downstream 2276392 39455236 ~ 39458189 (-)
batf batf,LOC107697118 other downstream 2409879 39309726 ~ 39324702 (-)
LOC111196508 NA other upstream 118072 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 131001 41869024 ~ 41880424 (-)
G25678 NA other upstream 979643 42717666 ~ 42718389 (-)
G25785 NA other upstream 1360799 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 1757396 43495419 ~ 43517157 (-)

Expression


Co-expression Network