LOC103041996 (LOC108410928)


Basic Information

Item Value
gene id LOC103041996
gene name LOC108410928
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41547974 ~ 41567160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235252.2
ACCGAGCAGAAGAATATCAGATCAGTggagaaataaaaatagctCAGATATGAGTGATCTCCCCGGCTGAATTTATCCTGTTATGTAAGACACTGTACAGAGATCAGAGTGGTGAGGAATGGCGGTGTGAAGGTCGGCGGGGTGTGTGGTGTGATGACTGCAGCAGCAGTGATTTTACAGTAGTTTTATACTGAGTGAGAGagtagagtgagtgagtgtctgTAGCCTGGAGCCGAGTCTAAAACACTGAATAGTTATGGCTGATAGGAGCACGGAGGTGCTTTAAAACTCCGGCTAAACTAAACTACAGTATTCCCGGATGTACGGCTAGTCTACGGAGCTGAACTGTTTTTTGACTttaccgttccaccttaaatagtacaGCAGCGCATTGGCACTACCTGGAGCCGCCAGAGAGAAACTGCAgtggtatttaaggtggaacggggaATTCCGGCAGCTAAGTGTTCACTCCAGCCTCGTGGCTAGTGTTTGGGTATTTTCCGTTCATACACTTTCTGTTAGACTGCGGGGTCCTCTCTGTTCTTTACTCTCTCGTTTCACTGTGAACATGGAGGTTTTACTGTCTCCTACGGTCTCAGCCGCCATGTCCAGATGTTGTTGGCGGCGgccgcgctgctgctgctgctgctaatccGGCGGATAGTATCTCTGCAGCTCCACTGAAGCGCAGAGATTAACTCTAGAGACGCTCAGATTCAGATTCGGCCCCGCCGCCATGCAGCTGCTCCGCCGCCGCCGCGCcgtcctcctcctgctcctctctCTGCTCCTGGCGGACTGCTCGGAGGAACCTCCGCGGGACGGACAGTACGATCACCTCAGCGCCATCCTGACAAATTTTGATGTGCTGAACCTGTCCAGCCTACAGCAGCACTCTGTCCGTAAGCGAGAtgtggaaacacacacacatgcggaGAGACTGCTCAGCTTCACTGCCTTACAGAAGCACTTCAGACTTTATCTTGCGACCAACACTGAACTTTTCACAGATGACTTCAATACTCTGGTCATTGGGGAGGATGGCACACATGAAGTTTATGAGGTCCAGAGAGAGAACTTCTTCACGGGCCACGTCATTGGTGAGGAAAACTCGCGTGTGCAGGCTCACATCAATAACAATGACTTCACTGCCCACATCCTGACTGATGAAGCCGAGTACAATATAGAGccTATGTGGAGGTTTATTGAGGGACCGCAAGATGACCGTTTGCTGGTGTACCGCTCAGAGGACATCCGGAATGTGAGCCGGCTAGCTGCTCCTAAAGTGTGTGGTTACATCAATGCAGAGGCAACTCAGCTCCTACCCGATGGTGTCCGTGCAGGCACAGCactggaagaagaagaggaagaagaagaagtggaaAAGCACCTGAGAGAGAAAAGGCAGGTAGTGGATCACAGTAAGAACACCTGCCCCCTGCTGCTGGTGGCAGACTATCGCTTCTTCAGAAACATGGGTCGCAGAGAGGAGAGCACCACCATCAACTACTTAATCGAACTAATTGACCGAGTGGATGACATCTATAGAAACACGTCTTGGGACGAGGAGTTCAAGGGCTACGGTGTTCAGATCCAGCAGATTATAGTAAACAAAGATCCCACTCCAGTGGAACCAGGAAAGGCTCACTTCAACATGAAGGGAAGTCCAACAAAAGATGTGTGGGATGTGAAAAAACTGCTGGAGCAATTCAGCATTGACATTGCTGCCAACGCTTCCAAAGTGTGCCTGGCTCACCTGTTCACATACCAGGACTTTGATGAGGGCACACTGGGACTTGCCTACGTCGCTCCAGCTAAAGATGGTGCCCCTGGAGGCCTCTGCTCTAAGGAGTGTCCTCAGTCATCAAGTGACCGCCAAgccatttacctgaacacaggTTTAACCAGCACCAAGAATTATGGGAAAACTATTCTGACTAAAGAAGCTGATTTGGTAACAACTCATGAACTTGGGCACAACTTTGGGGCTGTCCACGACCCAGATGATGTTCCATACTGTGCCCCCAGTGAGGACCAAGGGGGTAAATACGTCATGTACCCTATCGCTGTGAGTGGAGATCACTCCAATAATAAGCTGTTTTCCAACTGCAGTAAGATCTCCATAGTGAAAAGGCTGAGGCACAAGGGTCCGTCCTGTTTTAAGGAGCGGAACAGTAAAGTGTGTGGGAATTCACGGGTGGAAGAGGGTGAGGAGTGTGACCCTGGGCTGCTCCACCTCAGCACAGACCCGTGCTGCACCGCTGACTGCAAGCTGCGCCCAGGAAAGCTGTGCAGtgacaGGAACAGTGCGTGCTGCAAAAACTGCGTGTATGAAAAGAAGGGTAAGCAGTGCCAGGAGCAGATCAATGCCACCTGTAAGGGGGAATCGTACTGCACAGGTACAAGTAGTAAATGCCCACCTCCAGAGAACCTCCTTGACAAGACCACCTGTGTGGACAGTGGTCAATGTATGAATGGCGTGTGTATACCATTCTGCGAGGCTTTTTTGAAACTACAGTCTTGTGCCTGCAATGAGACTGATAACTCTTGTAAGGTGTGCTGCCGCAACAGAGCAGGAGCATGCTCTCCTTACCAAGACGATCGCGGTAAATTCCTCTACCTCCGGAAAGGGAAACCCTGCACCGTGGGCTTCTGTGATGGAGGCGGTAAATGCATGAAACAGGTGCAGGATGTGATTGAAAGGTTGTGGGACTTCATTGACAAGCTAAACATCAACACTTTTGGAAAGTTCCTGGCTGATAATATAGTGGGGTCAGTGGTGGCCTTTTCTCTGGTCTTCTGGATCCCTCTCAGTATTTTGGTGCACTGCATGGACAAGAAGCTTGACCAGCAGTATGAACTGAATACTAGATCACTCTTTTACCCAAGTAATGCAGAGTTGCTGAGCAGTCTGGAGTCGGCCTCGGTGCGCATCTTCAAGCCTCCCTCTGCCTCGGCTCTCTCCGCTGTTCCTCGCTTTCAGCCTACTGGTCCACTACAAACCAGCACCCCTCCCGTCCAGCTGCCTGCCCCCAACCTGACCCCTACTGCCCCAATCCTGCTGCCCAACATGGAGCCGCTCCGCATGGCCACCATCCAGGAGGACGCCAGCTACGACTCTCACCTGGACGAACAGGCACTGGCGGAGGAGTTCCCCAGCCCCAGCTCGGGTGCACGCTCTTTTGAGGACCTGACCAGCCCAGAGAAGGTTTTGTCTTATAGAATGACGAGACACAGGGGCAGCAAGGAGACTGAGTGCTGAATTTGTCAAACGCCATGTTTGGTCCGgccaaaaatggacaaaatttTCCACTTCCCCTAAATGTATTTGATCAAGCAATACATGTTTGGTGTAAAAAGTCTGCTTCTTAAATTTTGCACTGCATCAGTTAGCAATGTGTAAACTGCAGGTCTAAATAATCACTCTCGTCTCAAAACAGGTCAAGTCCTTATGACAAGTCTGTATGACAATCTGTAATCTGTAAAAAGGGACAAATGGAAAAGCTGTGTGAGAGTGAACGTATTAAAGCTGGAGGAGAAACAGAACCAGCAGTGCTTGCATAAGTAAAGCGTAGGCTGGTGGTTATGTAAGGCCATTACAGTCTATAGTATGCTCCTGGAATTCTACACGAGCGTACTGTAGAGTTTAATGCTCATATTTATGTAATGTTCAGTTTAATGCAAAATATTAATGAATAGTAGAAAATAGAAGGAGCTATATTTTGAATTTAGTGCAGGGATTCCTAACCTTTTTCACTGTGCAACTCACACTCCTTTTACAGAAACAGATGATTGCCAGTACTTCTTTCTAAAATTGCAAgataataatagttaataatagtCGAGGGGAAGAGTCATAGAGCCAGTCTGATTCAGCGAAAAGACATTCCTGGATAATATCCGGATAATGTCAGATTCTCTGCACATTTTGCAGAAGAAACACCCCCAGGGGCTGTCAGGACCGCATTGAGGTGACGTTCCCCAGGTTAGGAACCCCTAATCTAGGGATAATCACTGCGCACACTAGATCATACCAGATCCACGCACATTTGACCCAGCTTTATTGTTATTAAGGCTAATAAAAGTAATCACGTTTACAGGTCTGTTCATCCGTTGGGATCTGAACAGGCATCCAGCATAGGGAGTCTTTTACTGTGGAGAACATTTAGCTCAATTGTACTTTTAGTACTTTTGTATGCGTATTTACTAATGCAGTGTTGGGaatttgtatgtgtatgtatgttggGCCACACTCCAGACTTTGTTGGTACCTTCTAGCTTTTCTACAAAGACTAAATGTTTCGCCaaatatcagcagtgttaaggccaaaattttgttttcagttcaggttaagattagagttagtGGGAGCGGTTATTAGTTCAGCCCCTGTCGGTTCTGGACCTTTTCCTGGAgagctttaataaaaataatcttgTTCCATTAGACAGtaaataaacgttttaaacTGATAATCAACACCATTgggagtgtaaaaaaaatatatatatttttacagatttacagattATTTTGACCTTGAGCTTTTAAGGAAGAATATGGTATTAGTGGGAGATATAACAGTATTCTTAGGTTCAGTGGTGTACCTGTGCGTACAACAGGTATTTGGGATCTTTATGTTCAACAGTAATTTTAAACCCACcagcattttctctcttttcttatcATTtgtaagttttcttttttttttattattgcaagaCAATCGTATACATTTCTTCATTCAGGTTTAAGGAGTTGGGATTAATAACTACACAAAGACCTGCGTGAATGGATAACCTGGCTATTTGCCATTTGAAAATACCACTATCAGCAACTACTGTCAAGAAACAGCTTTATTCAGGAAGAGTTTTGATGCACAGTTTAAAACAATGTACTGAAACAGGACAGCGAAGTGCCTTTttgtatacatatatagtgTTTTATTCTCATGCTGCCTGTTTTGtgtgaatattttttatctttaggactttttttctttacacctggtcacttcatgtgtcTTCAGTATCATGatcatatttaaataaagcCAAACCAAGTAAAATAGCAAACAGACGTACAATTCccatcactcaaaccacttcagaaggtgGTTGGAGATGATTTTGAGCTGTGGTAGCAGTGTAAACATTTCTATTCACCAACCAAAACCCCGCCCAGTACAACTAAAACACCATAATTGCAggacaaaaagcaaaaattgtaataattgcAGTACAAAAAGCCAATTTGCATATTCCATTCCATACAGCAACTGAACTGATGGTCTGACTGATGCATGTGAATAAAACAGGACACAATCCTGGTATACatcacatgaagtgaccagaAGTAAACAGGTACTAAATGTTCTAAAAGCACCATCCAATCTCTAGCAGTAGAATCAACATGGACATATCCACATTACCCAGATCTTTGTGATGTACTTGAATGTAGTAGATATAAATGGGCATCGTTCTGTGTTCAAGTTAAACCATTTCTTAACCATTTCTGTTTCTGAAACACTTTATGTTAGGCTGTGGTTTTAGtgcatttctttgtgttttgtttgtgatCTTATTCTGATGTGATGAATAATGTTTGGGTGACTGGAGTATTAAGACTGTACGCAATAATGTACAAGTTTGAATGAATTAACATCTCTTTAACTGGGATGGTGttttatttctaataataaatcagatttactCTGAA

Function

NR:

description
PREDICTED: disintegrin and metalloproteinase domain-containing protein 17-like isoform X1

GO: NA

KEGG:

id description
K06059 ADAM17, TACE, CD156b; disintegrin and metalloproteinase domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235252.2 True 5722 mRNA 0.45 19 41547974 41567160

Neighbor

gene id symbol gene type direction distance location
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding upstream 2477 41534105 ~ 41545497 (+)
fmn1 fmn1 coding upstream 119804 41403996 ~ 41428170 (+)
aven NA coding upstream 268037 41254714 ~ 41279937 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 coding upstream 298403 41244537 ~ 41249571 (+)
katnbl1 katnbl1 coding upstream 305626 41236256 ~ 41242348 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding downstream 21592 41588752 ~ 41621272 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding downstream 67795 41634955 ~ 41705390 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding downstream 141610 41708770 ~ 41733546 (+)
rnaseh1 LOC107693208 coding downstream 750363 42317523 ~ 42326404 (+)
LOC103042546 LOC108411077 coding downstream 836760 42403920 ~ 42496318 (+)
LOC111196462 NA non-coding upstream 28679 41507988 ~ 41519295 (+)
G25355 NA non-coding upstream 50235 41495866 ~ 41497739 (+)
G25351 NA non-coding upstream 61706 41485489 ~ 41486268 (+)
G25339 NA non-coding upstream 105435 41439812 ~ 41442539 (+)
G25287 NA non-coding upstream 251286 41293464 ~ 41296688 (+)
G25407 NA non-coding downstream 9123 41576283 ~ 41577638 (+)
G25426 NA non-coding downstream 20939 41588099 ~ 41588458 (+)
G25428 NA non-coding downstream 57621 41624781 ~ 41632161 (+)
G25458 NA non-coding downstream 166843 41734003 ~ 41734204 (+)
G25459 NA non-coding downstream 167427 41734587 ~ 41735710 (+)
G24972 NA other upstream 1722256 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 2150096 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 2207003 39325083 ~ 39340971 (+)
G24719 NA other upstream 2502193 39045170 ~ 39045781 (+)
G24583 NA other upstream 2600752 38939357 ~ 38947222 (+)
G25601 NA other downstream 824480 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 930562 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 1692460 43259620 ~ 43262099 (+)
rps29 NA other downstream 1793309 43360469 ~ 43363444 (+)
G25879 NA other downstream 1854611 43421771 ~ 43422046 (+)

Expression


Co-expression Network