cpsf3 (cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862)


Basic Information

Item Value
gene id cpsf3
gene name cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41567196 ~ 41577260 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235251.3
GAGGTTGTTGGTGGTTGACCGGGGTTCACGCGTAGAGCTGAGCGCGCGCCCGCTGTTGTTTAGTTAGTTTAAGGCTGAGCGGTCGGTTTTTCAGCGGTAATGCGGTTCAAACTCTGAACTGTGAGATATAGGTTACTCCATACACCTGTGTAACTATGGCTACAAAGCGGAAATCAGACCTGCCCGTTCCCGCTGAGGAAAGTGATCAGCTCCTCATCAGACCACTGGGTGCTGGCCAGGAAGTGGGCAGGTCATGCATTATCTTGGAATTCAAGGGACGCAAAATTATGCTGGACTGTGGCATTCATCCTGGACTTGAGGGAATGGATGCGCTGCCTTACATTGATCTGATCGACCCTGCTGAAATTGATCTTCTTCTGATCAGCcaTTTTCATCTGGATCACTGTGGAGCACTGCCATGGTTTCTGCAGAAAACCAGCTTTAAAGGAAGGACCTTTATGACCCATGCAACCAAAGCCATCTACCGCTGGCTACTTTCAGATTACGTCAAAGTCAGTAATATCTCAGCAGATGACATGCTGTATACGGAGACAGACCTGGAGGAGAGCATGGACAAGATTGAGACGATCAACTTCCACGAGGTGAAAGAAGTGGCTGGCATTAAGTTCTGGTGCTACCATGCTGGGCATGTTTTAGGAGCAGCCATGTTCATGATCGAGATCGCTGGTGTGAAGCTTCTCTATACTGGAGATTTCTCTCGTCAAGAAGACAGACATCTGATGGCAGCCGAGATTCCCAGTGTTAAGCCAGACATCCTTATCACAGAGTCCACCTATGGCACACACATCCATGAAAAGAGGGAGGAAAGAGAAGCCCGCTTTTGTAACACCGTTCATGACATTGTGAATCGGGAAGGACGCTGTCTTATCCCTGTATTCGCTCTGGGCAGAGCACAGGAGCTTCTGCTTATCCTGGATGAATACTGGCAGAATCATCCTGAGCTTCATGATATTCCCATCTACTATGCTTCATCCCTGGCCAAAAAGTGTATGGCTGTTTACCAGACCTATGTTAATGCCATGAATGACAAGATCCGCAAAGCCATCAACATTAACAACCCCTTTGTCTTCAAACACATCAGCAACCTCAAGAGCATGGACCATTTTGATGACATCGGCCCCAGTGTGGTGATGGCATCTCCTGGTATGATGCAGAGTGGTCTCTCCCGAGAGCTTTTTGAAAGCTGGTGCACTGATAAGAGAAATGGCGTCATCATTGCTGGCTACTGCGTGGAGGGAACGCTTGCTAAGCACATCATGTCTGAGCCAGAGGAGATCACCACCATGTCAGGCCAAAAGCTACAGCTGAAGATGTCTGTGGACTACATCTCCTTCTCAGCTCACACTGATTACCAGCAGACCAGCGAGTTCATCCGAGCACTCAAACCACCACACGTGATCCTGGTGCATGGAGAGCAGAATGAGATGGCTCGACTGAAAGCAGCACTTATTAGGGAGTATGAAGACAATGACGAGGTTCACATTGAGGTGCACAATCCCCGCAACACTGAGGCAGTCACCCTCAACTTCAGGGGAGAGAAGCTGGCCAAGGTGATGGGCTCTCTTGCAGATAAAAAGTGTGCTCAAGGCCAGAGGGTTTCTGGAATTCTGGTGAAACGCAACTTCAGTTACCACATCCTCACTCCGTCTGACCTCTCCAATTACACTGATCTGGCTATGAGCACCGTGAAGCAGTCGCAGGCCATTCCTTTTTCTGGACCCTTCAACCTTCTGCACAACCAATTATGCTACCTGGCAGgAAATGTAGAGGAGGTGGACACAGCAGAGAAAACCACCCTGAGGATCTTTGACAGCATCACCTTAGTTCATGATGGCAACATGGTCTTACTGGAGTGGGTTTCCAATCCTTTGAATGATATGTACGCTGATGCAGTCACCACAGTGGTGCTAGAGGTGCAGTCAAACCCAAAAGCTCAGAAAGCTATAAAACACAGTGAGAAGAAGGTGGATCCAGATGTGTTCCACAACAGACTACAAATCATGTTCCAAGACATGTTTGGTGAGGAGTGTGTAGACTTCAAGGACAAAaatactgttactgtaacagtagatgGCAAGACTGCCAACATCAACCTGGAGACTAGGACTGTGGAGTATGAAGAGGGCAGTGCAGATGACGAGTCTTTGAAAGAGATGGTGGAGCTGTCTGTGCAGAGGCTGTATGATGCCATAAATCCTGTGATgtgaataaaaatgcatttctaTCCTGAGGATGCTCTTCTACCAAATGATATCAGCACATCCACCCCTGTCCAGCCACTACTGATGGAAGAAGCAGAAACATTTTCTCTGCAAAATCCCCAACCAACTCTGTAAACACTGAGTTTCTGTTAATGGTTGAATTAACTCACGCTAATTCAGTTTCAATACTTGTGAAAGTGTcaacatttgcttttttttttttgtacactttTGTGTATGGTTCAAGTAGAAAGATTTAATTTCTATGGCTCGATATATTGTCCGGATTAAACAGATAATCTCTACAAAA

Function

symbol description
cpsf3 Predicted to enable 5'-3' exonuclease activity; RNA binding activity; and endoribonuclease activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage and mRNA polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF3 (cleavage and polyadenylation specific factor 3).

NR:

description
cleavage and polyadenylation specificity factor subunit 3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14403 CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235251.3 True 2532 mRNA 0.47 18 41567196 41577260

Neighbor

gene id symbol gene type direction distance location
taf1b NA coding downstream 69086 41489377 ~ 41498110 (-)
klf11 klf11,LOC108410427 coding downstream 93445 41469369 ~ 41473751 (-)
rrm2 rrm2,LOC107668265 coding downstream 101495 41459608 ~ 41465701 (-)
LOC103042935 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 115824 41447400 ~ 41451372 (-)
LOC111196450 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 120731 41444016 ~ 41446465 (-)
LOC103038827 LOC108410973 coding upstream 43739 41620999 ~ 41632164 (-)
LOC103041202 NA coding upstream 157321 41734581 ~ 41738023 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding upstream 308315 41885575 ~ 41911776 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding upstream 481570 42058830 ~ 42061451 (-)
allc allc coding upstream 722609 42299869 ~ 42307990 (-)
G25367 ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 non-coding downstream 21695 41533919 ~ 41545501 (-)
G25400 NA non-coding downstream 27578 41538183 ~ 41539618 (-)
G25381 NA non-coding downstream 160409 41404010 ~ 41406787 (-)
LOC111196423 NA non-coding downstream 164502 41402021 ~ 41402694 (-)
G25272 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 non-coding downstream 317543 41244692 ~ 41249653 (-)
G25473 NA non-coding upstream 139961 41717221 ~ 41717780 (-)
G25472 kidins220b,LOC103040274,LOC108258057 non-coding upstream 142392 41719652 ~ 41729250 (-)
G25474 NA non-coding upstream 152571 41729831 ~ 41730469 (-)
G25491 NA non-coding upstream 202035 41779295 ~ 41779582 (-)
LOC111191902 NA non-coding upstream 346884 41924144 ~ 41927385 (-)
arhgap11a NA other downstream 124702 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 348367 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 1336328 40175262 ~ 40230868 (-)
G24903 NA other downstream 2109007 39455236 ~ 39458189 (-)
batf batf,LOC107697118 other downstream 2242494 39309726 ~ 39324702 (-)
LOC111196508 NA other upstream 278835 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 291764 41869024 ~ 41880424 (-)
G25678 NA other upstream 1140406 42717666 ~ 42718389 (-)
G25785 NA other upstream 1521562 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 1918159 43495419 ~ 43517157 (-)

Expression


Co-expression Network